Wall clock time and date at job start Tue Mar 31 2020 18:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47283 * 2 1 4 4 N 1.30499 * 125.65057 * 270.17926 * 3 2 1 5 5 C 1.34133 * 109.25219 * 180.29138 * 4 3 2 6 6 C 1.34670 * 108.02431 * 359.72248 * 5 4 3 7 7 N 1.35046 * 125.64502 * 90.00006 * 3 2 1 8 8 C 1.46496 * 126.40209 * 359.97438 * 7 3 2 9 9 H 1.09007 * 109.46656 * 359.71584 * 8 7 3 10 10 C 1.52990 * 109.47275 * 239.71380 * 8 7 3 11 11 C 1.52999 * 109.47379 * 119.70975 * 8 7 3 12 12 C 1.50699 * 109.47416 * 185.00410 * 11 8 7 13 13 O 1.21281 * 119.99674 * 359.97438 * 12 11 8 14 14 N 1.34776 * 119.99901 * 180.02562 * 12 11 8 15 15 C 1.47019 * 125.65134 * 359.95336 * 14 12 11 16 16 C 1.54318 * 107.27266 * 178.97695 * 15 14 12 17 17 C 1.55160 * 102.94392 * 337.80790 * 16 15 14 18 18 H 1.08993 * 111.03600 * 277.41271 * 17 16 15 19 19 C 1.53001 * 111.00386 * 153.57569 * 17 16 15 20 20 N 1.46490 * 109.47264 * 72.80359 * 19 17 16 21 21 C 1.36935 * 120.00121 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00139 * 0.02562 * 21 20 19 23 23 C 1.38816 * 120.00401 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99569 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00172 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47055 * 180.02562 * 25 23 21 27 27 H 1.48505 * 109.46653 * 299.99639 * 25 23 21 28 28 H 1.48495 * 109.47483 * 60.00002 * 25 23 21 29 29 C 1.47429 * 125.64797 * 179.97438 * 14 12 11 30 30 H 1.08998 * 109.47235 * 59.99060 * 1 2 3 31 31 H 1.08998 * 109.47142 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46901 * 299.99717 * 1 2 3 33 33 H 1.09001 * 109.47269 * 240.00653 * 2 1 3 34 34 H 1.08997 * 109.47577 * 120.00522 * 2 1 3 35 35 H 1.07995 * 125.99045 * 179.72846 * 5 4 3 36 36 H 1.07991 * 126.59368 * 179.97438 * 6 5 4 37 37 H 1.08999 * 109.47614 * 59.99669 * 10 8 7 38 38 H 1.09004 * 109.47524 * 179.97438 * 10 8 7 39 39 H 1.08998 * 109.47536 * 299.99848 * 10 8 7 40 40 H 1.09005 * 109.47075 * 64.99867 * 11 8 7 41 41 H 1.09001 * 109.47112 * 305.00712 * 11 8 7 42 42 H 1.09001 * 109.88178 * 298.39969 * 15 14 12 43 43 H 1.09000 * 109.87866 * 59.40803 * 15 14 12 44 44 H 1.09007 * 110.72296 * 219.44599 * 16 15 14 45 45 H 1.09003 * 110.72257 * 96.16925 * 16 15 14 46 46 H 1.09003 * 109.46836 * 312.80067 * 19 17 16 47 47 H 1.08999 * 109.47071 * 192.81106 * 19 17 16 48 48 H 0.97000 * 120.00577 * 0.02562 * 20 19 17 49 49 H 0.97001 * 119.99885 * 359.97438 * 24 23 21 50 50 H 1.08999 * 110.36251 * 85.24934 * 29 14 12 51 51 H 1.08999 * 110.36400 * 322.93496 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2828 2.1390 -1.0604 5 6 2.7189 3.3496 -0.6818 6 6 2.7337 3.3850 0.6644 7 7 2.2947 2.1628 1.0974 8 6 2.1437 1.7373 2.4911 9 1 1.7753 0.7118 2.5199 10 6 1.1479 2.6571 3.2001 11 6 3.4990 1.8122 3.1970 12 6 3.3697 1.2591 4.5929 13 8 2.2988 0.8462 4.9847 14 7 4.4439 1.2244 5.4061 15 6 5.7952 1.6898 5.0613 16 6 6.6841 1.4776 6.3047 17 6 5.6542 1.4294 7.4642 18 1 5.3774 2.4341 7.7836 19 6 6.1906 0.6114 8.6406 20 7 7.2380 1.3717 9.3267 21 6 7.8684 0.8372 10.4185 22 1 7.5937 -0.1451 10.7735 23 6 8.8607 1.5578 11.0691 24 7 9.1952 2.7551 10.6367 25 14 9.7211 0.8282 12.5580 26 1 10.7319 1.7902 13.0662 27 1 8.7218 0.5530 13.6215 28 1 10.3930 -0.4380 12.1704 29 6 4.4586 0.7129 6.7888 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.0076 4.1550 -1.3409 36 1 3.0345 4.2173 1.2833 37 1 0.1823 2.6038 2.6973 38 1 1.0351 2.3402 4.2370 39 1 1.5162 3.6826 3.1713 40 1 3.8261 2.8508 3.2464 41 1 4.2313 1.2269 2.6407 42 1 6.1844 1.1105 4.2240 43 1 5.7672 2.7474 4.7989 44 1 7.3719 2.3132 6.4343 45 1 7.2287 0.5360 6.2334 46 1 6.6050 -0.3268 8.2717 47 1 5.3789 0.4011 9.3370 48 1 7.4846 2.2541 9.0082 49 1 8.7486 3.1338 9.8633 50 1 4.6120 -0.3662 6.7923 51 1 3.5282 0.9663 7.2968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731657770.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:06 Heat of formation + Delta-G solvation = 8.188462 kcal Electronic energy + Delta-G solvation = -28689.953532 eV Core-core repulsion = 24817.406633 eV Total energy + Delta-G solvation = -3872.546899 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.18111 -41.31876 -39.19382 -36.86849 -36.56495 -34.72436 -34.12809 -32.15950 -31.59714 -30.35834 -29.55794 -29.12097 -26.72412 -25.00785 -24.70749 -24.13998 -23.72347 -22.02340 -21.48617 -20.44041 -20.01613 -19.38350 -18.64812 -17.73520 -17.54940 -16.72674 -16.63766 -16.19248 -15.97173 -15.76513 -15.60117 -15.28103 -15.10405 -15.00426 -14.72599 -14.45820 -14.34322 -14.16030 -14.00863 -13.89747 -13.74314 -13.23080 -13.10864 -12.88651 -12.77475 -12.61359 -12.57804 -12.54455 -12.27454 -12.21365 -11.99456 -11.91214 -11.87014 -11.73359 -11.28173 -11.14526 -10.93184 -10.86603 -10.61278 -9.77335 -9.30160 -9.11986 -8.40294 -5.34488 1.07950 1.44039 1.53820 1.59420 1.68558 1.85124 2.02780 2.18270 2.70620 3.23364 3.34388 3.39183 3.47287 3.54017 3.57534 3.65035 3.78176 3.87305 3.99983 4.10070 4.20095 4.22560 4.28778 4.33638 4.35075 4.40398 4.46701 4.47821 4.55705 4.64536 4.66565 4.71001 4.73855 4.76428 4.83108 4.89759 4.96207 4.96796 5.06346 5.10017 5.12602 5.17868 5.26210 5.29810 5.40713 5.58033 5.85513 6.23440 6.38747 6.50204 6.96490 7.08821 7.16290 7.99256 8.09275 9.11929 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.028445 B = 0.001862 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.106135 B =15031.906491 C =15443.471834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C 0.197 3.803 4 N -0.528 5.528 5 C -0.053 4.053 6 C -0.050 4.050 7 N -0.447 5.447 8 C 0.151 3.849 9 H 0.107 0.893 10 C -0.159 4.159 11 C -0.136 4.136 12 C 0.533 3.467 13 O -0.571 6.571 14 N -0.614 5.614 15 C 0.104 3.896 16 C -0.119 4.119 17 C -0.098 4.098 18 H 0.076 0.924 19 C 0.169 3.831 20 N -0.753 5.753 21 C -0.336 4.336 22 H 0.065 0.935 23 C -0.103 4.103 24 N -0.973 5.973 25 Si 1.127 2.873 26 H -0.293 1.293 27 H -0.280 1.280 28 H -0.277 1.277 29 C 0.121 3.879 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.182 0.818 36 H 0.198 0.802 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.025 0.975 47 H 0.016 0.984 48 H 0.363 0.637 49 H 0.245 0.755 50 H 0.073 0.927 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.869 -1.785 -22.218 26.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 C -0.065 4.065 4 N -0.248 5.248 5 C -0.200 4.200 6 C -0.182 4.182 7 N -0.129 5.129 8 C 0.048 3.952 9 H 0.125 0.875 10 C -0.217 4.217 11 C -0.176 4.176 12 C 0.323 3.677 13 O -0.451 6.451 14 N -0.347 5.347 15 C -0.018 4.018 16 C -0.157 4.157 17 C -0.118 4.118 18 H 0.095 0.905 19 C 0.043 3.957 20 N -0.398 5.398 21 C -0.468 4.468 22 H 0.083 0.917 23 C -0.294 4.294 24 N -0.621 5.621 25 Si 0.951 3.049 26 H -0.219 1.219 27 H -0.206 1.206 28 H -0.203 1.203 29 C -0.002 4.002 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.199 0.801 36 H 0.215 0.785 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.140 0.860 41 H 0.132 0.868 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.043 0.957 47 H 0.034 0.966 48 H 0.195 0.805 49 H 0.056 0.944 50 H 0.091 0.909 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.530 -2.267 -21.522 26.067 hybrid contribution -0.838 0.555 -0.235 1.032 sum -15.369 -1.712 -21.757 26.692 Atomic orbital electron populations 1.21699 0.93402 1.03219 1.01657 1.20089 0.96903 0.86439 1.04643 1.23683 1.04037 0.97409 0.81387 1.70216 1.19532 1.05494 1.29514 1.22648 1.07099 0.96362 0.93912 1.23041 1.08036 0.90493 0.96649 1.45638 1.48482 1.11892 1.06920 1.21109 0.95549 1.01366 0.77180 0.87502 1.22189 0.98344 0.99326 1.01833 1.21923 0.98707 1.05362 0.91640 1.20305 0.82133 0.78201 0.87076 1.90698 1.27558 1.49848 1.77018 1.48558 1.10319 1.61707 1.14159 1.22233 0.80283 1.01239 0.98024 1.22609 0.97025 1.03380 0.92697 1.22360 0.95231 0.99433 0.94763 0.90510 1.20588 0.89744 0.93660 0.91753 1.42476 1.43931 1.19122 1.34255 1.20372 1.17368 1.02067 1.06973 0.91711 1.27172 0.99065 0.96530 1.06648 1.71001 1.45876 1.17667 1.27581 0.82636 0.75325 0.74442 0.72453 1.21874 1.20587 1.20322 1.22049 0.98227 0.98399 0.81557 0.93023 0.89839 0.93258 0.88483 0.89284 0.80135 0.78493 0.92095 0.90002 0.91093 0.86011 0.86846 0.88990 0.89169 0.90185 0.90733 0.95673 0.96557 0.80469 0.94417 0.90882 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.89 71.98 0.71 -1.06 16 2 C -0.04 -0.58 6.08 29.85 0.18 -0.40 16 3 C 0.20 3.74 7.16 138.13 0.99 4.72 16 4 N -0.53 -12.14 11.25 -188.12 -2.12 -14.26 16 5 C -0.05 -0.99 11.87 83.52 0.99 0.00 16 6 C -0.05 -0.73 10.70 83.08 0.89 0.16 16 7 N -0.45 -7.02 2.61 -491.91 -1.28 -8.30 16 8 C 0.15 2.14 2.64 44.99 0.12 2.25 16 9 H 0.11 1.63 6.49 -2.38 -0.02 1.62 16 10 C -0.16 -2.35 8.99 71.98 0.65 -1.70 16 11 C -0.14 -1.71 4.37 29.85 0.13 -1.58 16 12 C 0.53 10.50 7.57 87.66 0.66 11.17 16 13 O -0.57 -14.95 14.22 -3.03 -0.04 -14.99 16 14 N -0.61 -12.36 3.33 -811.85 -2.70 -15.06 16 15 C 0.10 1.68 6.49 86.73 0.56 2.24 16 16 C -0.12 -2.77 6.37 31.78 0.20 -2.56 16 17 C -0.10 -2.75 3.05 -9.41 -0.03 -2.78 16 18 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 19 C 0.17 6.34 5.71 86.38 0.49 6.84 16 20 N -0.75 -36.41 5.55 -343.47 -1.90 -38.32 16 21 C -0.34 -18.56 9.99 84.03 0.84 -17.72 16 22 H 0.06 3.50 7.83 -2.91 -0.02 3.48 16 23 C -0.10 -5.85 5.50 84.86 0.47 -5.38 16 24 N -0.97 -59.37 13.70 21.65 0.30 -59.08 16 25 Si 1.13 50.88 29.92 68.60 2.05 52.93 16 26 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 27 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 28 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 29 C 0.12 2.95 6.38 86.85 0.55 3.51 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.00 7.08 -2.39 -0.02 0.99 16 35 H 0.18 2.56 8.06 -2.91 -0.02 2.53 16 36 H 0.20 1.66 8.06 -2.91 -0.02 1.63 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 1.54 5.95 -2.38 -0.01 1.52 16 39 H 0.07 0.88 7.95 -2.39 -0.02 0.86 16 40 H 0.12 1.10 8.09 -2.38 -0.02 1.08 16 41 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 45 H 0.07 1.83 7.91 -2.39 -0.02 1.81 16 46 H 0.03 0.95 7.97 -2.39 -0.02 0.93 16 47 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.36 17.92 6.50 -92.71 -0.60 17.32 16 49 H 0.25 14.76 6.77 -92.71 -0.63 14.13 16 50 H 0.07 1.77 8.04 -2.39 -0.02 1.76 16 51 H 0.07 1.87 8.04 -2.39 -0.02 1.85 16 Total: -1.00 -73.33 408.93 3.16 -70.17 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.45 Total: 29.19 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: 8.41 Total: -2.29 kcal Atomic # 7 Polarization: -127.31 SS G_CDS: -7.71 Total: -135.02 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.04 Total: -14.99 kcal Atomic # 14 Polarization: 50.88 SS G_CDS: 2.05 Total: 52.93 kcal Total: -73.33 3.16 -70.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731657770.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.361 kcal (2) G-P(sol) polarization free energy of solvation -73.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds