Wall clock time and date at job start Tue Mar 31 2020 19:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46948 * 2 1 4 4 C 1.50706 * 109.46937 * 179.97438 * 3 2 1 5 5 C 1.35360 * 126.39140 * 274.71494 * 4 3 2 6 6 C 1.41501 * 105.50548 * 179.90141 * 5 4 3 7 7 C 1.47706 * 126.51617 * 180.17470 * 6 5 4 8 8 O 1.21576 * 120.00532 * 0.25023 * 7 6 5 9 9 N 1.34782 * 120.00022 * 180.25855 * 7 6 5 10 10 C 1.46499 * 120.00128 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47052 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.46948 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47157 * 177.30490 * 12 11 10 14 14 H 1.08999 * 109.86975 * 306.76794 * 13 12 11 15 15 C 1.54320 * 109.88504 * 185.75289 * 13 12 11 16 16 C 1.55164 * 102.94293 * 218.38668 * 15 13 12 17 17 C 1.54910 * 101.57951 * 35.50317 * 16 15 13 18 18 N 1.47020 * 109.88514 * 67.77955 * 13 12 11 19 19 C 1.36935 * 125.65171 * 298.32098 * 18 13 12 20 20 H 1.08001 * 119.99992 * 343.48974 * 19 18 13 21 21 C 1.38814 * 120.00404 * 163.49130 * 19 18 13 22 22 N 1.31617 * 120.00101 * 161.44801 * 21 19 18 23 23 Si 1.86798 * 119.99858 * 341.45058 * 21 19 18 24 24 H 1.48496 * 109.47255 * 84.79647 * 23 21 19 25 25 H 1.48497 * 109.47231 * 204.79610 * 23 21 19 26 26 H 1.48503 * 109.47219 * 324.79679 * 23 21 19 27 27 N 1.31807 * 106.96153 * 0.36779 * 6 5 4 28 28 N 1.28461 * 110.07424 * 359.77196 * 27 6 5 29 29 H 0.97003 * 124.88752 * 180.02562 * 28 27 6 30 30 H 1.08996 * 109.47070 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47370 * 299.99522 * 1 2 3 32 32 H 1.09004 * 109.47247 * 59.99918 * 1 2 3 33 33 H 1.08999 * 109.47303 * 120.00554 * 2 1 3 34 34 H 1.09004 * 109.47160 * 240.00496 * 2 1 3 35 35 H 1.08993 * 109.47632 * 299.99957 * 3 2 1 36 36 H 1.09003 * 109.47303 * 60.00216 * 3 2 1 37 37 H 1.08005 * 127.24701 * 0.02562 * 5 4 3 38 38 H 0.96992 * 119.99767 * 359.97438 * 9 7 6 39 39 H 1.09002 * 109.46914 * 299.99371 * 10 9 7 40 40 H 1.09002 * 109.47316 * 59.99507 * 10 9 7 41 41 H 1.09002 * 109.46940 * 299.99592 * 11 10 9 42 42 H 1.08993 * 109.47063 * 59.99577 * 11 10 9 43 43 H 1.09004 * 109.47420 * 297.29904 * 12 11 10 44 44 H 1.08999 * 109.47501 * 57.30035 * 12 11 10 45 45 H 1.08997 * 110.72043 * 336.74926 * 15 13 12 46 46 H 1.09000 * 110.72185 * 100.02380 * 15 13 12 47 47 H 1.09001 * 111.00128 * 153.56999 * 16 15 13 48 48 H 1.08997 * 111.00477 * 277.38968 * 16 15 13 49 49 H 1.09001 * 110.36840 * 81.83013 * 17 16 15 50 50 H 1.09002 * 110.36860 * 204.15152 * 17 16 15 51 51 H 0.97005 * 120.00140 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3496 1.3531 1.0869 6 6 5.6718 1.3921 0.5845 7 6 6.9159 1.3223 1.3778 8 8 6.8604 1.2160 2.5876 9 7 8.1128 1.3767 0.7603 10 6 9.3466 1.3069 1.5470 11 6 10.5538 1.3887 0.6105 12 6 11.8424 1.3165 1.4322 13 6 13.0487 1.3307 0.4912 14 1 12.9428 0.5469 -0.2588 15 6 14.3462 1.1132 1.2978 16 6 15.3535 2.0643 0.5989 17 6 14.4415 3.2568 0.2170 18 7 13.1543 2.6412 -0.1667 19 6 12.2161 3.1962 -0.9955 20 1 11.4432 2.5774 -1.4270 21 6 12.2583 4.5540 -1.2810 22 7 11.6173 5.0263 -2.3290 23 14 13.2248 5.7107 -0.1777 24 1 14.6495 5.7190 -0.5964 25 1 12.6679 7.0827 -0.2902 26 1 13.1255 5.2500 1.2305 27 7 5.5822 1.5069 -0.7255 28 7 4.3484 1.5377 -1.0820 29 1 4.0372 1.6174 -1.9973 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9564 0.8900 37 1 4.0449 1.2677 2.1196 38 1 8.1571 1.4612 -0.2049 39 1 9.3759 2.1381 2.2515 40 1 9.3755 0.3650 2.0949 41 1 10.5244 0.5572 -0.0937 42 1 10.5252 2.3303 0.0623 43 1 11.8945 2.1744 2.1025 44 1 11.8490 0.3971 2.0176 45 1 14.2050 1.3996 2.3400 46 1 14.6780 0.0776 1.2229 47 1 16.1379 2.3773 1.2880 48 1 15.7797 1.5976 -0.2892 49 1 14.3065 3.9200 1.0715 50 1 14.8650 3.8037 -0.6254 51 1 11.6465 5.9752 -2.5283 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731752643.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:05 Heat of formation + Delta-G solvation = 39.920034 kcal Electronic energy + Delta-G solvation = -28361.485478 eV Core-core repulsion = 24490.314563 eV Total energy + Delta-G solvation = -3871.170915 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.80278 -39.15398 -38.12221 -35.72263 -35.20095 -32.65547 -32.54930 -31.81009 -31.15586 -29.88236 -28.51314 -26.80567 -25.28357 -24.30390 -23.06503 -22.30279 -21.51125 -21.17126 -20.49675 -19.71502 -19.11133 -17.87340 -16.93768 -16.64697 -15.97981 -15.82216 -15.54058 -15.42434 -15.00495 -14.91588 -14.26596 -13.92026 -13.84800 -13.60640 -13.38541 -13.21059 -12.95663 -12.76800 -12.61875 -12.39938 -12.04082 -11.90716 -11.87772 -11.72597 -11.29467 -11.22092 -11.11471 -10.94079 -10.88442 -10.77855 -10.39838 -10.24875 -10.19259 -9.83999 -9.78277 -9.64100 -9.49742 -9.17378 -9.11170 -8.75633 -8.66284 -6.99104 -5.89273 -3.19039 1.56492 1.97654 2.69865 3.37084 3.41748 3.50772 3.52084 3.55578 4.25741 4.38058 4.53298 4.57884 4.60913 4.90428 4.98025 5.00744 5.24616 5.26519 5.28396 5.32588 5.35238 5.38035 5.46995 5.58662 5.59775 5.61748 5.63560 5.69187 5.82057 5.85951 5.89180 6.01641 6.08248 6.16276 6.22136 6.26231 6.30070 6.37293 6.47721 6.50944 6.64072 6.75146 6.76167 6.84109 6.84757 7.09268 7.18342 7.62126 7.76221 7.89895 8.34639 8.41113 8.86606 9.73582 10.24870 11.26436 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017396 B = 0.002227 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.157828 B =12571.796045 C =13538.331356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.050 4.050 4 C 0.012 3.988 5 C -0.176 4.176 6 C -0.008 4.008 7 C 0.599 3.401 8 O -0.542 6.542 9 N -0.709 5.709 10 C 0.122 3.878 11 C -0.143 4.143 12 C -0.116 4.116 13 C 0.161 3.839 14 H 0.042 0.958 15 C -0.127 4.127 16 C -0.131 4.131 17 C 0.101 3.899 18 N -0.605 5.605 19 C -0.232 4.232 20 H 0.100 0.900 21 C 0.016 3.984 22 N -0.914 5.914 23 Si 0.888 3.112 24 H -0.288 1.288 25 H -0.307 1.307 26 H -0.274 1.274 27 N -0.252 5.252 28 N -0.379 5.379 29 H 0.444 0.556 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.161 0.839 38 H 0.410 0.590 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.113 0.887 43 H 0.059 0.941 44 H 0.048 0.952 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.067 0.933 49 H 0.029 0.971 50 H 0.057 0.943 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.040 -10.360 4.224 19.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.089 4.089 4 C -0.114 4.114 5 C -0.204 4.204 6 C -0.169 4.169 7 C 0.383 3.617 8 O -0.418 6.418 9 N -0.359 5.359 10 C -0.001 4.001 11 C -0.180 4.180 12 C -0.156 4.156 13 C 0.054 3.946 14 H 0.060 0.940 15 C -0.165 4.165 16 C -0.170 4.170 17 C -0.024 4.024 18 N -0.331 5.331 19 C -0.359 4.359 20 H 0.117 0.883 21 C -0.182 4.182 22 N -0.559 5.559 23 Si 0.719 3.281 24 H -0.216 1.216 25 H -0.235 1.235 26 H -0.200 1.200 27 N -0.088 5.088 28 N -0.094 5.094 29 H 0.288 0.712 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.179 0.821 38 H 0.245 0.755 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.131 0.869 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.085 0.915 49 H 0.047 0.953 50 H 0.076 0.924 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.477 -10.172 4.028 18.953 hybrid contribution -0.123 0.914 0.292 0.967 sum -15.600 -9.258 4.319 18.647 Atomic orbital electron populations 1.21780 0.95238 1.02022 1.02016 1.21548 0.95977 0.95518 1.02906 1.20216 0.86314 0.98261 1.04079 1.21415 0.94988 1.07565 0.87387 1.21487 0.90444 1.08748 0.99703 1.22004 0.95329 1.09689 0.89885 1.16897 0.81802 0.76681 0.86288 1.90769 1.86960 1.50817 1.13208 1.45947 1.05317 1.72839 1.11826 1.21524 0.82725 1.01374 0.94525 1.22157 0.92115 1.05629 0.98147 1.21883 0.95223 1.00252 0.98205 1.20981 0.92004 0.89221 0.92346 0.94007 1.22607 0.95887 0.98870 0.99140 1.22707 0.97073 0.97399 0.99812 1.22125 0.87164 0.94884 0.98236 1.44949 1.16618 1.17232 1.54276 1.18660 1.07327 0.91749 1.18166 0.88299 1.24937 0.98629 0.96686 0.97899 1.69791 1.46396 1.13882 1.25827 0.86997 0.78983 0.80043 0.82040 1.21575 1.23545 1.20000 1.73630 1.01429 1.18576 1.15134 1.43328 1.02947 1.53200 1.09882 0.71169 0.92444 0.92387 0.92658 0.91130 0.91955 0.90582 0.89015 0.82148 0.75496 0.91659 0.92228 0.92435 0.86877 0.92178 0.93346 0.91698 0.91784 0.91992 0.91471 0.95300 0.92445 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.91 37.16 0.37 -0.30 16 2 C -0.12 -0.66 5.92 -26.73 -0.16 -0.82 16 3 C -0.05 -0.29 5.77 -27.88 -0.16 -0.45 16 4 C 0.01 0.11 6.48 -82.21 -0.53 -0.42 16 5 C -0.18 -2.17 10.73 -39.37 -0.42 -2.59 16 6 C -0.01 -0.12 7.13 -82.77 -0.59 -0.71 16 7 C 0.60 10.29 7.83 -12.39 -0.10 10.20 16 8 O -0.54 -10.58 16.93 5.30 0.09 -10.49 16 9 N -0.71 -11.68 5.55 -61.29 -0.34 -12.02 16 10 C 0.12 2.02 5.67 -4.04 -0.02 2.00 16 11 C -0.14 -2.53 4.64 -26.73 -0.12 -2.65 16 12 C -0.12 -2.00 4.72 -26.74 -0.13 -2.13 16 13 C 0.16 3.04 3.22 -66.96 -0.22 2.82 16 14 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 15 C -0.13 -2.00 6.48 -24.89 -0.16 -2.16 16 16 C -0.13 -2.21 7.09 -24.58 -0.17 -2.38 16 17 C 0.10 2.18 4.67 -2.35 -0.01 2.17 16 18 N -0.60 -13.99 2.99 -162.31 -0.48 -14.48 16 19 C -0.23 -6.21 8.39 -15.06 -0.13 -6.33 16 20 H 0.10 2.75 6.63 -52.49 -0.35 2.40 16 21 C 0.02 0.46 5.47 -17.43 -0.10 0.37 16 22 N -0.91 -27.77 13.97 55.49 0.78 -26.99 16 23 Si 0.89 22.79 24.24 -169.99 -4.12 18.67 16 24 H -0.29 -7.20 6.43 56.52 0.36 -6.83 16 25 H -0.31 -8.10 7.11 56.52 0.40 -7.70 16 26 H -0.27 -6.92 6.21 56.52 0.35 -6.57 16 27 N -0.25 -3.44 11.92 33.42 0.40 -3.04 16 28 N -0.38 -3.73 6.83 33.50 0.23 -3.50 16 29 H 0.44 2.77 8.96 -190.44 -1.71 1.06 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.16 1.81 8.06 -52.48 -0.42 1.39 16 38 H 0.41 6.51 8.20 -40.82 -0.33 6.18 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.11 2.43 4.92 -51.93 -0.26 2.17 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.97 7.85 -51.93 -0.41 0.56 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.03 0.66 5.44 -51.93 -0.28 0.38 16 50 H 0.06 1.34 6.13 -51.93 -0.32 1.02 16 51 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 401.05 15.07 6.04 6.04 Total: -1.00 -33.63 401.05 -10.12 -43.75 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -10.07 Total: 5.46 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -2.65 Total: -3.40 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.58 Total: -60.03 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.12 Total: 18.67 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.63 -10.12 -43.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731752643.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.670 kcal (2) G-P(sol) polarization free energy of solvation -33.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds