Wall clock time and date at job start Tue Mar 31 2020 19:50:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53012 * 1
3 3 C 1.53001 * 109.46847 * 2 1
4 4 C 1.50699 * 109.46654 * 179.97438 * 3 2 1
5 5 C 1.35364 * 126.38283 * 85.00715 * 4 3 2
6 6 C 1.41506 * 105.50483 * 179.97438 * 5 4 3
7 7 C 1.47704 * 126.51616 * 179.97438 * 6 5 4
8 8 O 1.21567 * 120.00685 * 6.89766 * 7 6 5
9 9 N 1.34788 * 119.99791 * 186.89474 * 7 6 5
10 10 C 1.46927 * 120.62804 * 6.83344 * 9 7 6
11 11 C 1.53190 * 108.77435 * 126.36562 * 10 9 7
12 12 C 1.53043 * 109.31291 * 54.63734 * 11 10 9
13 13 C 1.53038 * 109.53464 * 298.63211 * 12 11 10
14 14 C 1.46924 * 120.63247 * 186.80685 * 9 7 6
15 15 H 1.08995 * 109.58536 * 113.70493 * 14 9 7
16 16 C 1.53008 * 109.58521 * 353.41867 * 14 9 7
17 17 H 1.08996 * 109.47292 * 308.08580 * 16 14 9
18 18 C 1.52996 * 109.46769 * 188.08397 * 16 14 9
19 19 N 1.46502 * 109.46788 * 68.08539 * 16 14 9
20 20 C 1.36931 * 119.99548 * 189.01886 * 19 16 14
21 21 H 1.08001 * 120.00188 * 0.02562 * 20 19 16
22 22 C 1.38816 * 119.99869 * 179.72361 * 20 19 16
23 23 N 1.31614 * 119.99978 * 0.02562 * 22 20 19
24 24 Si 1.86806 * 120.00099 * 179.97438 * 22 20 19
25 25 H 1.48501 * 109.46922 * 60.00461 * 24 22 20
26 26 H 1.48503 * 109.46991 * 180.02562 * 24 22 20
27 27 H 1.48496 * 109.47113 * 300.00523 * 24 22 20
28 28 N 1.31809 * 106.95792 * 0.23841 * 6 5 4
29 29 N 1.28461 * 110.07701 * 359.59329 * 28 6 5
30 30 H 0.97000 * 124.88307 * 180.19883 * 29 28 6
31 31 H 1.09002 * 109.46941 * 179.97438 * 1 2 3
32 32 H 1.09004 * 109.46623 * 299.99795 * 1 2 3
33 33 H 1.09001 * 109.46741 * 60.00013 * 1 2 3
34 34 H 1.09004 * 109.46623 * 240.00205 * 2 1 3
35 35 H 1.09001 * 109.46741 * 119.99987 * 2 1 3
36 36 H 1.09003 * 109.46799 * 60.00108 * 3 2 1
37 37 H 1.08997 * 109.47179 * 299.99982 * 3 2 1
38 38 H 1.07998 * 127.24834 * 359.94968 * 5 4 3
39 39 H 1.08997 * 109.58183 * 246.15580 * 10 9 7
40 40 H 1.08999 * 109.58662 * 6.43644 * 10 9 7
41 41 H 1.09007 * 109.49346 * 174.58252 * 11 10 9
42 42 H 1.08996 * 109.50195 * 294.68083 * 11 10 9
43 43 H 1.09003 * 109.46268 * 58.64794 * 12 11 10
44 44 H 1.08997 * 109.45877 * 178.61518 * 12 11 10
45 45 H 1.09001 * 109.50128 * 301.41261 * 13 12 11
46 46 H 1.09007 * 109.49919 * 181.31997 * 13 12 11
47 47 H 1.08997 * 109.47396 * 60.00416 * 18 16 14
48 48 H 1.09003 * 109.46775 * 180.02562 * 18 16 14
49 49 H 1.09001 * 109.47741 * 299.99944 * 18 16 14
50 50 H 0.96993 * 120.00268 * 9.02083 * 19 16 14
51 51 H 0.96998 * 120.00236 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 3.5470 1.4425 0.0006
5 6 4.3504 1.3475 -1.0847
6 6 5.6724 1.3920 -0.5818
7 6 6.9170 1.3223 -1.3741
8 8 6.8664 1.3421 -2.5886
9 7 8.1089 1.2367 -0.7506
10 6 8.1806 1.0616 0.7065
11 6 9.0530 -0.1595 1.0139
12 6 10.4136 0.0062 0.3331
13 6 10.2203 0.0924 -1.1826
14 6 9.3611 1.3163 -1.5150
15 1 9.8971 2.2260 -1.2445
16 6 9.0477 1.3316 -3.0126
17 1 8.3947 0.4934 -3.2557
18 6 10.3495 1.2111 -3.8072
19 7 8.3787 2.5881 -3.3586
20 6 7.8356 2.7540 -4.6047
21 1 7.9001 1.9584 -5.3321
22 6 7.1967 3.9425 -4.9307
23 7 7.1134 4.9100 -4.0424
24 14 6.4565 4.1691 -6.6308
25 1 5.4211 3.1300 -6.8624
26 1 5.8371 5.5154 -6.7256
27 1 7.5232 4.0421 -7.6561
28 7 5.5817 1.5017 0.7286
29 7 4.3477 1.5379 1.0838
30 1 4.0360 1.6186 1.9988
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3633 0.5138 0.8901
33 1 -0.3633 0.5138 -0.8900
34 1 1.8934 -0.5138 -0.8901
35 1 1.8934 -0.5138 0.8900
36 1 1.6767 1.9563 0.8900
37 1 1.6767 1.9563 -0.8900
38 1 4.0465 1.2564 -2.1170
39 1 8.6215 1.9493 1.1599
40 1 7.1782 0.9069 1.1057
41 1 9.1934 -0.2442 2.0916
42 1 8.5654 -1.0590 0.6383
43 1 10.8900 0.9190 0.6908
44 1 11.0451 -0.8499 0.5705
45 1 9.7216 -0.8095 -1.5377
46 1 11.1915 0.1869 -1.6685
47 1 10.8472 0.2762 -3.5497
48 1 10.1263 1.2225 -4.8741
49 1 11.0025 2.0493 -3.5642
50 1 8.3205 3.3026 -2.7052
51 1 6.6673 5.7406 -4.2703
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001731298199.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:50:52
Heat of formation + Delta-G solvation = 63.220515 kcal
Electronic energy + Delta-G solvation = -30794.507375 eV
Core-core repulsion = 26924.346844 eV
Total energy + Delta-G solvation = -3870.160530 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.211 amu
Computer time = 1.15 seconds
Orbital eigenvalues (eV)
-43.65790 -41.25309 -38.10325 -36.92243 -36.19916 -34.25072 -33.68801 -32.57421
-31.84852 -31.42075 -29.36655 -27.43715 -26.84963 -25.93040 -24.42316 -23.87345
-22.86541 -21.89000 -21.63027 -21.28606 -19.93628 -18.75757 -18.72939 -17.36560
-16.82253 -16.73579 -16.61061 -15.94850 -15.70498 -15.52958 -15.44272 -14.96011
-14.80678 -14.73204 -14.53260 -14.38128 -14.22759 -13.95840 -13.74483 -13.50559
-13.42302 -13.04295 -12.98895 -12.74768 -12.59494 -12.44509 -12.40927 -12.20809
-12.13248 -12.10081 -11.74257 -11.67748 -11.57367 -11.52772 -11.22243 -10.89058
-10.81614 -10.26671 -9.93916 -9.85867 -9.36561 -8.52814 -7.75232 -4.93336
0.68559 1.18876 1.43790 1.48628 1.53469 1.92292 2.31619 2.65074
2.68270 3.43268 3.58270 3.69049 3.79998 3.87777 4.00161 4.08679
4.16750 4.18993 4.27603 4.33859 4.41506 4.45632 4.51952 4.59613
4.66294 4.74247 4.78488 4.83107 4.91235 4.93094 4.96907 4.98632
5.01948 5.10575 5.11778 5.16284 5.21011 5.23033 5.28512 5.33780
5.40806 5.44960 5.46708 5.52317 5.61627 5.65231 5.99165 6.21861
6.45453 6.68966 6.97509 7.50368 7.61111 8.29540 8.52935 9.49983
Molecular weight = 334.21amu
Principal moments of inertia in cm(-1)
A = 0.007881 B = 0.005142 C = 0.003360
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3551.865243 B = 5444.271395 C = 8331.983817
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.116 4.116
3 C -0.047 4.047
4 C 0.042 3.958
5 C -0.212 4.212
6 C -0.017 4.017
7 C 0.551 3.449
8 O -0.488 6.488
9 N -0.604 5.604
10 C 0.085 3.915
11 C -0.125 4.125
12 C -0.114 4.114
13 C -0.119 4.119
14 C 0.150 3.850
15 H 0.056 0.944
16 C 0.177 3.823
17 H 0.036 0.964
18 C -0.157 4.157
19 N -0.698 5.698
20 C -0.177 4.177
21 H 0.057 0.943
22 C -0.089 4.089
23 N -0.979 5.979
24 Si 0.959 3.041
25 H -0.290 1.290
26 H -0.298 1.298
27 H -0.281 1.281
28 N -0.264 5.264
29 N -0.368 5.368
30 H 0.460 0.540
31 H 0.060 0.940
32 H 0.068 0.932
33 H 0.054 0.946
34 H 0.051 0.949
35 H 0.069 0.931
36 H 0.106 0.894
37 H 0.087 0.913
38 H 0.136 0.864
39 H 0.057 0.943
40 H 0.123 0.877
41 H 0.096 0.904
42 H 0.056 0.944
43 H 0.066 0.934
44 H 0.086 0.914
45 H 0.060 0.940
46 H 0.090 0.910
47 H 0.077 0.923
48 H 0.032 0.968
49 H 0.044 0.956
50 H 0.361 0.639
51 H 0.240 0.760
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.364 -13.266 18.756 23.591
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.154 4.154
3 C -0.086 4.086
4 C -0.085 4.085
5 C -0.240 4.240
6 C -0.176 4.176
7 C 0.336 3.664
8 O -0.358 6.358
9 N -0.339 5.339
10 C -0.038 4.038
11 C -0.163 4.163
12 C -0.151 4.151
13 C -0.158 4.158
14 C 0.047 3.953
15 H 0.074 0.926
16 C 0.069 3.931
17 H 0.054 0.946
18 C -0.217 4.217
19 N -0.336 5.336
20 C -0.310 4.310
21 H 0.075 0.925
22 C -0.279 4.279
23 N -0.634 5.634
24 Si 0.790 3.210
25 H -0.217 1.217
26 H -0.224 1.224
27 H -0.207 1.207
28 N -0.101 5.101
29 N -0.083 5.083
30 H 0.308 0.692
31 H 0.079 0.921
32 H 0.087 0.913
33 H 0.073 0.927
34 H 0.070 0.930
35 H 0.088 0.912
36 H 0.124 0.876
37 H 0.106 0.894
38 H 0.154 0.846
39 H 0.075 0.925
40 H 0.140 0.860
41 H 0.114 0.886
42 H 0.074 0.926
43 H 0.085 0.915
44 H 0.105 0.895
45 H 0.079 0.921
46 H 0.108 0.892
47 H 0.096 0.904
48 H 0.051 0.949
49 H 0.063 0.937
50 H 0.192 0.808
51 H 0.049 0.951
Dipole moment (debyes) X Y Z Total
from point charges -4.774 -13.236 18.802 23.484
hybrid contribution -1.103 0.967 -1.460 2.069
sum -5.877 -12.269 17.343 22.042
Atomic orbital electron populations
1.21763 0.94054 1.02360 1.02553 1.21493 0.96889 0.94717 1.02329
1.20360 0.83726 0.99127 1.05339 1.21617 0.96113 1.04598 0.86212
1.21529 0.91406 1.11019 1.00094 1.22160 0.95490 1.09505 0.90456
1.17560 0.82653 0.79391 0.86839 1.91166 1.85500 1.45940 1.13185
1.47759 1.04182 1.73393 1.08598 1.22493 1.04384 0.98228 0.78657
1.21882 0.95628 0.97018 1.01753 1.21528 0.97172 1.02992 0.93457
1.21957 0.99715 0.96160 0.97973 1.21433 0.84412 0.98672 0.90807
0.92568 1.20572 0.91346 0.89754 0.91380 0.94645 1.22393 0.98335
1.01003 0.99980 1.42377 1.65272 1.13249 1.12710 1.19239 1.24452
0.97017 0.90330 0.92470 1.25238 1.04377 0.97345 1.00953 1.69811
1.52083 1.06161 1.35315 0.85383 0.78405 0.75844 0.81325 1.21710
1.22436 1.20722 1.73238 1.01940 1.21141 1.13755 1.43453 1.02392
1.52019 1.10477 0.69203 0.92134 0.91290 0.92703 0.93009 0.91205
0.87599 0.89449 0.84569 0.92475 0.85992 0.88560 0.92557 0.91488
0.89537 0.92123 0.89160 0.90437 0.94918 0.93729 0.80767 0.95081
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.68 9.91 71.99 0.71 -0.97 16
2 C -0.12 -1.67 5.92 30.60 0.18 -1.49 16
3 C -0.05 -0.75 5.77 29.85 0.17 -0.58 16
4 C 0.04 1.03 6.48 41.40 0.27 1.30 16
5 C -0.21 -7.60 10.74 22.41 0.24 -7.35 16
6 C -0.02 -0.64 6.83 42.46 0.29 -0.35 16
7 C 0.55 24.56 7.28 86.74 0.63 25.19 16
8 O -0.49 -26.30 10.12 -3.93 -0.04 -26.34 16
9 N -0.60 -22.30 2.97 -798.56 -2.37 -24.68 16
10 C 0.08 2.38 6.12 86.36 0.53 2.91 16
11 C -0.12 -2.61 6.08 30.67 0.19 -2.43 16
12 C -0.11 -2.30 5.88 30.62 0.18 -2.12 16
13 C -0.12 -3.14 4.60 30.67 0.14 -3.00 16
14 C 0.15 5.45 2.55 44.98 0.11 5.57 16
15 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16
16 C 0.18 7.96 1.81 44.99 0.08 8.05 16
17 H 0.04 1.79 6.38 -2.39 -0.02 1.78 16
18 C -0.16 -6.13 8.73 71.98 0.63 -5.50 16
19 N -0.70 -39.20 3.04 -322.94 -0.98 -40.18 16
20 C -0.18 -10.97 8.36 84.04 0.70 -10.27 16
21 H 0.06 3.52 7.80 -2.91 -0.02 3.50 16
22 C -0.09 -5.67 5.50 84.86 0.47 -5.20 16
23 N -0.98 -65.67 13.06 21.65 0.28 -65.38 16
24 Si 0.96 51.44 29.55 68.60 2.03 53.46 16
25 H -0.29 -15.32 7.11 99.48 0.71 -14.61 16
26 H -0.30 -15.93 7.11 99.48 0.71 -15.22 16
27 H -0.28 -14.38 7.11 99.48 0.71 -13.67 16
28 N -0.26 -7.90 8.70 -48.18 -0.42 -8.32 16
29 N -0.37 -8.02 6.83 -47.93 -0.33 -8.34 16
30 H 0.46 5.51 8.96 -220.00 -1.97 3.53 16
31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16
32 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16
33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16
34 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16
35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16
36 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16
37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16
38 H 0.14 5.37 8.06 -2.91 -0.02 5.34 16
39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16
40 H 0.12 3.42 4.15 -28.27 -0.12 3.30 16
41 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16
42 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16
43 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16
44 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16
45 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16
46 H 0.09 2.10 6.70 -2.38 -0.02 2.09 16
47 H 0.08 2.37 6.46 -2.39 -0.02 2.35 16
48 H 0.03 1.39 7.84 -2.39 -0.02 1.37 16
49 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16
50 H 0.36 22.18 7.57 -92.71 -0.70 21.48 16
51 H 0.24 15.77 8.31 -92.71 -0.77 15.00 16
Total: -1.00 -83.11 392.53 1.85 -81.26
By element:
Atomic # 1 Polarization: 36.61 SS G_CDS: -1.84 Total: 34.76 kcal
Atomic # 6 Polarization: -1.78 SS G_CDS: 5.53 Total: 3.75 kcal
Atomic # 7 Polarization: -143.08 SS G_CDS: -3.82 Total: -146.90 kcal
Atomic # 8 Polarization: -26.30 SS G_CDS: -0.04 Total: -26.34 kcal
Atomic # 14 Polarization: 51.44 SS G_CDS: 2.03 Total: 53.46 kcal
Total: -83.11 1.85 -81.26 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001731298199.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 144.482 kcal
(2) G-P(sol) polarization free energy of solvation -83.113 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.368 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.261 kcal
(6) G-S(sol) free energy of system = (1) + (5) 63.221 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.16 seconds