Wall clock time and date at job start Tue Mar 31 2020 19:50:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53012 * 1
3 3 C 1.53001 * 109.46847 * 2 1
4 4 C 1.50699 * 109.46654 * 179.97438 * 3 2 1
5 5 C 1.35364 * 126.38283 * 85.00715 * 4 3 2
6 6 C 1.41506 * 105.50483 * 179.97438 * 5 4 3
7 7 C 1.47704 * 126.51616 * 179.97438 * 6 5 4
8 8 O 1.21567 * 120.00685 * 6.89766 * 7 6 5
9 9 N 1.34788 * 119.99791 * 186.89474 * 7 6 5
10 10 C 1.46927 * 120.62804 * 6.83344 * 9 7 6
11 11 C 1.53190 * 108.77435 * 126.36562 * 10 9 7
12 12 C 1.53043 * 109.31291 * 54.63734 * 11 10 9
13 13 C 1.53038 * 109.53464 * 298.63211 * 12 11 10
14 14 C 1.46924 * 120.63247 * 186.80685 * 9 7 6
15 15 H 1.08995 * 109.58536 * 113.70493 * 14 9 7
16 16 C 1.53008 * 109.58521 * 353.41867 * 14 9 7
17 17 H 1.08996 * 109.47292 * 308.08580 * 16 14 9
18 18 C 1.52996 * 109.46769 * 188.08397 * 16 14 9
19 19 N 1.46502 * 109.46788 * 68.08539 * 16 14 9
20 20 C 1.36931 * 119.99548 * 189.01886 * 19 16 14
21 21 H 1.08001 * 120.00188 * 0.02562 * 20 19 16
22 22 C 1.38816 * 119.99869 * 179.72361 * 20 19 16
23 23 N 1.31614 * 119.99978 * 0.02562 * 22 20 19
24 24 Si 1.86806 * 120.00099 * 179.97438 * 22 20 19
25 25 H 1.48501 * 109.46922 * 60.00461 * 24 22 20
26 26 H 1.48503 * 109.46991 * 180.02562 * 24 22 20
27 27 H 1.48496 * 109.47113 * 300.00523 * 24 22 20
28 28 N 1.31809 * 106.95792 * 0.23841 * 6 5 4
29 29 N 1.28461 * 110.07701 * 359.59329 * 28 6 5
30 30 H 0.97000 * 124.88307 * 180.19883 * 29 28 6
31 31 H 1.09002 * 109.46941 * 179.97438 * 1 2 3
32 32 H 1.09004 * 109.46623 * 299.99795 * 1 2 3
33 33 H 1.09001 * 109.46741 * 60.00013 * 1 2 3
34 34 H 1.09004 * 109.46623 * 240.00205 * 2 1 3
35 35 H 1.09001 * 109.46741 * 119.99987 * 2 1 3
36 36 H 1.09003 * 109.46799 * 60.00108 * 3 2 1
37 37 H 1.08997 * 109.47179 * 299.99982 * 3 2 1
38 38 H 1.07998 * 127.24834 * 359.94968 * 5 4 3
39 39 H 1.08997 * 109.58183 * 246.15580 * 10 9 7
40 40 H 1.08999 * 109.58662 * 6.43644 * 10 9 7
41 41 H 1.09007 * 109.49346 * 174.58252 * 11 10 9
42 42 H 1.08996 * 109.50195 * 294.68083 * 11 10 9
43 43 H 1.09003 * 109.46268 * 58.64794 * 12 11 10
44 44 H 1.08997 * 109.45877 * 178.61518 * 12 11 10
45 45 H 1.09001 * 109.50128 * 301.41261 * 13 12 11
46 46 H 1.09007 * 109.49919 * 181.31997 * 13 12 11
47 47 H 1.08997 * 109.47396 * 60.00416 * 18 16 14
48 48 H 1.09003 * 109.46775 * 180.02562 * 18 16 14
49 49 H 1.09001 * 109.47741 * 299.99944 * 18 16 14
50 50 H 0.96993 * 120.00268 * 9.02083 * 19 16 14
51 51 H 0.96998 * 120.00236 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 3.5470 1.4425 0.0006
5 6 4.3504 1.3475 -1.0847
6 6 5.6724 1.3920 -0.5818
7 6 6.9170 1.3223 -1.3741
8 8 6.8664 1.3421 -2.5886
9 7 8.1089 1.2367 -0.7506
10 6 8.1806 1.0616 0.7065
11 6 9.0530 -0.1595 1.0139
12 6 10.4136 0.0062 0.3331
13 6 10.2203 0.0924 -1.1826
14 6 9.3611 1.3163 -1.5150
15 1 9.8971 2.2260 -1.2445
16 6 9.0477 1.3316 -3.0126
17 1 8.3947 0.4934 -3.2557
18 6 10.3495 1.2111 -3.8072
19 7 8.3787 2.5881 -3.3586
20 6 7.8356 2.7540 -4.6047
21 1 7.9001 1.9584 -5.3321
22 6 7.1967 3.9425 -4.9307
23 7 7.1134 4.9100 -4.0424
24 14 6.4565 4.1691 -6.6308
25 1 5.4211 3.1300 -6.8624
26 1 5.8371 5.5154 -6.7256
27 1 7.5232 4.0421 -7.6561
28 7 5.5817 1.5017 0.7286
29 7 4.3477 1.5379 1.0838
30 1 4.0360 1.6186 1.9988
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3633 0.5138 0.8901
33 1 -0.3633 0.5138 -0.8900
34 1 1.8934 -0.5138 -0.8901
35 1 1.8934 -0.5138 0.8900
36 1 1.6767 1.9563 0.8900
37 1 1.6767 1.9563 -0.8900
38 1 4.0465 1.2564 -2.1170
39 1 8.6215 1.9493 1.1599
40 1 7.1782 0.9069 1.1057
41 1 9.1934 -0.2442 2.0916
42 1 8.5654 -1.0590 0.6383
43 1 10.8900 0.9190 0.6908
44 1 11.0451 -0.8499 0.5705
45 1 9.7216 -0.8095 -1.5377
46 1 11.1915 0.1869 -1.6685
47 1 10.8472 0.2762 -3.5497
48 1 10.1263 1.2225 -4.8741
49 1 11.0025 2.0493 -3.5642
50 1 8.3205 3.3026 -2.7052
51 1 6.6673 5.7406 -4.2703
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001731298199.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:50:53
Heat of formation + Delta-G solvation = 86.282298 kcal
Electronic energy + Delta-G solvation = -30793.507341 eV
Core-core repulsion = 26924.346844 eV
Total energy + Delta-G solvation = -3869.160496 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.211 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-42.44068 -39.77129 -36.66742 -35.53615 -35.02962 -32.58074 -32.08742 -31.29921
-30.80228 -29.72115 -27.67073 -26.57323 -25.38797 -24.10712 -23.02392 -22.39599
-22.03391 -20.80784 -20.28823 -19.82645 -18.43500 -17.58349 -16.71213 -16.00135
-15.52819 -15.30710 -15.21290 -14.72992 -14.37229 -14.23538 -13.85482 -13.66039
-13.45920 -13.29587 -13.18865 -13.15538 -12.92155 -12.69566 -12.37724 -12.19871
-11.99897 -11.82497 -11.60381 -11.51096 -11.24930 -11.13573 -10.99706 -10.90439
-10.70664 -10.59365 -10.53482 -10.43472 -10.11594 -9.75539 -9.57620 -9.33462
-9.03378 -8.70190 -8.55935 -8.26217 -7.82501 -6.39458 -5.42136 -2.62099
1.96767 2.48226 3.00955 3.62383 3.64355 3.65951 3.67805 4.19292
4.52263 4.68229 4.82004 4.84955 4.87437 5.01324 5.12003 5.12954
5.19442 5.26579 5.38816 5.49913 5.54463 5.58081 5.66023 5.75095
5.79942 5.81446 5.87788 5.90100 5.96917 6.01801 6.04537 6.05454
6.14550 6.19171 6.22356 6.27885 6.29444 6.34995 6.49420 6.56644
6.61570 6.74642 6.91356 7.09287 7.15778 7.28123 7.55391 8.00858
8.08422 8.25979 8.75100 9.15836 9.86385 10.44731 10.79817 11.82108
Molecular weight = 334.21amu
Principal moments of inertia in cm(-1)
A = 0.007881 B = 0.005142 C = 0.003360
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3551.865243 B = 5444.271395 C = 8331.983817
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.120 4.120
3 C -0.049 4.049
4 C 0.010 3.990
5 C -0.171 4.171
6 C 0.020 3.980
7 C 0.557 3.443
8 O -0.428 6.428
9 N -0.606 5.606
10 C 0.091 3.909
11 C -0.132 4.132
12 C -0.119 4.119
13 C -0.127 4.127
14 C 0.149 3.851
15 H 0.065 0.935
16 C 0.179 3.821
17 H 0.061 0.939
18 C -0.168 4.168
19 N -0.691 5.691
20 C -0.188 4.188
21 H 0.063 0.937
22 C -0.024 4.024
23 N -0.943 5.943
24 Si 0.897 3.103
25 H -0.290 1.290
26 H -0.296 1.296
27 H -0.291 1.291
28 N -0.274 5.274
29 N -0.394 5.394
30 H 0.437 0.563
31 H 0.055 0.945
32 H 0.053 0.947
33 H 0.057 0.943
34 H 0.070 0.930
35 H 0.059 0.941
36 H 0.072 0.928
37 H 0.091 0.909
38 H 0.159 0.841
39 H 0.054 0.946
40 H 0.122 0.878
41 H 0.065 0.935
42 H 0.061 0.939
43 H 0.061 0.939
44 H 0.057 0.943
45 H 0.064 0.936
46 H 0.074 0.926
47 H 0.037 0.963
48 H 0.054 0.946
49 H 0.044 0.956
50 H 0.378 0.622
51 H 0.248 0.752
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.313 -11.805 15.944 20.538
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.158 4.158
3 C -0.088 4.088
4 C -0.115 4.115
5 C -0.199 4.199
6 C -0.141 4.141
7 C 0.339 3.661
8 O -0.293 6.293
9 N -0.343 5.343
10 C -0.033 4.033
11 C -0.170 4.170
12 C -0.156 4.156
13 C -0.166 4.166
14 C 0.046 3.954
15 H 0.083 0.917
16 C 0.069 3.931
17 H 0.078 0.922
18 C -0.229 4.229
19 N -0.332 5.332
20 C -0.320 4.320
21 H 0.081 0.919
22 C -0.218 4.218
23 N -0.594 5.594
24 Si 0.731 3.269
25 H -0.218 1.218
26 H -0.222 1.222
27 H -0.219 1.219
28 N -0.110 5.110
29 N -0.106 5.106
30 H 0.280 0.720
31 H 0.074 0.926
32 H 0.072 0.928
33 H 0.077 0.923
34 H 0.089 0.911
35 H 0.078 0.922
36 H 0.090 0.910
37 H 0.109 0.891
38 H 0.177 0.823
39 H 0.072 0.928
40 H 0.139 0.861
41 H 0.083 0.917
42 H 0.079 0.921
43 H 0.079 0.921
44 H 0.076 0.924
45 H 0.083 0.917
46 H 0.093 0.907
47 H 0.056 0.944
48 H 0.073 0.927
49 H 0.063 0.937
50 H 0.211 0.789
51 H 0.058 0.942
Dipole moment (debyes) X Y Z Total
from point charges -4.770 -11.716 15.929 20.341
hybrid contribution -1.052 0.619 -0.747 1.431
sum -5.822 -11.098 15.182 19.686
Atomic orbital electron populations
1.21786 0.95448 1.01820 1.01971 1.21537 0.95770 0.95757 1.02741
1.20178 0.86795 0.97951 1.03844 1.21296 0.94645 1.08022 0.87578
1.21523 0.90764 1.08000 0.99619 1.22409 0.95972 1.06462 0.89227
1.17054 0.81183 0.80829 0.86992 1.91213 1.84386 1.42768 1.10928
1.47586 1.04948 1.74754 1.06986 1.22250 1.03383 0.96563 0.81112
1.21913 0.96296 0.99037 0.99798 1.21528 0.96855 1.01424 0.95839
1.21997 1.00214 0.98837 0.95541 1.21457 0.83837 0.96855 0.93275
0.91716 1.20495 0.91497 0.92796 0.88265 0.92159 1.22549 0.99458
0.98926 1.01923 1.42314 1.64770 1.12031 1.14068 1.19006 1.25868
0.97689 0.89436 0.91868 1.24550 1.02707 0.97189 0.97345 1.69641
1.50345 1.05914 1.33520 0.86375 0.79124 0.76371 0.85073 1.21785
1.22226 1.21884 1.73325 1.00458 1.21649 1.15536 1.43370 1.03400
1.54449 1.09360 0.72030 0.92594 0.92802 0.92347 0.91111 0.92177
0.90959 0.89094 0.82323 0.92780 0.86057 0.91675 0.92058 0.92071
0.92376 0.91676 0.90719 0.94417 0.92670 0.93734 0.78904 0.94242
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16
2 C -0.12 -0.97 5.92 -26.72 -0.16 -1.13 16
3 C -0.05 -0.44 5.77 -27.88 -0.16 -0.60 16
4 C 0.01 0.13 6.48 -82.21 -0.53 -0.40 16
5 C -0.17 -2.91 10.74 -39.36 -0.42 -3.33 16
6 C 0.02 0.38 6.83 -82.77 -0.57 -0.19 16
7 C 0.56 11.74 7.28 -12.39 -0.09 11.65 16
8 O -0.43 -10.73 10.12 5.31 0.05 -10.67 16
9 N -0.61 -10.97 2.97 -166.38 -0.49 -11.47 16
10 C 0.09 1.33 6.12 -3.71 -0.02 1.30 16
11 C -0.13 -1.58 6.08 -26.61 -0.16 -1.74 16
12 C -0.12 -1.41 5.88 -26.69 -0.16 -1.56 16
13 C -0.13 -1.80 4.60 -26.61 -0.12 -1.92 16
14 C 0.15 2.69 2.55 -67.60 -0.17 2.52 16
15 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16
16 C 0.18 3.87 1.81 -67.93 -0.12 3.75 16
17 H 0.06 1.44 6.38 -51.93 -0.33 1.10 16
18 C -0.17 -3.26 8.73 37.16 0.32 -2.94 16
19 N -0.69 -18.43 3.04 -53.42 -0.16 -18.60 16
20 C -0.19 -5.54 8.36 -15.06 -0.13 -5.67 16
21 H 0.06 1.86 7.80 -52.49 -0.41 1.45 16
22 C -0.02 -0.74 5.50 -17.43 -0.10 -0.84 16
23 N -0.94 -30.26 13.06 55.49 0.72 -29.53 16
24 Si 0.90 24.04 29.55 -169.99 -5.02 19.02 16
25 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16
26 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16
27 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16
28 N -0.27 -4.19 8.70 33.42 0.29 -3.90 16
29 N -0.39 -4.67 6.83 33.50 0.23 -4.44 16
30 H 0.44 3.37 8.96 -190.44 -1.71 1.66 16
31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16
32 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16
33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16
37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16
38 H 0.16 2.81 8.06 -52.49 -0.42 2.39 16
39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16
40 H 0.12 1.77 4.15 -71.94 -0.30 1.48 16
41 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16
42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16
43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
46 H 0.07 0.98 6.70 -51.93 -0.35 0.63 16
47 H 0.04 0.60 6.46 -51.93 -0.34 0.27 16
48 H 0.05 1.16 7.84 -51.93 -0.41 0.75 16
49 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16
50 H 0.38 10.95 7.57 -40.82 -0.31 10.64 16
51 H 0.25 7.79 8.31 -40.82 -0.34 7.45 16
LS Contribution 392.53 15.07 5.92 5.92
Total: -1.00 -35.32 392.53 -10.73 -46.05
By element:
Atomic # 1 Polarization: 19.44 SS G_CDS: -10.05 Total: 9.39 kcal
Atomic # 6 Polarization: 0.46 SS G_CDS: -2.22 Total: -1.76 kcal
Atomic # 7 Polarization: -68.53 SS G_CDS: 0.59 Total: -67.94 kcal
Atomic # 8 Polarization: -10.73 SS G_CDS: 0.05 Total: -10.67 kcal
Atomic # 14 Polarization: 24.04 SS G_CDS: -5.02 Total: 19.02 kcal
Total LS contribution 5.92 Total: 5.92 kcal
Total: -35.32 -10.73 -46.05 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001731298199.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 132.330 kcal
(2) G-P(sol) polarization free energy of solvation -35.317 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.013 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.731 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.048 kcal
(6) G-S(sol) free energy of system = (1) + (5) 86.282 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds