Wall clock time and date at job start Tue Mar 31 2020 19:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46948 * 2 1 4 4 C 1.50706 * 109.46937 * 179.97438 * 3 2 1 5 5 C 1.35360 * 126.39140 * 274.71494 * 4 3 2 6 6 C 1.41501 * 105.50548 * 179.90141 * 5 4 3 7 7 C 1.47706 * 126.51617 * 180.17470 * 6 5 4 8 8 O 1.21576 * 120.00532 * 0.25023 * 7 6 5 9 9 N 1.34782 * 120.00022 * 180.25855 * 7 6 5 10 10 C 1.46499 * 120.00128 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47052 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.46948 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47157 * 177.30490 * 12 11 10 14 14 H 1.08999 * 109.86975 * 306.76794 * 13 12 11 15 15 C 1.54320 * 109.88504 * 185.75289 * 13 12 11 16 16 C 1.55164 * 102.94293 * 218.38668 * 15 13 12 17 17 C 1.54910 * 101.57951 * 35.50317 * 16 15 13 18 18 N 1.47020 * 109.88514 * 67.77955 * 13 12 11 19 19 C 1.36935 * 125.65171 * 298.32098 * 18 13 12 20 20 H 1.08001 * 119.99992 * 343.48974 * 19 18 13 21 21 C 1.38814 * 120.00404 * 163.49130 * 19 18 13 22 22 N 1.31617 * 120.00101 * 161.44801 * 21 19 18 23 23 Si 1.86798 * 119.99858 * 341.45058 * 21 19 18 24 24 H 1.48496 * 109.47255 * 84.79647 * 23 21 19 25 25 H 1.48497 * 109.47231 * 204.79610 * 23 21 19 26 26 H 1.48503 * 109.47219 * 324.79679 * 23 21 19 27 27 N 1.31807 * 106.96153 * 0.36779 * 6 5 4 28 28 N 1.28461 * 110.07424 * 359.77196 * 27 6 5 29 29 H 0.97003 * 124.88752 * 180.02562 * 28 27 6 30 30 H 1.08996 * 109.47070 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47370 * 299.99522 * 1 2 3 32 32 H 1.09004 * 109.47247 * 59.99918 * 1 2 3 33 33 H 1.08999 * 109.47303 * 120.00554 * 2 1 3 34 34 H 1.09004 * 109.47160 * 240.00496 * 2 1 3 35 35 H 1.08993 * 109.47632 * 299.99957 * 3 2 1 36 36 H 1.09003 * 109.47303 * 60.00216 * 3 2 1 37 37 H 1.08005 * 127.24701 * 0.02562 * 5 4 3 38 38 H 0.96992 * 119.99767 * 359.97438 * 9 7 6 39 39 H 1.09002 * 109.46914 * 299.99371 * 10 9 7 40 40 H 1.09002 * 109.47316 * 59.99507 * 10 9 7 41 41 H 1.09002 * 109.46940 * 299.99592 * 11 10 9 42 42 H 1.08993 * 109.47063 * 59.99577 * 11 10 9 43 43 H 1.09004 * 109.47420 * 297.29904 * 12 11 10 44 44 H 1.08999 * 109.47501 * 57.30035 * 12 11 10 45 45 H 1.08997 * 110.72043 * 336.74926 * 15 13 12 46 46 H 1.09000 * 110.72185 * 100.02380 * 15 13 12 47 47 H 1.09001 * 111.00128 * 153.56999 * 16 15 13 48 48 H 1.08997 * 111.00477 * 277.38968 * 16 15 13 49 49 H 1.09001 * 110.36840 * 81.83013 * 17 16 15 50 50 H 1.09002 * 110.36860 * 204.15152 * 17 16 15 51 51 H 0.97005 * 120.00140 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3496 1.3531 1.0869 6 6 5.6718 1.3921 0.5845 7 6 6.9159 1.3223 1.3778 8 8 6.8604 1.2160 2.5876 9 7 8.1128 1.3767 0.7603 10 6 9.3466 1.3069 1.5470 11 6 10.5538 1.3887 0.6105 12 6 11.8424 1.3165 1.4322 13 6 13.0487 1.3307 0.4912 14 1 12.9428 0.5469 -0.2588 15 6 14.3462 1.1132 1.2978 16 6 15.3535 2.0643 0.5989 17 6 14.4415 3.2568 0.2170 18 7 13.1543 2.6412 -0.1667 19 6 12.2161 3.1962 -0.9955 20 1 11.4432 2.5774 -1.4270 21 6 12.2583 4.5540 -1.2810 22 7 11.6173 5.0263 -2.3290 23 14 13.2248 5.7107 -0.1777 24 1 14.6495 5.7190 -0.5964 25 1 12.6679 7.0827 -0.2902 26 1 13.1255 5.2500 1.2305 27 7 5.5822 1.5069 -0.7255 28 7 4.3484 1.5377 -1.0820 29 1 4.0372 1.6174 -1.9973 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9564 0.8900 37 1 4.0449 1.2677 2.1196 38 1 8.1571 1.4612 -0.2049 39 1 9.3759 2.1381 2.2515 40 1 9.3755 0.3650 2.0949 41 1 10.5244 0.5572 -0.0937 42 1 10.5252 2.3303 0.0623 43 1 11.8945 2.1744 2.1025 44 1 11.8490 0.3971 2.0176 45 1 14.2050 1.3996 2.3400 46 1 14.6780 0.0776 1.2229 47 1 16.1379 2.3773 1.2880 48 1 15.7797 1.5976 -0.2892 49 1 14.3065 3.9200 1.0715 50 1 14.8650 3.8037 -0.6254 51 1 11.6465 5.9752 -2.5283 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731752643.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:03 Heat of formation + Delta-G solvation = 16.570974 kcal Electronic energy + Delta-G solvation = -28362.497969 eV Core-core repulsion = 24490.314563 eV Total energy + Delta-G solvation = -3872.183406 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.74284 -40.52155 -39.69780 -36.63360 -36.23960 -34.57944 -33.99270 -32.86319 -31.90525 -31.71915 -29.94498 -27.42056 -26.70476 -26.07652 -24.41568 -23.09190 -22.84275 -21.97659 -21.88543 -21.02447 -20.64951 -18.82497 -18.69719 -17.91645 -17.48438 -17.02719 -16.97644 -16.70300 -16.22929 -15.92134 -15.35152 -15.16473 -14.99061 -14.87085 -14.74337 -14.53750 -14.32168 -13.96941 -13.84783 -13.63772 -13.42905 -13.11271 -13.05491 -12.72743 -12.60585 -12.46558 -12.41620 -12.12755 -12.07395 -11.91939 -11.82908 -11.61534 -11.53213 -11.48510 -11.35123 -11.16511 -11.01943 -10.72013 -10.54089 -10.08867 -9.98340 -8.95466 -8.08082 -5.31722 0.45796 1.07425 1.29325 1.38710 1.44732 1.84281 2.23300 2.30928 2.45722 3.15684 3.34599 3.37227 3.63176 3.85541 3.94487 3.97370 4.11489 4.16869 4.17643 4.23910 4.28041 4.44187 4.46715 4.50811 4.55439 4.67943 4.69651 4.77312 4.82740 4.84844 4.86565 4.93562 4.97061 4.99154 5.03416 5.16519 5.20484 5.22802 5.27763 5.30236 5.34836 5.39149 5.40323 5.48131 5.61219 5.65261 5.82147 6.07120 6.19896 6.40521 6.82466 6.85824 7.08519 7.64853 8.22633 9.11362 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017396 B = 0.002227 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.157828 B =12571.796045 C =13538.331356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.046 4.046 4 C 0.038 3.962 5 C -0.197 4.197 6 C -0.038 4.038 7 C 0.597 3.403 8 O -0.572 6.572 9 N -0.709 5.709 10 C 0.130 3.870 11 C -0.131 4.131 12 C -0.110 4.110 13 C 0.150 3.850 14 H 0.042 0.958 15 C -0.116 4.116 16 C -0.120 4.120 17 C 0.089 3.911 18 N -0.622 5.622 19 C -0.198 4.198 20 H 0.079 0.921 21 C -0.048 4.048 22 N -0.964 5.964 23 Si 0.940 3.060 24 H -0.279 1.279 25 H -0.321 1.321 26 H -0.268 1.268 27 N -0.273 5.273 28 N -0.363 5.363 29 H 0.460 0.540 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.165 0.835 38 H 0.411 0.589 39 H 0.051 0.949 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.045 0.955 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.098 0.902 47 H 0.092 0.908 48 H 0.073 0.927 49 H 0.023 0.977 50 H 0.034 0.966 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.193 -12.150 5.326 20.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.085 4.085 4 C -0.089 4.089 5 C -0.225 4.225 6 C -0.197 4.197 7 C 0.382 3.618 8 O -0.451 6.451 9 N -0.359 5.359 10 C 0.006 3.994 11 C -0.168 4.168 12 C -0.150 4.150 13 C 0.044 3.956 14 H 0.060 0.940 15 C -0.154 4.154 16 C -0.159 4.159 17 C -0.035 4.035 18 N -0.348 5.348 19 C -0.327 4.327 20 H 0.097 0.903 21 C -0.241 4.241 22 N -0.613 5.613 23 Si 0.771 3.229 24 H -0.205 1.205 25 H -0.251 1.251 26 H -0.194 1.194 27 N -0.110 5.110 28 N -0.080 5.080 29 H 0.308 0.692 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.182 0.818 38 H 0.247 0.753 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.116 0.884 47 H 0.111 0.889 48 H 0.092 0.908 49 H 0.040 0.960 50 H 0.053 0.947 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.591 -12.001 5.142 20.336 hybrid contribution -0.164 1.341 -0.099 1.354 sum -15.755 -10.661 5.044 19.680 Atomic orbital electron populations 1.21760 0.94148 1.02272 1.02643 1.21513 0.96840 0.94991 1.02378 1.20393 0.83317 0.98955 1.05853 1.21869 0.96441 1.04483 0.86079 1.21684 0.89853 1.10059 1.00911 1.21825 0.95258 1.12072 0.90542 1.17235 0.82520 0.75842 0.86179 1.90731 1.87501 1.52384 1.14436 1.45971 1.05384 1.72660 1.11872 1.21407 0.82431 1.01488 0.94026 1.21939 0.93225 1.03476 0.98198 1.21828 0.94003 1.01433 0.97752 1.21282 0.94651 0.86729 0.92895 0.94041 1.22619 0.93209 1.00624 0.98938 1.22679 0.97042 0.95185 1.00948 1.22235 0.87413 0.96898 0.96999 1.45153 1.16678 1.18657 1.54304 1.18670 1.06348 0.91252 1.16455 0.90299 1.25475 1.00889 0.98336 0.99381 1.69910 1.49723 1.13623 1.28013 0.86139 0.78273 0.77640 0.80814 1.20529 1.25096 1.19363 1.73551 1.03348 1.19460 1.14677 1.43432 1.02036 1.51484 1.11041 0.69170 0.92446 0.92027 0.91771 0.92209 0.92055 0.88140 0.87925 0.81756 0.75338 0.93077 0.90725 0.91702 0.91111 0.93611 0.89658 0.90387 0.88364 0.88923 0.90844 0.95988 0.94741 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 71.98 0.71 -0.27 16 2 C -0.12 -1.06 5.92 30.59 0.18 -0.88 16 3 C -0.05 -0.42 5.77 29.85 0.17 -0.24 16 4 C 0.04 0.66 6.48 41.40 0.27 0.93 16 5 C -0.20 -4.82 10.73 22.41 0.24 -4.58 16 6 C -0.04 -1.14 7.13 42.46 0.30 -0.84 16 7 C 0.60 21.16 7.83 86.74 0.68 21.84 16 8 O -0.57 -22.98 16.93 -3.95 -0.07 -23.05 16 9 N -0.71 -24.12 5.55 -466.08 -2.59 -26.71 16 10 C 0.13 4.34 5.67 86.38 0.49 4.83 16 11 C -0.13 -4.62 4.64 30.59 0.14 -4.48 16 12 C -0.11 -3.63 4.72 30.59 0.14 -3.48 16 13 C 0.15 5.31 3.22 45.34 0.15 5.46 16 14 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 15 C -0.12 -3.15 6.48 31.78 0.21 -2.94 16 16 C -0.12 -3.59 7.09 31.99 0.23 -3.37 16 17 C 0.09 3.72 4.67 86.79 0.41 4.13 16 18 N -0.62 -28.45 2.99 -667.44 -1.99 -30.44 16 19 C -0.20 -10.88 8.39 84.03 0.70 -10.18 16 20 H 0.08 4.58 6.63 -2.91 -0.02 4.56 16 21 C -0.05 -2.83 5.47 84.86 0.46 -2.36 16 22 N -0.96 -61.17 13.97 21.65 0.30 -60.87 16 23 Si 0.94 48.42 24.24 68.60 1.66 50.08 16 24 H -0.28 -13.69 6.43 99.48 0.64 -13.05 16 25 H -0.32 -17.12 7.11 99.48 0.71 -16.42 16 26 H -0.27 -13.31 6.21 99.48 0.62 -12.69 16 27 N -0.27 -7.49 11.92 -48.18 -0.57 -8.07 16 28 N -0.36 -6.73 6.83 -47.93 -0.33 -7.06 16 29 H 0.46 4.93 8.96 -219.99 -1.97 2.96 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.16 3.75 8.06 -2.91 -0.02 3.72 16 38 H 0.41 13.68 8.20 -92.71 -0.76 12.92 16 39 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.07 3.15 4.92 -2.39 -0.01 3.14 16 43 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 44 H 0.08 2.21 8.14 -2.39 -0.02 2.20 16 45 H 0.08 1.95 7.85 -2.39 -0.02 1.93 16 46 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 48 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 49 H 0.02 0.97 5.44 -2.39 -0.01 0.96 16 50 H 0.03 1.59 6.13 -2.39 -0.01 1.57 16 51 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -76.60 401.05 -0.05 -76.65 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: -1.95 Total: 25.92 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 5.49 Total: 3.54 kcal Atomic # 7 Polarization: -127.96 SS G_CDS: -5.18 Total: -133.14 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.07 Total: -23.05 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 1.66 Total: 50.08 kcal Total: -76.60 -0.05 -76.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731752643.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.221 kcal (2) G-P(sol) polarization free energy of solvation -76.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds