Wall clock time and date at job start Tue Mar 31 2020 19:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47156 * 2 1 4 4 C 1.50704 * 109.47092 * 179.97438 * 3 2 1 5 5 C 1.35363 * 126.38185 * 85.00999 * 4 3 2 6 6 C 1.41506 * 105.50123 * 179.97438 * 5 4 3 7 7 C 1.47703 * 126.51630 * 179.97438 * 6 5 4 8 8 O 1.21568 * 120.00339 * 6.71387 * 7 6 5 9 9 N 1.34781 * 119.99960 * 186.72006 * 7 6 5 10 10 C 1.46924 * 120.62862 * 7.75325 * 9 7 6 11 11 C 1.53196 * 108.77451 * 126.37312 * 10 9 7 12 12 C 1.53045 * 109.30959 * 54.63771 * 11 10 9 13 13 C 1.53049 * 109.53720 * 298.63408 * 12 11 10 14 14 C 1.46927 * 120.62986 * 187.48497 * 9 7 6 15 15 H 1.08999 * 109.58869 * 113.84294 * 14 9 7 16 16 C 1.52998 * 109.58766 * 353.40977 * 14 9 7 17 17 H 1.08996 * 109.47047 * 53.31093 * 16 14 9 18 18 C 1.53000 * 109.47138 * 173.31360 * 16 14 9 19 19 N 1.46503 * 109.47082 * 293.31198 * 16 14 9 20 20 C 1.36940 * 120.00194 * 154.99946 * 19 16 14 21 21 H 1.08005 * 119.99362 * 0.02562 * 20 19 16 22 22 C 1.38805 * 120.00007 * 179.97438 * 20 19 16 23 23 N 1.31621 * 120.00362 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99944 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47050 * 60.00045 * 24 22 20 26 26 H 1.48492 * 109.47336 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47116 * 300.00281 * 24 22 20 28 28 N 1.31811 * 106.96102 * 359.97438 * 6 5 4 29 29 N 1.28462 * 110.07582 * 359.71914 * 28 6 5 30 30 H 0.96998 * 124.89006 * 180.31347 * 29 28 6 31 31 H 1.09000 * 109.47285 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47065 * 59.99749 * 1 2 3 33 33 H 1.09002 * 109.46877 * 299.99676 * 1 2 3 34 34 H 1.09005 * 109.47164 * 120.00196 * 2 1 3 35 35 H 1.09002 * 109.46877 * 240.00324 * 2 1 3 36 36 H 1.08994 * 109.47241 * 300.00626 * 3 2 1 37 37 H 1.09002 * 109.46963 * 60.00376 * 3 2 1 38 38 H 1.07997 * 127.24757 * 0.02562 * 5 4 3 39 39 H 1.09000 * 109.58759 * 246.16261 * 10 9 7 40 40 H 1.08998 * 109.58895 * 6.44911 * 10 9 7 41 41 H 1.08995 * 109.49787 * 174.58546 * 11 10 9 42 42 H 1.09000 * 109.50058 * 294.68489 * 11 10 9 43 43 H 1.08994 * 109.46573 * 58.65524 * 12 11 10 44 44 H 1.09000 * 109.45773 * 178.61568 * 12 11 10 45 45 H 1.08997 * 109.49446 * 181.31915 * 13 12 11 46 46 H 1.09005 * 109.49393 * 301.38001 * 13 12 11 47 47 H 1.08999 * 109.47513 * 56.94591 * 18 16 14 48 48 H 1.08996 * 109.46994 * 176.95054 * 18 16 14 49 49 H 1.09007 * 109.46928 * 296.94694 * 18 16 14 50 50 H 0.97002 * 120.00100 * 334.99969 * 19 16 14 51 51 H 0.97000 * 120.00273 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3504 1.3475 -1.0847 6 6 5.6723 1.3920 -0.5817 7 6 6.9169 1.3224 -1.3740 8 8 6.8662 1.3389 -2.5885 9 7 8.1090 1.2404 -0.7504 10 6 8.1811 1.0489 0.7045 11 6 9.0646 -0.1676 0.9985 12 6 10.4241 0.0186 0.3209 13 6 10.2313 0.1208 -1.1940 14 6 9.3610 1.3350 -1.5135 15 1 9.8916 2.2451 -1.2337 16 6 9.0484 1.3597 -3.0110 17 1 8.3264 2.1495 -3.2184 18 6 10.3345 1.6252 -3.7961 19 7 8.4881 0.0676 -3.4143 20 6 7.6773 -0.0137 -4.5148 21 1 7.4513 0.8748 -5.0858 22 6 7.1468 -1.2381 -4.8972 23 7 7.4226 -2.3209 -4.2017 24 14 6.0414 -1.3490 -6.3990 25 1 6.7882 -0.8914 -7.5982 26 1 5.6084 -2.7562 -6.5921 27 1 4.8484 -0.4874 -6.2002 28 7 5.5817 1.5075 0.7282 29 7 4.3476 1.5445 1.0832 30 1 4.0358 1.6307 1.9977 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.6766 1.9563 -0.8899 37 1 1.6767 1.9563 0.8900 38 1 4.0465 1.2576 -2.1171 39 1 8.6135 1.9353 1.1688 40 1 7.1799 0.8803 1.1010 41 1 9.2048 -0.2637 2.0751 42 1 8.5855 -1.0671 0.6118 43 1 10.8918 0.9314 0.6897 44 1 11.0634 -0.8343 0.5488 45 1 11.2019 0.2300 -1.6777 46 1 9.7418 -0.7817 -1.5601 47 1 11.0756 0.8657 -3.5472 48 1 10.1219 1.5891 -4.8646 49 1 10.7222 2.6102 -3.5359 50 1 8.6913 -0.7305 -2.9017 51 1 7.0516 -3.1765 -4.4687 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731298189.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:34 Heat of formation + Delta-G solvation = 86.590899 kcal Electronic energy + Delta-G solvation = -31031.500341 eV Core-core repulsion = 27162.353227 eV Total energy + Delta-G solvation = -3869.147114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.49467 -39.77962 -36.64205 -35.53002 -35.00772 -32.43891 -32.05454 -31.32591 -30.81608 -29.45552 -27.91082 -26.58683 -25.32727 -23.74073 -23.37911 -22.46628 -22.03375 -20.85748 -20.35172 -19.69959 -18.05605 -17.61851 -16.83585 -16.03180 -15.58870 -15.30042 -15.19874 -14.54383 -14.31882 -14.04923 -13.97245 -13.75063 -13.48523 -13.42084 -13.20259 -13.10347 -12.77646 -12.52300 -12.38811 -12.05286 -11.99045 -11.75154 -11.60016 -11.47471 -11.27134 -11.07956 -10.94666 -10.86843 -10.58525 -10.51590 -10.40966 -10.38088 -9.98522 -9.82999 -9.62378 -9.24460 -9.04266 -8.74567 -8.54241 -8.25763 -7.73733 -6.45219 -5.38837 -2.59870 1.91229 2.43247 2.96352 3.61836 3.64633 3.67739 3.69982 4.17470 4.51195 4.67308 4.81110 4.85928 4.91868 5.09504 5.18424 5.26229 5.26698 5.30384 5.48912 5.50698 5.58114 5.61406 5.74312 5.78310 5.83309 5.86627 5.90674 5.93949 5.95915 5.99575 6.09510 6.15554 6.16425 6.27684 6.28345 6.33857 6.43265 6.46743 6.57298 6.61693 6.71529 6.73421 7.05072 7.11848 7.15378 7.25511 7.55367 8.04414 8.09193 8.23395 8.79727 9.14072 9.91226 10.49105 10.85556 11.85940 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008454 B = 0.005248 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3311.116513 B = 5334.002799 C = 7729.342936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.047 4.047 4 C 0.010 3.990 5 C -0.170 4.170 6 C 0.015 3.985 7 C 0.571 3.429 8 O -0.437 6.437 9 N -0.600 5.600 10 C 0.094 3.906 11 C -0.134 4.134 12 C -0.116 4.116 13 C -0.134 4.134 14 C 0.148 3.852 15 H 0.061 0.939 16 C 0.170 3.830 17 H 0.079 0.921 18 C -0.170 4.170 19 N -0.701 5.701 20 C -0.171 4.171 21 H 0.064 0.936 22 C -0.031 4.031 23 N -0.949 5.949 24 Si 0.897 3.103 25 H -0.293 1.293 26 H -0.297 1.297 27 H -0.291 1.291 28 N -0.272 5.272 29 N -0.393 5.393 30 H 0.437 0.563 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.161 0.839 39 H 0.052 0.948 40 H 0.119 0.881 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.043 0.957 48 H 0.055 0.945 49 H 0.032 0.968 50 H 0.378 0.622 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.925 8.720 16.281 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.086 4.086 4 C -0.116 4.116 5 C -0.198 4.198 6 C -0.146 4.146 7 C 0.354 3.646 8 O -0.304 6.304 9 N -0.336 5.336 10 C -0.029 4.029 11 C -0.173 4.173 12 C -0.154 4.154 13 C -0.172 4.172 14 C 0.044 3.956 15 H 0.079 0.921 16 C 0.060 3.940 17 H 0.096 0.904 18 C -0.231 4.231 19 N -0.343 5.343 20 C -0.303 4.303 21 H 0.082 0.918 22 C -0.224 4.224 23 N -0.602 5.602 24 Si 0.730 3.270 25 H -0.220 1.220 26 H -0.224 1.224 27 H -0.219 1.219 28 N -0.108 5.108 29 N -0.105 5.105 30 H 0.280 0.720 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.178 0.822 39 H 0.071 0.929 40 H 0.136 0.864 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.088 0.912 46 H 0.099 0.901 47 H 0.062 0.938 48 H 0.074 0.926 49 H 0.051 0.949 50 H 0.214 0.786 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.424 8.856 16.309 19.334 hybrid contribution -1.131 -0.614 -0.661 1.447 sum -6.555 8.242 15.648 18.861 Atomic orbital electron populations 1.21773 0.95430 1.01944 1.01774 1.21556 0.95773 0.95655 1.03117 1.20170 0.86682 0.98135 1.03603 1.21330 0.94719 1.08022 0.87534 1.21564 0.90718 1.07709 0.99824 1.22457 0.96054 1.06788 0.89269 1.17100 0.81090 0.79473 0.86937 1.91145 1.84490 1.43913 1.10815 1.47617 1.05024 1.73726 1.07234 1.22208 1.03178 0.96561 0.80999 1.21916 0.96387 0.99329 0.99643 1.21508 0.96707 1.01012 0.96168 1.21927 0.99981 1.00264 0.95045 1.21474 0.83636 0.96665 0.93815 0.92120 1.20669 0.92558 0.92827 0.87933 0.90396 1.22593 0.99970 0.98455 1.02068 1.42421 1.56217 1.03180 1.32440 1.19036 1.17989 0.92571 1.00670 0.91839 1.24529 1.02325 0.95961 0.99575 1.69633 1.50840 0.98131 1.41592 0.86374 0.81210 0.75853 0.83549 1.22012 1.22387 1.21883 1.73386 1.00499 1.21493 1.15402 1.43389 1.03394 1.54316 1.09443 0.71976 0.92496 0.92412 0.92895 0.92081 0.90840 0.89196 0.91030 0.82170 0.92941 0.86378 0.91840 0.91511 0.92580 0.92384 0.91173 0.90110 0.93754 0.92597 0.94939 0.78614 0.94369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 3 C -0.05 -0.41 5.77 -27.88 -0.16 -0.57 16 4 C 0.01 0.12 6.48 -82.21 -0.53 -0.41 16 5 C -0.17 -2.83 10.74 -39.36 -0.42 -3.25 16 6 C 0.02 0.28 6.82 -82.77 -0.56 -0.29 16 7 C 0.57 11.90 7.41 -12.39 -0.09 11.81 16 8 O -0.44 -10.74 9.62 5.31 0.05 -10.69 16 9 N -0.60 -10.92 2.98 -166.63 -0.50 -11.42 16 10 C 0.09 1.41 6.10 -3.71 -0.02 1.39 16 11 C -0.13 -1.88 6.08 -26.61 -0.16 -2.05 16 12 C -0.12 -1.60 5.89 -26.68 -0.16 -1.76 16 13 C -0.13 -2.26 4.86 -26.83 -0.13 -2.39 16 14 C 0.15 2.66 2.70 -67.82 -0.18 2.47 16 15 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 16 C 0.17 3.65 1.88 -67.93 -0.13 3.52 16 17 H 0.08 1.84 5.93 -52.08 -0.31 1.53 16 18 C -0.17 -3.28 9.35 37.16 0.35 -2.93 16 19 N -0.70 -18.25 3.63 -53.43 -0.19 -18.45 16 20 C -0.17 -4.99 7.95 -15.06 -0.12 -5.11 16 21 H 0.06 1.88 7.83 -52.48 -0.41 1.47 16 22 C -0.03 -0.95 5.50 -17.43 -0.10 -1.05 16 23 N -0.95 -30.23 13.06 55.49 0.72 -29.51 16 24 Si 0.90 24.11 29.55 -169.99 -5.02 19.09 16 25 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 26 H -0.30 -8.07 7.11 56.52 0.40 -7.66 16 27 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 28 N -0.27 -4.02 8.73 33.42 0.29 -3.73 16 29 N -0.39 -4.47 6.83 33.50 0.23 -4.24 16 30 H 0.44 3.16 8.96 -190.45 -1.71 1.45 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.16 2.81 8.06 -52.49 -0.42 2.38 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.12 1.79 4.21 -65.77 -0.28 1.51 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.07 1.12 6.85 -51.93 -0.36 0.76 16 46 H 0.08 1.67 5.98 -51.93 -0.31 1.36 16 47 H 0.04 0.82 6.64 -51.93 -0.34 0.48 16 48 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.38 10.52 5.57 -40.82 -0.23 10.29 16 51 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 389.53 15.07 5.87 5.87 Total: -1.00 -34.82 389.53 -10.60 -45.43 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -9.84 Total: 10.27 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -2.21 Total: -2.62 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: 0.56 Total: -67.34 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.05 Total: -10.69 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -5.02 Total: 19.09 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.82 -10.60 -45.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731298189.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.018 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds