Wall clock time and date at job start Tue Mar 31 2020 19:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.53001 * 109.46847 * 2 1 4 4 C 1.50699 * 109.46654 * 179.97438 * 3 2 1 5 5 C 1.35364 * 126.38283 * 85.00715 * 4 3 2 6 6 C 1.41506 * 105.50483 * 179.97438 * 5 4 3 7 7 C 1.47704 * 126.51616 * 179.97438 * 6 5 4 8 8 O 1.21567 * 120.00685 * 6.89766 * 7 6 5 9 9 N 1.34788 * 119.99791 * 186.89474 * 7 6 5 10 10 C 1.46927 * 120.62804 * 6.83344 * 9 7 6 11 11 C 1.53190 * 108.77435 * 126.36562 * 10 9 7 12 12 C 1.53043 * 109.31291 * 54.63734 * 11 10 9 13 13 C 1.53038 * 109.53464 * 298.63211 * 12 11 10 14 14 C 1.46924 * 120.63247 * 186.80685 * 9 7 6 15 15 H 1.08995 * 109.58536 * 113.70493 * 14 9 7 16 16 C 1.53008 * 109.58521 * 353.41867 * 14 9 7 17 17 H 1.08996 * 109.47292 * 308.08580 * 16 14 9 18 18 C 1.52996 * 109.46769 * 188.08397 * 16 14 9 19 19 N 1.46502 * 109.46788 * 68.08539 * 16 14 9 20 20 C 1.36931 * 119.99548 * 189.01886 * 19 16 14 21 21 H 1.08001 * 120.00188 * 0.02562 * 20 19 16 22 22 C 1.38816 * 119.99869 * 179.72361 * 20 19 16 23 23 N 1.31614 * 119.99978 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00099 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46922 * 60.00461 * 24 22 20 26 26 H 1.48503 * 109.46991 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47113 * 300.00523 * 24 22 20 28 28 N 1.31809 * 106.95792 * 0.23841 * 6 5 4 29 29 N 1.28461 * 110.07701 * 359.59329 * 28 6 5 30 30 H 0.97000 * 124.88307 * 180.19883 * 29 28 6 31 31 H 1.09002 * 109.46941 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46623 * 299.99795 * 1 2 3 33 33 H 1.09001 * 109.46741 * 60.00013 * 1 2 3 34 34 H 1.09004 * 109.46623 * 240.00205 * 2 1 3 35 35 H 1.09001 * 109.46741 * 119.99987 * 2 1 3 36 36 H 1.09003 * 109.46799 * 60.00108 * 3 2 1 37 37 H 1.08997 * 109.47179 * 299.99982 * 3 2 1 38 38 H 1.07998 * 127.24834 * 359.94968 * 5 4 3 39 39 H 1.08997 * 109.58183 * 246.15580 * 10 9 7 40 40 H 1.08999 * 109.58662 * 6.43644 * 10 9 7 41 41 H 1.09007 * 109.49346 * 174.58252 * 11 10 9 42 42 H 1.08996 * 109.50195 * 294.68083 * 11 10 9 43 43 H 1.09003 * 109.46268 * 58.64794 * 12 11 10 44 44 H 1.08997 * 109.45877 * 178.61518 * 12 11 10 45 45 H 1.09001 * 109.50128 * 301.41261 * 13 12 11 46 46 H 1.09007 * 109.49919 * 181.31997 * 13 12 11 47 47 H 1.08997 * 109.47396 * 60.00416 * 18 16 14 48 48 H 1.09003 * 109.46775 * 180.02562 * 18 16 14 49 49 H 1.09001 * 109.47741 * 299.99944 * 18 16 14 50 50 H 0.96993 * 120.00268 * 9.02083 * 19 16 14 51 51 H 0.96998 * 120.00236 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3504 1.3475 -1.0847 6 6 5.6724 1.3920 -0.5818 7 6 6.9170 1.3223 -1.3741 8 8 6.8664 1.3421 -2.5886 9 7 8.1089 1.2367 -0.7506 10 6 8.1806 1.0616 0.7065 11 6 9.0530 -0.1595 1.0139 12 6 10.4136 0.0062 0.3331 13 6 10.2203 0.0924 -1.1826 14 6 9.3611 1.3163 -1.5150 15 1 9.8971 2.2260 -1.2445 16 6 9.0477 1.3316 -3.0126 17 1 8.3947 0.4934 -3.2557 18 6 10.3495 1.2111 -3.8072 19 7 8.3787 2.5881 -3.3586 20 6 7.8356 2.7540 -4.6047 21 1 7.9001 1.9584 -5.3321 22 6 7.1967 3.9425 -4.9307 23 7 7.1134 4.9100 -4.0424 24 14 6.4565 4.1691 -6.6308 25 1 5.4211 3.1300 -6.8624 26 1 5.8371 5.5154 -6.7256 27 1 7.5232 4.0421 -7.6561 28 7 5.5817 1.5017 0.7286 29 7 4.3477 1.5379 1.0838 30 1 4.0360 1.6186 1.9988 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 4.0465 1.2564 -2.1170 39 1 8.6215 1.9493 1.1599 40 1 7.1782 0.9069 1.1057 41 1 9.1934 -0.2442 2.0916 42 1 8.5654 -1.0590 0.6383 43 1 10.8900 0.9190 0.6908 44 1 11.0451 -0.8499 0.5705 45 1 9.7216 -0.8095 -1.5377 46 1 11.1915 0.1869 -1.6685 47 1 10.8472 0.2762 -3.5497 48 1 10.1263 1.2225 -4.8741 49 1 11.0025 2.0493 -3.5642 50 1 8.3205 3.3026 -2.7052 51 1 6.6673 5.7406 -4.2703 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731298199.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:52 Heat of formation + Delta-G solvation = 63.220515 kcal Electronic energy + Delta-G solvation = -30794.507375 eV Core-core repulsion = 26924.346844 eV Total energy + Delta-G solvation = -3870.160530 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.65790 -41.25309 -38.10325 -36.92243 -36.19916 -34.25072 -33.68801 -32.57421 -31.84852 -31.42075 -29.36655 -27.43715 -26.84963 -25.93040 -24.42316 -23.87345 -22.86541 -21.89000 -21.63027 -21.28606 -19.93628 -18.75757 -18.72939 -17.36560 -16.82253 -16.73579 -16.61061 -15.94850 -15.70498 -15.52958 -15.44272 -14.96011 -14.80678 -14.73204 -14.53260 -14.38128 -14.22759 -13.95840 -13.74483 -13.50559 -13.42302 -13.04295 -12.98895 -12.74768 -12.59494 -12.44509 -12.40927 -12.20809 -12.13248 -12.10081 -11.74257 -11.67748 -11.57367 -11.52772 -11.22243 -10.89058 -10.81614 -10.26671 -9.93916 -9.85867 -9.36561 -8.52814 -7.75232 -4.93336 0.68559 1.18876 1.43790 1.48628 1.53469 1.92292 2.31619 2.65074 2.68270 3.43268 3.58270 3.69049 3.79998 3.87777 4.00161 4.08679 4.16750 4.18993 4.27603 4.33859 4.41506 4.45632 4.51952 4.59613 4.66294 4.74247 4.78488 4.83107 4.91235 4.93094 4.96907 4.98632 5.01948 5.10575 5.11778 5.16284 5.21011 5.23033 5.28512 5.33780 5.40806 5.44960 5.46708 5.52317 5.61627 5.65231 5.99165 6.21861 6.45453 6.68966 6.97509 7.50368 7.61111 8.29540 8.52935 9.49983 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007881 B = 0.005142 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3551.865243 B = 5444.271395 C = 8331.983817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.047 4.047 4 C 0.042 3.958 5 C -0.212 4.212 6 C -0.017 4.017 7 C 0.551 3.449 8 O -0.488 6.488 9 N -0.604 5.604 10 C 0.085 3.915 11 C -0.125 4.125 12 C -0.114 4.114 13 C -0.119 4.119 14 C 0.150 3.850 15 H 0.056 0.944 16 C 0.177 3.823 17 H 0.036 0.964 18 C -0.157 4.157 19 N -0.698 5.698 20 C -0.177 4.177 21 H 0.057 0.943 22 C -0.089 4.089 23 N -0.979 5.979 24 Si 0.959 3.041 25 H -0.290 1.290 26 H -0.298 1.298 27 H -0.281 1.281 28 N -0.264 5.264 29 N -0.368 5.368 30 H 0.460 0.540 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.136 0.864 39 H 0.057 0.943 40 H 0.123 0.877 41 H 0.096 0.904 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.060 0.940 46 H 0.090 0.910 47 H 0.077 0.923 48 H 0.032 0.968 49 H 0.044 0.956 50 H 0.361 0.639 51 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.364 -13.266 18.756 23.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.086 4.086 4 C -0.085 4.085 5 C -0.240 4.240 6 C -0.176 4.176 7 C 0.336 3.664 8 O -0.358 6.358 9 N -0.339 5.339 10 C -0.038 4.038 11 C -0.163 4.163 12 C -0.151 4.151 13 C -0.158 4.158 14 C 0.047 3.953 15 H 0.074 0.926 16 C 0.069 3.931 17 H 0.054 0.946 18 C -0.217 4.217 19 N -0.336 5.336 20 C -0.310 4.310 21 H 0.075 0.925 22 C -0.279 4.279 23 N -0.634 5.634 24 Si 0.790 3.210 25 H -0.217 1.217 26 H -0.224 1.224 27 H -0.207 1.207 28 N -0.101 5.101 29 N -0.083 5.083 30 H 0.308 0.692 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.124 0.876 37 H 0.106 0.894 38 H 0.154 0.846 39 H 0.075 0.925 40 H 0.140 0.860 41 H 0.114 0.886 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.079 0.921 46 H 0.108 0.892 47 H 0.096 0.904 48 H 0.051 0.949 49 H 0.063 0.937 50 H 0.192 0.808 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.774 -13.236 18.802 23.484 hybrid contribution -1.103 0.967 -1.460 2.069 sum -5.877 -12.269 17.343 22.042 Atomic orbital electron populations 1.21763 0.94054 1.02360 1.02553 1.21493 0.96889 0.94717 1.02329 1.20360 0.83726 0.99127 1.05339 1.21617 0.96113 1.04598 0.86212 1.21529 0.91406 1.11019 1.00094 1.22160 0.95490 1.09505 0.90456 1.17560 0.82653 0.79391 0.86839 1.91166 1.85500 1.45940 1.13185 1.47759 1.04182 1.73393 1.08598 1.22493 1.04384 0.98228 0.78657 1.21882 0.95628 0.97018 1.01753 1.21528 0.97172 1.02992 0.93457 1.21957 0.99715 0.96160 0.97973 1.21433 0.84412 0.98672 0.90807 0.92568 1.20572 0.91346 0.89754 0.91380 0.94645 1.22393 0.98335 1.01003 0.99980 1.42377 1.65272 1.13249 1.12710 1.19239 1.24452 0.97017 0.90330 0.92470 1.25238 1.04377 0.97345 1.00953 1.69811 1.52083 1.06161 1.35315 0.85383 0.78405 0.75844 0.81325 1.21710 1.22436 1.20722 1.73238 1.01940 1.21141 1.13755 1.43453 1.02392 1.52019 1.10477 0.69203 0.92134 0.91290 0.92703 0.93009 0.91205 0.87599 0.89449 0.84569 0.92475 0.85992 0.88560 0.92557 0.91488 0.89537 0.92123 0.89160 0.90437 0.94918 0.93729 0.80767 0.95081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 71.99 0.71 -0.97 16 2 C -0.12 -1.67 5.92 30.60 0.18 -1.49 16 3 C -0.05 -0.75 5.77 29.85 0.17 -0.58 16 4 C 0.04 1.03 6.48 41.40 0.27 1.30 16 5 C -0.21 -7.60 10.74 22.41 0.24 -7.35 16 6 C -0.02 -0.64 6.83 42.46 0.29 -0.35 16 7 C 0.55 24.56 7.28 86.74 0.63 25.19 16 8 O -0.49 -26.30 10.12 -3.93 -0.04 -26.34 16 9 N -0.60 -22.30 2.97 -798.56 -2.37 -24.68 16 10 C 0.08 2.38 6.12 86.36 0.53 2.91 16 11 C -0.12 -2.61 6.08 30.67 0.19 -2.43 16 12 C -0.11 -2.30 5.88 30.62 0.18 -2.12 16 13 C -0.12 -3.14 4.60 30.67 0.14 -3.00 16 14 C 0.15 5.45 2.55 44.98 0.11 5.57 16 15 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 16 C 0.18 7.96 1.81 44.99 0.08 8.05 16 17 H 0.04 1.79 6.38 -2.39 -0.02 1.78 16 18 C -0.16 -6.13 8.73 71.98 0.63 -5.50 16 19 N -0.70 -39.20 3.04 -322.94 -0.98 -40.18 16 20 C -0.18 -10.97 8.36 84.04 0.70 -10.27 16 21 H 0.06 3.52 7.80 -2.91 -0.02 3.50 16 22 C -0.09 -5.67 5.50 84.86 0.47 -5.20 16 23 N -0.98 -65.67 13.06 21.65 0.28 -65.38 16 24 Si 0.96 51.44 29.55 68.60 2.03 53.46 16 25 H -0.29 -15.32 7.11 99.48 0.71 -14.61 16 26 H -0.30 -15.93 7.11 99.48 0.71 -15.22 16 27 H -0.28 -14.38 7.11 99.48 0.71 -13.67 16 28 N -0.26 -7.90 8.70 -48.18 -0.42 -8.32 16 29 N -0.37 -8.02 6.83 -47.93 -0.33 -8.34 16 30 H 0.46 5.51 8.96 -220.00 -1.97 3.53 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.14 5.37 8.06 -2.91 -0.02 5.34 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.12 3.42 4.15 -28.27 -0.12 3.30 16 41 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.09 2.10 6.70 -2.38 -0.02 2.09 16 47 H 0.08 2.37 6.46 -2.39 -0.02 2.35 16 48 H 0.03 1.39 7.84 -2.39 -0.02 1.37 16 49 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.36 22.18 7.57 -92.71 -0.70 21.48 16 51 H 0.24 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -83.11 392.53 1.85 -81.26 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: -1.84 Total: 34.76 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 5.53 Total: 3.75 kcal Atomic # 7 Polarization: -143.08 SS G_CDS: -3.82 Total: -146.90 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.04 Total: -26.34 kcal Atomic # 14 Polarization: 51.44 SS G_CDS: 2.03 Total: 53.46 kcal Total: -83.11 1.85 -81.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731298199.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.482 kcal (2) G-P(sol) polarization free energy of solvation -83.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds