Wall clock time and date at job start Tue Mar 31 2020 19:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47341 * 2 1 4 4 C 1.50706 * 109.47234 * 180.02562 * 3 2 1 5 5 C 1.35366 * 126.38178 * 275.29376 * 4 3 2 6 6 C 1.41505 * 105.49947 * 180.14290 * 5 4 3 7 7 C 1.47711 * 126.51380 * 179.84550 * 6 5 4 8 8 O 1.21567 * 120.00630 * 3.92104 * 7 6 5 9 9 N 1.34780 * 119.99479 * 184.19357 * 7 6 5 10 10 C 1.46927 * 120.63114 * 353.66877 * 9 7 6 11 11 C 1.53195 * 108.77521 * 233.58405 * 10 9 7 12 12 C 1.53043 * 109.31371 * 305.36682 * 11 10 9 13 13 C 1.53045 * 109.53722 * 61.36602 * 12 11 10 14 14 C 1.46930 * 120.62801 * 173.38993 * 9 7 6 15 15 H 1.08998 * 109.58707 * 246.19965 * 14 9 7 16 16 C 1.52999 * 109.58597 * 6.62952 * 14 9 7 17 17 H 1.09002 * 109.46683 * 306.30569 * 16 14 9 18 18 C 1.53003 * 109.46966 * 186.31227 * 16 14 9 19 19 N 1.46501 * 109.47427 * 66.30736 * 16 14 9 20 20 C 1.36935 * 120.00072 * 204.99669 * 19 16 14 21 21 H 1.08002 * 119.99784 * 0.02562 * 20 19 16 22 22 C 1.38810 * 119.99798 * 180.02562 * 20 19 16 23 23 N 1.31617 * 119.99954 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99794 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47178 * 60.00044 * 24 22 20 26 26 H 1.48501 * 109.46928 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46796 * 299.99838 * 24 22 20 28 28 N 1.31804 * 106.96367 * 359.58126 * 6 5 4 29 29 N 1.28466 * 110.07691 * 0.26238 * 28 6 5 30 30 H 0.96998 * 124.89229 * 179.97438 * 29 28 6 31 31 H 1.09003 * 109.46546 * 60.00138 * 1 2 3 32 32 H 1.09000 * 109.47279 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47140 * 300.00581 * 1 2 3 34 34 H 1.09007 * 109.47511 * 239.99579 * 2 1 3 35 35 H 1.09002 * 109.47059 * 119.99962 * 2 1 3 36 36 H 1.09001 * 109.47478 * 59.99626 * 3 2 1 37 37 H 1.09003 * 109.47188 * 299.99469 * 3 2 1 38 38 H 1.07998 * 127.25075 * 0.02562 * 5 4 3 39 39 H 1.08993 * 109.58702 * 353.37335 * 10 9 7 40 40 H 1.09002 * 109.58584 * 113.80234 * 10 9 7 41 41 H 1.09000 * 109.49260 * 65.31885 * 11 10 9 42 42 H 1.08994 * 109.49707 * 185.38012 * 11 10 9 43 43 H 1.09000 * 109.46017 * 181.38521 * 12 11 10 44 44 H 1.08994 * 109.46237 * 301.35815 * 12 11 10 45 45 H 1.08994 * 109.49502 * 58.58354 * 13 12 11 46 46 H 1.08999 * 109.49767 * 178.68570 * 13 12 11 47 47 H 1.09003 * 109.46681 * 294.97067 * 18 16 14 48 48 H 1.08998 * 109.47217 * 54.97140 * 18 16 14 49 49 H 1.09002 * 109.46784 * 174.97280 * 18 16 14 50 50 H 0.97000 * 119.99519 * 25.00060 * 19 16 14 51 51 H 0.97010 * 119.99749 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.3505 1.3417 1.0842 6 6 5.6724 1.3917 0.5817 7 6 6.9170 1.3226 1.3741 8 8 6.8640 1.1400 2.5748 9 7 8.1114 1.4676 0.7667 10 6 8.2009 1.5563 -0.6972 11 6 9.1951 0.5024 -1.1952 12 6 10.5312 0.6852 -0.4715 13 6 10.3299 0.4867 1.0326 14 6 9.3481 1.5460 1.5561 15 1 9.7866 2.5383 1.4508 16 6 9.0346 1.2742 3.0288 17 1 8.2431 1.9457 3.3616 18 6 10.2908 1.5104 3.8697 19 7 8.5953 -0.1145 3.1864 20 6 7.7956 -0.4640 4.2416 21 1 7.4883 0.2841 4.9573 22 6 7.3798 -1.7799 4.3912 23 7 7.7547 -2.6917 3.5191 24 14 6.2882 -2.2567 5.8302 25 1 5.0210 -1.4850 5.7671 26 1 5.9876 -3.7094 5.7634 27 1 6.9889 -1.9547 7.1042 28 7 5.5818 1.5058 -0.7283 29 7 4.3477 1.5368 -1.0839 30 1 4.0358 1.6168 -1.9989 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.6768 1.9563 -0.8900 38 1 4.0466 1.2456 2.1160 39 1 7.2205 1.3695 -1.1352 40 1 8.5478 2.5494 -0.9826 41 1 8.8030 -0.4935 -0.9892 42 1 9.3431 0.6204 -2.2686 43 1 11.2479 -0.0478 -0.8418 44 1 10.9105 1.6899 -0.6574 45 1 9.9272 -0.5091 1.2175 46 1 11.2860 0.5939 1.5449 47 1 11.0526 0.7797 3.5978 48 1 10.6688 2.5157 3.6837 49 1 10.0459 1.4040 4.9265 50 1 8.8711 -0.7863 2.5434 51 1 7.4638 -3.6113 3.6235 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731298198.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:46 Heat of formation + Delta-G solvation = 64.661129 kcal Electronic energy + Delta-G solvation = -31027.788106 eV Core-core repulsion = 27157.690045 eV Total energy + Delta-G solvation = -3870.098060 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.66537 -41.24273 -38.10232 -36.87788 -36.19758 -34.13591 -33.70200 -32.57797 -31.86304 -31.13491 -29.66782 -27.44181 -26.73372 -25.71228 -24.79327 -23.91901 -22.88928 -21.92630 -21.63925 -21.25425 -19.50906 -18.98812 -18.74592 -17.39136 -16.87776 -16.67690 -16.30616 -15.96767 -15.84395 -15.64399 -15.42278 -15.05687 -14.84230 -14.75879 -14.48291 -14.34090 -14.04665 -13.93683 -13.79754 -13.47843 -13.26214 -13.05937 -12.97103 -12.74659 -12.60628 -12.48235 -12.34178 -12.26681 -12.14347 -12.13516 -11.78098 -11.68466 -11.58411 -11.41117 -11.26260 -10.84347 -10.73625 -10.26094 -9.90329 -9.84972 -9.27627 -8.57645 -7.72759 -4.90987 0.67517 1.18089 1.43063 1.47585 1.52600 1.91340 2.32745 2.67515 2.69642 3.41646 3.60724 3.69218 3.82837 3.99368 4.00887 4.09242 4.15016 4.15890 4.28261 4.34452 4.40782 4.47347 4.50443 4.56733 4.67451 4.73935 4.81548 4.81801 4.90958 4.93376 4.96554 4.98150 5.04302 5.09805 5.11171 5.16706 5.22795 5.27690 5.31564 5.32478 5.42562 5.44998 5.49745 5.59573 5.63432 5.70020 6.01344 6.22751 6.50034 6.70643 6.99172 7.53888 7.63865 8.35613 8.59827 9.52688 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008463 B = 0.005247 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3307.662751 B = 5335.431838 C = 7752.335681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.043 4.043 4 C 0.042 3.958 5 C -0.212 4.212 6 C -0.018 4.018 7 C 0.560 3.440 8 O -0.496 6.496 9 N -0.599 5.599 10 C 0.079 3.921 11 C -0.128 4.128 12 C -0.110 4.110 13 C -0.126 4.126 14 C 0.148 3.852 15 H 0.094 0.906 16 C 0.165 3.835 17 H 0.056 0.944 18 C -0.158 4.158 19 N -0.704 5.704 20 C -0.153 4.153 21 H 0.054 0.946 22 C -0.097 4.097 23 N -0.984 5.984 24 Si 0.954 3.046 25 H -0.291 1.291 26 H -0.300 1.300 27 H -0.283 1.283 28 N -0.263 5.263 29 N -0.367 5.367 30 H 0.460 0.540 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.042 0.958 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.139 0.861 39 H 0.130 0.870 40 H 0.077 0.923 41 H 0.032 0.968 42 H 0.098 0.902 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.034 0.966 46 H 0.080 0.920 47 H 0.045 0.955 48 H 0.071 0.929 49 H 0.031 0.969 50 H 0.367 0.633 51 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.230 13.499 -17.288 23.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.081 4.081 4 C -0.085 4.085 5 C -0.240 4.240 6 C -0.177 4.177 7 C 0.345 3.655 8 O -0.367 6.367 9 N -0.334 5.334 10 C -0.043 4.043 11 C -0.166 4.166 12 C -0.147 4.147 13 C -0.165 4.165 14 C 0.045 3.955 15 H 0.112 0.888 16 C 0.057 3.943 17 H 0.074 0.926 18 C -0.219 4.219 19 N -0.344 5.344 20 C -0.286 4.286 21 H 0.072 0.928 22 C -0.286 4.286 23 N -0.640 5.640 24 Si 0.787 3.213 25 H -0.219 1.219 26 H -0.227 1.227 27 H -0.210 1.210 28 N -0.100 5.100 29 N -0.083 5.083 30 H 0.308 0.692 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.114 0.886 37 H 0.129 0.871 38 H 0.157 0.843 39 H 0.146 0.854 40 H 0.095 0.905 41 H 0.051 0.949 42 H 0.116 0.884 43 H 0.088 0.912 44 H 0.103 0.897 45 H 0.053 0.947 46 H 0.098 0.902 47 H 0.064 0.936 48 H 0.090 0.910 49 H 0.050 0.950 50 H 0.201 0.799 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.708 13.530 -17.376 23.021 hybrid contribution -0.983 -1.305 1.321 2.101 sum -7.690 12.224 -16.055 21.595 Atomic orbital electron populations 1.21742 0.93705 1.02186 1.02868 1.21532 0.97238 0.95560 1.01807 1.20345 0.83605 0.98311 1.05871 1.21652 0.96166 1.04572 0.86154 1.21556 0.91277 1.10762 1.00395 1.22182 0.95499 1.09523 0.90517 1.17594 0.82617 0.78291 0.86949 1.91074 1.85753 1.45410 1.14510 1.47792 1.04870 1.72868 1.07857 1.22670 1.04005 0.99219 0.78437 1.21870 0.95597 0.98108 1.01061 1.21498 0.97058 1.02948 0.93215 1.21973 0.98889 0.98129 0.97509 1.21688 0.84096 0.98973 0.90790 0.88847 1.20777 0.93680 0.87754 0.92121 0.92613 1.22405 0.98925 1.00710 0.99833 1.42506 1.57665 1.04587 1.29650 1.19204 1.17699 0.91436 1.00289 0.92840 1.25174 1.04930 0.96632 1.01904 1.69800 1.53615 1.01044 1.39549 0.85431 0.79514 0.75905 0.80481 1.21855 1.22666 1.21013 1.73077 1.01842 1.21465 1.13582 1.43509 1.02410 1.51874 1.10493 0.69190 0.90832 0.92783 0.92237 0.91867 0.93883 0.88553 0.87090 0.84292 0.85367 0.90474 0.94892 0.88357 0.91187 0.89721 0.94696 0.90176 0.93552 0.91036 0.95006 0.79879 0.95279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 71.98 0.71 -1.13 16 2 C -0.12 -2.06 5.92 30.59 0.18 -1.88 16 3 C -0.04 -0.63 5.77 29.85 0.17 -0.45 16 4 C 0.04 0.98 6.48 41.40 0.27 1.24 16 5 C -0.21 -7.25 10.73 22.41 0.24 -7.01 16 6 C -0.02 -0.66 6.90 42.46 0.29 -0.37 16 7 C 0.56 24.48 7.41 86.75 0.64 25.12 16 8 O -0.50 -26.04 9.63 -3.93 -0.04 -26.08 16 9 N -0.60 -21.90 2.96 -797.73 -2.36 -24.26 16 10 C 0.08 2.23 6.22 86.36 0.54 2.77 16 11 C -0.13 -3.34 6.08 30.67 0.19 -3.15 16 12 C -0.11 -2.74 5.88 30.62 0.18 -2.56 16 13 C -0.13 -4.21 4.89 30.82 0.15 -4.06 16 14 C 0.15 5.24 2.73 45.12 0.12 5.37 16 15 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 16 C 0.17 7.29 1.88 44.99 0.08 7.37 16 17 H 0.06 2.76 5.92 -5.63 -0.03 2.73 16 18 C -0.16 -6.07 9.18 71.98 0.66 -5.41 16 19 N -0.70 -38.65 3.62 -322.93 -1.17 -39.82 16 20 C -0.15 -9.43 7.96 84.03 0.67 -8.76 16 21 H 0.05 3.34 7.83 -2.91 -0.02 3.32 16 22 C -0.10 -6.21 5.50 84.86 0.47 -5.74 16 23 N -0.98 -65.99 13.06 21.65 0.28 -65.71 16 24 Si 0.95 51.99 29.55 68.60 2.03 54.02 16 25 H -0.29 -15.64 7.11 99.48 0.71 -14.93 16 26 H -0.30 -16.33 7.11 99.48 0.71 -15.62 16 27 H -0.28 -14.82 7.11 99.48 0.71 -14.11 16 28 N -0.26 -7.57 8.57 -48.18 -0.41 -7.98 16 29 N -0.37 -7.57 6.83 -47.92 -0.33 -7.90 16 30 H 0.46 4.99 8.96 -220.00 -1.97 3.02 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.14 5.21 8.06 -2.91 -0.02 5.19 16 39 H 0.13 3.68 3.89 -68.05 -0.26 3.42 16 40 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.03 1.07 8.14 -2.39 -0.02 1.06 16 42 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.03 1.49 6.04 -2.39 -0.01 1.48 16 46 H 0.08 2.44 7.05 -2.39 -0.02 2.43 16 47 H 0.05 1.75 7.03 -2.39 -0.02 1.74 16 48 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 49 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.37 21.70 5.59 -92.71 -0.52 21.19 16 51 H 0.24 15.71 8.31 -92.70 -0.77 14.94 16 Total: -1.00 -83.06 389.81 1.74 -81.31 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: -1.82 Total: 35.08 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 5.57 Total: 1.34 kcal Atomic # 7 Polarization: -141.68 SS G_CDS: -3.99 Total: -145.67 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.04 Total: -26.08 kcal Atomic # 14 Polarization: 51.99 SS G_CDS: 2.03 Total: 54.02 kcal Total: -83.06 1.74 -81.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731298198.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.975 kcal (2) G-P(sol) polarization free energy of solvation -83.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds