Wall clock time and date at job start Tue Mar 31 2020 18:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47283 * 2 1 4 4 N 1.30499 * 125.65057 * 270.17926 * 3 2 1 5 5 C 1.34133 * 109.25219 * 180.29138 * 4 3 2 6 6 C 1.34670 * 108.02431 * 359.72248 * 5 4 3 7 7 N 1.35046 * 125.64502 * 90.00006 * 3 2 1 8 8 C 1.46496 * 126.40209 * 359.97438 * 7 3 2 9 9 H 1.09007 * 109.46656 * 359.71584 * 8 7 3 10 10 C 1.52990 * 109.47275 * 239.71380 * 8 7 3 11 11 C 1.52999 * 109.47379 * 119.70975 * 8 7 3 12 12 C 1.50699 * 109.47416 * 185.00410 * 11 8 7 13 13 O 1.21281 * 119.99674 * 359.97438 * 12 11 8 14 14 N 1.34776 * 119.99901 * 180.02562 * 12 11 8 15 15 C 1.47019 * 125.65134 * 359.95336 * 14 12 11 16 16 C 1.54318 * 107.27266 * 178.97695 * 15 14 12 17 17 C 1.55160 * 102.94392 * 337.80790 * 16 15 14 18 18 H 1.08993 * 111.03600 * 277.41271 * 17 16 15 19 19 C 1.53001 * 111.00386 * 153.57569 * 17 16 15 20 20 N 1.46490 * 109.47264 * 72.80359 * 19 17 16 21 21 C 1.36935 * 120.00121 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00139 * 0.02562 * 21 20 19 23 23 C 1.38816 * 120.00401 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99569 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00172 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47055 * 180.02562 * 25 23 21 27 27 H 1.48505 * 109.46653 * 299.99639 * 25 23 21 28 28 H 1.48495 * 109.47483 * 60.00002 * 25 23 21 29 29 C 1.47429 * 125.64797 * 179.97438 * 14 12 11 30 30 H 1.08998 * 109.47235 * 59.99060 * 1 2 3 31 31 H 1.08998 * 109.47142 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46901 * 299.99717 * 1 2 3 33 33 H 1.09001 * 109.47269 * 240.00653 * 2 1 3 34 34 H 1.08997 * 109.47577 * 120.00522 * 2 1 3 35 35 H 1.07995 * 125.99045 * 179.72846 * 5 4 3 36 36 H 1.07991 * 126.59368 * 179.97438 * 6 5 4 37 37 H 1.08999 * 109.47614 * 59.99669 * 10 8 7 38 38 H 1.09004 * 109.47524 * 179.97438 * 10 8 7 39 39 H 1.08998 * 109.47536 * 299.99848 * 10 8 7 40 40 H 1.09005 * 109.47075 * 64.99867 * 11 8 7 41 41 H 1.09001 * 109.47112 * 305.00712 * 11 8 7 42 42 H 1.09001 * 109.88178 * 298.39969 * 15 14 12 43 43 H 1.09000 * 109.87866 * 59.40803 * 15 14 12 44 44 H 1.09007 * 110.72296 * 219.44599 * 16 15 14 45 45 H 1.09003 * 110.72257 * 96.16925 * 16 15 14 46 46 H 1.09003 * 109.46836 * 312.80067 * 19 17 16 47 47 H 1.08999 * 109.47071 * 192.81106 * 19 17 16 48 48 H 0.97000 * 120.00577 * 0.02562 * 20 19 17 49 49 H 0.97001 * 119.99885 * 359.97438 * 24 23 21 50 50 H 1.08999 * 110.36251 * 85.24934 * 29 14 12 51 51 H 1.08999 * 110.36400 * 322.93496 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2828 2.1390 -1.0604 5 6 2.7189 3.3496 -0.6818 6 6 2.7337 3.3850 0.6644 7 7 2.2947 2.1628 1.0974 8 6 2.1437 1.7373 2.4911 9 1 1.7753 0.7118 2.5199 10 6 1.1479 2.6571 3.2001 11 6 3.4990 1.8122 3.1970 12 6 3.3697 1.2591 4.5929 13 8 2.2988 0.8462 4.9847 14 7 4.4439 1.2244 5.4061 15 6 5.7952 1.6898 5.0613 16 6 6.6841 1.4776 6.3047 17 6 5.6542 1.4294 7.4642 18 1 5.3774 2.4341 7.7836 19 6 6.1906 0.6114 8.6406 20 7 7.2380 1.3717 9.3267 21 6 7.8684 0.8372 10.4185 22 1 7.5937 -0.1451 10.7735 23 6 8.8607 1.5578 11.0691 24 7 9.1952 2.7551 10.6367 25 14 9.7211 0.8282 12.5580 26 1 10.7319 1.7902 13.0662 27 1 8.7218 0.5530 13.6215 28 1 10.3930 -0.4380 12.1704 29 6 4.4586 0.7129 6.7888 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.0076 4.1550 -1.3409 36 1 3.0345 4.2173 1.2833 37 1 0.1823 2.6038 2.6973 38 1 1.0351 2.3402 4.2370 39 1 1.5162 3.6826 3.1713 40 1 3.8261 2.8508 3.2464 41 1 4.2313 1.2269 2.6407 42 1 6.1844 1.1105 4.2240 43 1 5.7672 2.7474 4.7989 44 1 7.3719 2.3132 6.4343 45 1 7.2287 0.5360 6.2334 46 1 6.6050 -0.3268 8.2717 47 1 5.3789 0.4011 9.3370 48 1 7.4846 2.2541 9.0082 49 1 8.7486 3.1338 9.8633 50 1 4.6120 -0.3662 6.7923 51 1 3.5282 0.9663 7.2968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731657770.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:07 Heat of formation + Delta-G solvation = 27.720686 kcal Electronic energy + Delta-G solvation = -28689.106551 eV Core-core repulsion = 24817.406633 eV Total energy + Delta-G solvation = -3871.699918 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.50145 -40.41357 -38.16487 -35.92242 -35.04500 -34.15201 -32.63158 -31.19724 -30.31043 -29.33574 -28.91798 -28.21293 -25.21883 -24.23939 -23.60175 -22.92864 -22.63097 -21.30893 -20.27999 -19.71247 -19.22935 -17.92760 -17.34881 -16.77619 -16.68810 -15.94020 -15.50009 -15.36170 -15.01853 -14.61008 -14.42641 -14.16565 -13.92033 -13.79344 -13.78558 -13.63465 -13.50390 -13.36015 -12.93528 -12.86416 -12.66949 -12.62774 -12.14840 -11.99943 -11.93531 -11.91133 -11.65920 -11.42911 -11.12388 -10.89879 -10.74901 -10.61091 -10.50746 -10.33444 -10.07484 -10.02220 -9.87744 -9.24312 -8.95291 -8.86869 -8.63270 -7.08345 -6.16968 -3.17260 1.74754 2.24701 2.29661 2.82306 2.89921 3.48130 3.51329 3.68845 3.98383 4.04811 4.13612 4.26268 4.44266 4.52221 4.56188 4.62454 4.72958 4.77180 4.83637 4.88625 4.95752 5.01428 5.04428 5.10052 5.23769 5.24786 5.28240 5.36744 5.42292 5.43614 5.49581 5.54857 5.64577 5.68776 5.77954 5.80448 5.81111 5.82021 5.84777 5.97637 6.06794 6.13523 6.21263 6.50391 6.54593 6.64915 6.89934 7.24280 7.74270 7.81803 7.85397 8.69210 9.15291 10.01694 10.15985 11.31462 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.028445 B = 0.001862 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.106135 B =15031.906491 C =15443.471834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C 0.209 3.791 4 N -0.492 5.492 5 C -0.030 4.030 6 C -0.056 4.056 7 N -0.449 5.449 8 C 0.147 3.853 9 H 0.111 0.889 10 C -0.165 4.165 11 C -0.147 4.147 12 C 0.534 3.466 13 O -0.541 6.541 14 N -0.613 5.613 15 C 0.097 3.903 16 C -0.121 4.121 17 C -0.107 4.107 18 H 0.084 0.916 19 C 0.170 3.830 20 N -0.742 5.742 21 C -0.333 4.333 22 H 0.065 0.935 23 C -0.045 4.045 24 N -0.943 5.943 25 Si 1.080 2.920 26 H -0.285 1.285 27 H -0.295 1.295 28 H -0.295 1.295 29 C 0.113 3.887 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.062 0.938 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.024 0.976 47 H 0.023 0.977 48 H 0.367 0.633 49 H 0.254 0.746 50 H 0.072 0.928 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.885 -1.506 -21.469 26.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 C -0.053 4.053 4 N -0.211 5.211 5 C -0.178 4.178 6 C -0.189 4.189 7 N -0.132 5.132 8 C 0.044 3.956 9 H 0.129 0.871 10 C -0.223 4.223 11 C -0.188 4.188 12 C 0.321 3.679 13 O -0.419 6.419 14 N -0.346 5.346 15 C -0.026 4.026 16 C -0.159 4.159 17 C -0.127 4.127 18 H 0.102 0.898 19 C 0.042 3.958 20 N -0.388 5.388 21 C -0.464 4.464 22 H 0.083 0.917 23 C -0.242 4.242 24 N -0.588 5.588 25 Si 0.911 3.089 26 H -0.210 1.210 27 H -0.222 1.222 28 H -0.222 1.222 29 C -0.009 4.009 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.185 0.815 36 H 0.188 0.812 37 H 0.081 0.919 38 H 0.116 0.884 39 H 0.078 0.922 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.104 0.896 45 H 0.099 0.901 46 H 0.042 0.958 47 H 0.041 0.959 48 H 0.200 0.800 49 H 0.065 0.935 50 H 0.090 0.910 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.518 -1.968 -20.737 25.390 hybrid contribution -0.763 0.494 -0.445 1.012 sum -15.281 -1.474 -21.182 26.160 Atomic orbital electron populations 1.21743 0.93846 1.02385 1.02530 1.19989 0.96571 0.87446 1.04004 1.23287 1.04063 0.96602 0.81341 1.70246 1.18281 1.04312 1.28230 1.22269 1.06393 0.96330 0.92759 1.22621 1.09319 0.90184 0.96763 1.45608 1.48734 1.11829 1.07006 1.21162 0.95329 1.01586 0.77554 0.87082 1.22274 0.98244 0.98770 1.02984 1.21973 0.98660 1.04221 0.93950 1.19816 0.82908 0.78889 0.86244 1.90699 1.26397 1.48553 1.76241 1.48526 1.09465 1.61687 1.14936 1.22183 0.81894 0.99454 0.99026 1.22666 0.97178 1.03913 0.92180 1.22595 0.93861 1.00611 0.95599 0.89761 1.20479 0.91285 0.93399 0.90622 1.42305 1.43031 1.18887 1.34546 1.20023 1.17759 1.02181 1.06411 0.91720 1.25799 0.97818 0.96573 1.04055 1.70902 1.44663 1.16344 1.26938 0.83236 0.76050 0.74670 0.74953 1.20998 1.22231 1.22226 1.22276 0.99592 0.98552 0.80479 0.91870 0.91513 0.92761 0.88675 0.90430 0.81451 0.81186 0.91857 0.88364 0.92176 0.88026 0.88165 0.91377 0.91328 0.89580 0.90084 0.95833 0.95897 0.80002 0.93490 0.90967 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.61 16 2 C -0.04 -0.31 6.08 -27.88 -0.17 -0.48 16 3 C 0.21 2.11 7.16 -155.41 -1.11 0.99 16 4 N -0.49 -5.84 11.25 -10.81 -0.12 -5.96 16 5 C -0.03 -0.29 11.87 -17.81 -0.21 -0.51 16 6 C -0.06 -0.48 10.70 -16.56 -0.18 -0.66 16 7 N -0.45 -3.99 2.61 -106.83 -0.28 -4.27 16 8 C 0.15 1.20 2.64 -67.94 -0.18 1.02 16 9 H 0.11 0.94 6.49 -51.92 -0.34 0.61 16 10 C -0.17 -1.36 8.99 37.15 0.33 -1.03 16 11 C -0.15 -1.16 4.37 -27.88 -0.12 -1.29 16 12 C 0.53 5.87 7.57 -10.99 -0.08 5.78 16 13 O -0.54 -7.42 14.22 5.56 0.08 -7.34 16 14 N -0.61 -6.88 3.33 -170.54 -0.57 -7.45 16 15 C 0.10 0.94 6.49 -3.07 -0.02 0.92 16 16 C -0.12 -1.50 6.37 -24.90 -0.16 -1.66 16 17 C -0.11 -1.53 3.05 -88.48 -0.27 -1.80 16 18 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 19 C 0.17 3.19 5.71 -4.05 -0.02 3.17 16 20 N -0.74 -17.83 5.55 -59.91 -0.33 -18.16 16 21 C -0.33 -9.18 9.99 -15.06 -0.15 -9.33 16 22 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 23 C -0.04 -1.28 5.50 -17.43 -0.10 -1.38 16 24 N -0.94 -28.49 13.70 55.49 0.76 -27.73 16 25 Si 1.08 25.42 29.92 -169.99 -5.09 20.34 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 29 C 0.11 1.45 6.38 -2.54 -0.02 1.43 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.50 7.08 -51.93 -0.37 0.13 16 35 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.17 1.03 8.06 -52.49 -0.42 0.60 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.98 5.95 -51.93 -0.31 0.67 16 39 H 0.06 0.45 7.95 -51.93 -0.41 0.04 16 40 H 0.10 0.68 8.09 -51.93 -0.42 0.26 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.08 1.05 7.91 -51.93 -0.41 0.64 16 46 H 0.02 0.45 7.97 -51.93 -0.41 0.04 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.37 8.92 6.50 -40.82 -0.27 8.65 16 49 H 0.25 7.49 6.77 -40.82 -0.28 7.21 16 50 H 0.07 0.92 8.04 -51.93 -0.42 0.50 16 51 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 LS Contribution 408.93 15.07 6.16 6.16 Total: -1.00 -33.86 408.93 -10.22 -44.08 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -8.75 Total: 5.74 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -2.09 Total: -5.42 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: -0.54 Total: -63.56 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: 0.08 Total: -7.34 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.09 Total: 20.34 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.86 -10.22 -44.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731657770.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.801 kcal (2) G-P(sol) polarization free energy of solvation -33.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds