Wall clock time and date at job start Tue Mar 31 2020 19:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47156 * 2 1 4 4 C 1.50704 * 109.47092 * 179.97438 * 3 2 1 5 5 C 1.35363 * 126.38185 * 85.00999 * 4 3 2 6 6 C 1.41506 * 105.50123 * 179.97438 * 5 4 3 7 7 C 1.47703 * 126.51630 * 179.97438 * 6 5 4 8 8 O 1.21568 * 120.00339 * 6.71387 * 7 6 5 9 9 N 1.34781 * 119.99960 * 186.72006 * 7 6 5 10 10 C 1.46924 * 120.62862 * 7.75325 * 9 7 6 11 11 C 1.53196 * 108.77451 * 126.37312 * 10 9 7 12 12 C 1.53045 * 109.30959 * 54.63771 * 11 10 9 13 13 C 1.53049 * 109.53720 * 298.63408 * 12 11 10 14 14 C 1.46927 * 120.62986 * 187.48497 * 9 7 6 15 15 H 1.08999 * 109.58869 * 113.84294 * 14 9 7 16 16 C 1.52998 * 109.58766 * 353.40977 * 14 9 7 17 17 H 1.08996 * 109.47047 * 53.31093 * 16 14 9 18 18 C 1.53000 * 109.47138 * 173.31360 * 16 14 9 19 19 N 1.46503 * 109.47082 * 293.31198 * 16 14 9 20 20 C 1.36940 * 120.00194 * 154.99946 * 19 16 14 21 21 H 1.08005 * 119.99362 * 0.02562 * 20 19 16 22 22 C 1.38805 * 120.00007 * 179.97438 * 20 19 16 23 23 N 1.31621 * 120.00362 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99944 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47050 * 60.00045 * 24 22 20 26 26 H 1.48492 * 109.47336 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47116 * 300.00281 * 24 22 20 28 28 N 1.31811 * 106.96102 * 359.97438 * 6 5 4 29 29 N 1.28462 * 110.07582 * 359.71914 * 28 6 5 30 30 H 0.96998 * 124.89006 * 180.31347 * 29 28 6 31 31 H 1.09000 * 109.47285 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47065 * 59.99749 * 1 2 3 33 33 H 1.09002 * 109.46877 * 299.99676 * 1 2 3 34 34 H 1.09005 * 109.47164 * 120.00196 * 2 1 3 35 35 H 1.09002 * 109.46877 * 240.00324 * 2 1 3 36 36 H 1.08994 * 109.47241 * 300.00626 * 3 2 1 37 37 H 1.09002 * 109.46963 * 60.00376 * 3 2 1 38 38 H 1.07997 * 127.24757 * 0.02562 * 5 4 3 39 39 H 1.09000 * 109.58759 * 246.16261 * 10 9 7 40 40 H 1.08998 * 109.58895 * 6.44911 * 10 9 7 41 41 H 1.08995 * 109.49787 * 174.58546 * 11 10 9 42 42 H 1.09000 * 109.50058 * 294.68489 * 11 10 9 43 43 H 1.08994 * 109.46573 * 58.65524 * 12 11 10 44 44 H 1.09000 * 109.45773 * 178.61568 * 12 11 10 45 45 H 1.08997 * 109.49446 * 181.31915 * 13 12 11 46 46 H 1.09005 * 109.49393 * 301.38001 * 13 12 11 47 47 H 1.08999 * 109.47513 * 56.94591 * 18 16 14 48 48 H 1.08996 * 109.46994 * 176.95054 * 18 16 14 49 49 H 1.09007 * 109.46928 * 296.94694 * 18 16 14 50 50 H 0.97002 * 120.00100 * 334.99969 * 19 16 14 51 51 H 0.97000 * 120.00273 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3504 1.3475 -1.0847 6 6 5.6723 1.3920 -0.5817 7 6 6.9169 1.3224 -1.3740 8 8 6.8662 1.3389 -2.5885 9 7 8.1090 1.2404 -0.7504 10 6 8.1811 1.0489 0.7045 11 6 9.0646 -0.1676 0.9985 12 6 10.4241 0.0186 0.3209 13 6 10.2313 0.1208 -1.1940 14 6 9.3610 1.3350 -1.5135 15 1 9.8916 2.2451 -1.2337 16 6 9.0484 1.3597 -3.0110 17 1 8.3264 2.1495 -3.2184 18 6 10.3345 1.6252 -3.7961 19 7 8.4881 0.0676 -3.4143 20 6 7.6773 -0.0137 -4.5148 21 1 7.4513 0.8748 -5.0858 22 6 7.1468 -1.2381 -4.8972 23 7 7.4226 -2.3209 -4.2017 24 14 6.0414 -1.3490 -6.3990 25 1 6.7882 -0.8914 -7.5982 26 1 5.6084 -2.7562 -6.5921 27 1 4.8484 -0.4874 -6.2002 28 7 5.5817 1.5075 0.7282 29 7 4.3476 1.5445 1.0832 30 1 4.0358 1.6307 1.9977 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.6766 1.9563 -0.8899 37 1 1.6767 1.9563 0.8900 38 1 4.0465 1.2576 -2.1171 39 1 8.6135 1.9353 1.1688 40 1 7.1799 0.8803 1.1010 41 1 9.2048 -0.2637 2.0751 42 1 8.5855 -1.0671 0.6118 43 1 10.8918 0.9314 0.6897 44 1 11.0634 -0.8343 0.5488 45 1 11.2019 0.2300 -1.6777 46 1 9.7418 -0.7817 -1.5601 47 1 11.0756 0.8657 -3.5472 48 1 10.1219 1.5891 -4.8646 49 1 10.7222 2.6102 -3.5359 50 1 8.6913 -0.7305 -2.9017 51 1 7.0516 -3.1765 -4.4687 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731298189.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:32 Heat of formation + Delta-G solvation = 63.841851 kcal Electronic energy + Delta-G solvation = -31032.486814 eV Core-core repulsion = 27162.353227 eV Total energy + Delta-G solvation = -3870.133587 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.66512 -41.26803 -38.12712 -36.88088 -36.19906 -34.14422 -33.70269 -32.58050 -31.85190 -31.16435 -29.66417 -27.43773 -26.73184 -25.71443 -24.81638 -23.92464 -22.88572 -21.93302 -21.63754 -21.24835 -19.49297 -18.98532 -18.70529 -17.38045 -16.85642 -16.77501 -16.31704 -15.96063 -15.83428 -15.65594 -15.40660 -15.05124 -14.84378 -14.78867 -14.48202 -14.33537 -14.05649 -13.91767 -13.77749 -13.50766 -13.26503 -13.06014 -12.97144 -12.74351 -12.60664 -12.48690 -12.32285 -12.23389 -12.13944 -12.13371 -11.76315 -11.68270 -11.58224 -11.41385 -11.26145 -10.96228 -10.78184 -10.23409 -9.89477 -9.86128 -9.27807 -8.57192 -7.72290 -4.90496 0.67361 1.17698 1.43423 1.47857 1.52899 1.92298 2.30192 2.68221 2.69757 3.40704 3.60926 3.69177 3.82711 3.99584 4.00546 4.08557 4.14202 4.15607 4.27869 4.34887 4.40493 4.47366 4.50427 4.56830 4.66895 4.74306 4.80829 4.81612 4.90516 4.93415 4.96261 4.97966 5.03507 5.08369 5.11084 5.16933 5.22370 5.27577 5.31267 5.32489 5.40528 5.44806 5.48868 5.59314 5.62817 5.70148 6.01097 6.21525 6.50489 6.69850 6.96665 7.54125 7.63671 8.35906 8.60242 9.53133 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008454 B = 0.005248 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3311.116513 B = 5334.002799 C = 7729.342936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.043 4.043 4 C 0.041 3.959 5 C -0.212 4.212 6 C -0.020 4.020 7 C 0.560 3.440 8 O -0.495 6.495 9 N -0.599 5.599 10 C 0.091 3.909 11 C -0.130 4.130 12 C -0.109 4.109 13 C -0.128 4.128 14 C 0.149 3.851 15 H 0.093 0.907 16 C 0.166 3.834 17 H 0.054 0.946 18 C -0.160 4.160 19 N -0.703 5.703 20 C -0.153 4.153 21 H 0.053 0.947 22 C -0.097 4.097 23 N -0.984 5.984 24 Si 0.954 3.046 25 H -0.284 1.284 26 H -0.300 1.300 27 H -0.291 1.291 28 N -0.260 5.260 29 N -0.366 5.366 30 H 0.460 0.540 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.042 0.958 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.135 0.865 39 H 0.080 0.920 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.032 0.968 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.035 0.965 47 H 0.050 0.950 48 H 0.030 0.970 49 H 0.069 0.931 50 H 0.367 0.633 51 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.049 10.471 19.565 23.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.082 4.082 4 C -0.086 4.086 5 C -0.241 4.241 6 C -0.179 4.179 7 C 0.345 3.655 8 O -0.366 6.366 9 N -0.334 5.334 10 C -0.031 4.031 11 C -0.169 4.169 12 C -0.147 4.147 13 C -0.167 4.167 14 C 0.045 3.955 15 H 0.111 0.889 16 C 0.057 3.943 17 H 0.072 0.928 18 C -0.220 4.220 19 N -0.344 5.344 20 C -0.286 4.286 21 H 0.071 0.929 22 C -0.286 4.286 23 N -0.640 5.640 24 Si 0.786 3.214 25 H -0.211 1.211 26 H -0.226 1.226 27 H -0.219 1.219 28 N -0.097 5.097 29 N -0.082 5.082 30 H 0.309 0.691 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.112 0.888 37 H 0.129 0.871 38 H 0.153 0.847 39 H 0.098 0.902 40 H 0.134 0.866 41 H 0.117 0.883 42 H 0.051 0.949 43 H 0.103 0.897 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.053 0.947 47 H 0.069 0.931 48 H 0.049 0.951 49 H 0.088 0.912 50 H 0.201 0.799 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -5.512 10.661 19.656 23.030 hybrid contribution -1.129 -1.043 -1.543 2.178 sum -6.641 9.618 18.112 21.556 Atomic orbital electron populations 1.21744 0.93758 1.02214 1.02819 1.21525 0.97195 0.95468 1.01857 1.20341 0.83663 0.98413 1.05773 1.21624 0.96147 1.04656 0.86170 1.21546 0.91469 1.10831 1.00220 1.22152 0.95426 1.09825 0.90504 1.17590 0.82564 0.78545 0.86794 1.91091 1.85542 1.46928 1.13066 1.47780 1.04342 1.72561 1.08734 1.22437 1.03742 0.98124 0.78846 1.21903 0.96016 0.97265 1.01675 1.21490 0.96865 1.03019 0.93278 1.21851 0.99534 0.97455 0.97814 1.21478 0.84080 0.98577 0.91317 0.88901 1.20764 0.92596 0.89920 0.91010 0.92805 1.22418 0.98812 1.00758 1.00017 1.42507 1.55837 1.04581 1.31443 1.19193 1.16852 0.91836 1.00730 0.92902 1.25163 1.04760 0.95935 1.02718 1.69795 1.52647 0.98164 1.43366 0.85436 0.79585 0.75393 0.80944 1.21056 1.22635 1.21883 1.73286 1.01934 1.20949 1.13508 1.43465 1.02382 1.51867 1.10525 0.69119 0.92697 0.92384 0.90810 0.91654 0.93914 0.88800 0.87060 0.84663 0.90186 0.86600 0.88299 0.94883 0.89655 0.91144 0.90015 0.94659 0.93135 0.95053 0.91238 0.79856 0.95261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 71.98 0.71 -1.16 16 2 C -0.12 -2.04 5.92 30.59 0.18 -1.86 16 3 C -0.04 -0.65 5.77 29.85 0.17 -0.48 16 4 C 0.04 0.97 6.48 41.40 0.27 1.24 16 5 C -0.21 -7.41 10.74 22.41 0.24 -7.17 16 6 C -0.02 -0.73 6.82 42.46 0.29 -0.44 16 7 C 0.56 24.45 7.41 86.74 0.64 25.10 16 8 O -0.50 -26.05 9.62 -3.93 -0.04 -26.09 16 9 N -0.60 -21.84 2.98 -799.35 -2.38 -24.22 16 10 C 0.09 2.54 6.10 86.36 0.53 3.07 16 11 C -0.13 -3.37 6.08 30.67 0.19 -3.19 16 12 C -0.11 -2.70 5.89 30.63 0.18 -2.52 16 13 C -0.13 -4.23 4.86 30.53 0.15 -4.08 16 14 C 0.15 5.26 2.70 44.83 0.12 5.38 16 15 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 16 C 0.17 7.30 1.88 44.99 0.08 7.38 16 17 H 0.05 2.67 5.93 -4.80 -0.03 2.64 16 18 C -0.16 -6.11 9.35 71.98 0.67 -5.44 16 19 N -0.70 -38.55 3.63 -322.94 -1.17 -39.72 16 20 C -0.15 -9.41 7.95 84.03 0.67 -8.74 16 21 H 0.05 3.30 7.83 -2.91 -0.02 3.28 16 22 C -0.10 -6.15 5.50 84.86 0.47 -5.68 16 23 N -0.98 -65.78 13.06 21.65 0.28 -65.49 16 24 Si 0.95 51.90 29.55 68.60 2.03 53.93 16 25 H -0.28 -14.83 7.11 99.48 0.71 -14.13 16 26 H -0.30 -16.28 7.11 99.48 0.71 -15.57 16 27 H -0.29 -15.64 7.11 99.48 0.71 -14.93 16 28 N -0.26 -7.38 8.73 -48.18 -0.42 -7.80 16 29 N -0.37 -7.48 6.83 -47.93 -0.33 -7.81 16 30 H 0.46 4.86 8.96 -220.00 -1.97 2.89 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.14 5.28 8.06 -2.91 -0.02 5.26 16 39 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.12 3.33 4.21 -20.29 -0.09 3.24 16 41 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.08 2.47 6.85 -2.39 -0.02 2.45 16 46 H 0.03 1.50 5.98 -2.38 -0.01 1.49 16 47 H 0.05 1.85 6.64 -2.39 -0.02 1.83 16 48 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 50 H 0.37 21.64 5.57 -92.71 -0.52 21.12 16 51 H 0.24 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -82.82 389.53 1.90 -80.92 By element: Atomic # 1 Polarization: 36.50 SS G_CDS: -1.64 Total: 34.86 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 5.56 Total: 1.41 kcal Atomic # 7 Polarization: -141.02 SS G_CDS: -4.02 Total: -145.04 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.04 Total: -26.09 kcal Atomic # 14 Polarization: 51.90 SS G_CDS: 2.03 Total: 53.93 kcal Total: -82.82 1.90 -80.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731298189.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.765 kcal (2) G-P(sol) polarization free energy of solvation -82.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds