Wall clock time and date at job start Tue Mar 31 2020 20:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46788 * 2 1 4 4 C 1.50700 * 109.47146 * 119.99932 * 2 1 3 5 5 O 1.21286 * 119.99972 * 115.71559 * 4 2 1 6 6 N 1.34773 * 120.00308 * 295.71914 * 4 2 1 7 7 C 1.46493 * 120.00216 * 179.97438 * 6 4 2 8 8 C 1.53005 * 109.47480 * 180.02562 * 7 6 4 9 9 C 1.52992 * 109.47394 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.47239 * 184.96187 * 9 8 7 11 11 H 1.09003 * 109.86832 * 54.45054 * 10 9 8 12 12 C 1.54322 * 110.01307 * 293.34991 * 10 9 8 13 13 C 1.55152 * 102.94327 * 218.31516 * 12 10 9 14 14 C 1.54913 * 101.58133 * 35.50102 * 13 12 10 15 15 N 1.47021 * 109.88213 * 175.45806 * 10 9 8 16 16 C 1.36935 * 125.65260 * 298.48372 * 15 10 9 17 17 H 1.07999 * 119.99731 * 347.39032 * 16 15 10 18 18 C 1.38813 * 119.99846 * 167.39345 * 16 15 10 19 19 N 1.31614 * 120.00256 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99780 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46783 * 60.00104 * 20 18 16 22 22 H 1.48495 * 109.46979 * 179.97438 * 20 18 16 23 23 H 1.48489 * 109.46931 * 299.99948 * 20 18 16 24 24 C 1.50700 * 109.47198 * 240.00263 * 2 1 3 25 25 C 1.34668 * 126.59047 * 125.75058 * 24 2 1 26 26 N 1.34128 * 108.01694 * 179.87413 * 25 24 2 27 27 C 1.30493 * 109.26050 * 0.39885 * 26 25 24 28 28 N 1.35042 * 108.69716 * 359.75477 * 27 26 25 29 29 H 0.97004 * 126.39896 * 179.97438 * 28 27 26 30 30 H 1.08997 * 109.47293 * 299.99594 * 1 2 3 31 31 H 1.08999 * 109.47333 * 60.00178 * 1 2 3 32 32 H 1.09002 * 109.47341 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46867 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47398 * 299.99771 * 3 2 1 35 35 H 1.08998 * 109.47087 * 60.00646 * 3 2 1 36 36 H 0.97000 * 119.99929 * 0.02562 * 6 4 2 37 37 H 1.09002 * 109.47213 * 59.99768 * 7 6 4 38 38 H 1.09008 * 109.47474 * 299.99829 * 7 6 4 39 39 H 1.08997 * 109.46872 * 59.99348 * 8 7 6 40 40 H 1.09008 * 109.46455 * 300.00242 * 8 7 6 41 41 H 1.09006 * 109.46973 * 64.96589 * 9 8 7 42 42 H 1.08999 * 109.47645 * 304.96448 * 9 8 7 43 43 H 1.08999 * 110.71538 * 99.94816 * 12 10 9 44 44 H 1.08997 * 110.71951 * 336.68159 * 12 10 9 45 45 H 1.09000 * 111.00295 * 277.42979 * 13 12 10 46 46 H 1.08997 * 111.00701 * 153.57710 * 13 12 10 47 47 H 1.09000 * 110.36711 * 81.83072 * 14 13 12 48 48 H 1.08995 * 110.36679 * 204.03999 * 14 13 12 49 49 H 0.97000 * 120.00387 * 180.02562 * 19 18 16 50 50 H 1.08001 * 125.99189 * 0.02562 * 25 24 2 51 51 H 1.07999 * 125.65508 * 179.73575 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.6642 -1.7399 1.1209 6 7 1.7795 -0.2019 2.4527 7 6 2.2673 -0.8927 3.6488 8 6 1.8467 -0.1123 4.8958 9 6 2.3568 -0.8335 6.1450 10 6 1.8324 -0.1226 7.3943 11 1 0.7463 -0.0428 7.3468 12 6 2.4577 1.2841 7.5031 13 6 2.7006 1.4395 9.0276 14 6 3.0835 -0.0065 9.4305 15 7 2.2267 -0.8699 8.5974 16 6 1.8584 -2.1547 8.8953 17 1 1.0708 -2.6347 8.3336 18 6 2.4975 -2.8401 9.9194 19 7 3.4577 -2.2552 10.6037 20 14 1.9947 -4.5926 10.3263 21 1 2.1990 -5.4553 9.1350 22 1 2.8237 -5.0971 11.4503 23 1 0.5622 -4.6185 10.7165 24 6 2.0323 -0.7103 -1.2305 25 6 2.8955 -0.2235 -2.1423 26 7 3.0862 -1.1657 -3.0777 27 6 2.3674 -2.2147 -2.7847 28 7 1.6944 -1.9722 -1.6394 29 1 1.0849 -2.5788 -1.1904 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.2738 0.6212 2.5404 37 1 3.3546 -0.9601 3.6114 38 1 1.8423 -1.8958 3.6879 39 1 0.7594 -0.0453 4.9329 40 1 2.2714 0.8909 4.8570 41 1 3.4467 -0.8225 6.1513 42 1 2.0039 -1.8648 6.1388 43 1 1.7634 2.0436 7.1437 44 1 3.3992 1.3310 6.9558 45 1 1.7918 1.7594 9.5373 46 1 3.5207 2.1300 9.2242 47 1 4.1353 -0.1945 9.2148 48 1 2.8784 -0.1726 10.4880 49 1 3.9045 -2.7343 11.3191 50 1 3.3557 0.7534 -2.1224 51 1 2.3186 -3.1257 -3.3626 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731757011.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:27 Heat of formation + Delta-G solvation = 24.645232 kcal Electronic energy + Delta-G solvation = -28762.397816 eV Core-core repulsion = 24890.564536 eV Total energy + Delta-G solvation = -3871.833280 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.42507 -40.05812 -37.88105 -35.82014 -35.56775 -32.96447 -32.61308 -32.09845 -29.44582 -29.04480 -28.06451 -27.72003 -25.09974 -24.41418 -23.58595 -21.92296 -21.57263 -21.14224 -20.17553 -19.94873 -19.15564 -18.35747 -16.93688 -16.73818 -16.12685 -15.79723 -15.16043 -15.01458 -14.79678 -14.49229 -14.36930 -14.30021 -14.06733 -13.78490 -13.73207 -13.21587 -12.82892 -12.70239 -12.64566 -12.35759 -12.11639 -12.03722 -11.91521 -11.77600 -11.65785 -11.47244 -11.04946 -10.82265 -10.74497 -10.59064 -10.27046 -10.17390 -10.12566 -10.01179 -9.94261 -9.77751 -9.61607 -9.60353 -9.20178 -8.61667 -8.57454 -6.78142 -5.72785 -3.07944 1.77934 2.39998 2.86776 2.89935 3.11504 3.39464 3.44218 3.45040 4.05018 4.29952 4.40606 4.48884 4.50860 4.62516 4.96693 5.04910 5.10736 5.12869 5.13981 5.24340 5.29551 5.34479 5.43347 5.44394 5.56725 5.57975 5.59357 5.64582 5.71676 5.83881 5.92041 5.98492 6.00819 6.07698 6.24556 6.32446 6.33791 6.41030 6.48845 6.55948 6.68934 6.71957 6.93814 7.13422 7.15943 7.29924 7.56766 7.62729 7.81919 7.84355 8.00220 8.30765 9.21623 9.83318 10.52017 11.38831 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017072 B = 0.002137 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.761455 B =13098.868048 C =14167.211847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.006 4.006 3 C -0.139 4.139 4 C 0.516 3.484 5 O -0.533 6.533 6 N -0.723 5.723 7 C 0.118 3.882 8 C -0.126 4.126 9 C -0.122 4.122 10 C 0.163 3.837 11 H 0.030 0.970 12 C -0.124 4.124 13 C -0.150 4.150 14 C 0.171 3.829 15 N -0.597 5.597 16 C -0.226 4.226 17 H 0.074 0.926 18 C -0.006 4.006 19 N -0.919 5.919 20 Si 0.909 3.091 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.006 3.994 25 C -0.019 4.019 26 N -0.495 5.495 27 C 0.185 3.815 28 N -0.552 5.552 29 H 0.418 0.582 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.399 0.601 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.021 0.979 48 H 0.073 0.927 49 H 0.253 0.747 50 H 0.168 0.832 51 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.957 8.998 -22.208 24.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.011 4.011 3 C -0.197 4.197 4 C 0.301 3.699 5 O -0.409 6.409 6 N -0.375 5.375 7 C -0.005 4.005 8 C -0.165 4.165 9 C -0.162 4.162 10 C 0.055 3.945 11 H 0.048 0.952 12 C -0.162 4.162 13 C -0.189 4.189 14 C 0.046 3.954 15 N -0.321 5.321 16 C -0.355 4.355 17 H 0.091 0.909 18 C -0.203 4.203 19 N -0.566 5.566 20 Si 0.739 3.261 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.212 1.212 24 C -0.111 4.111 25 C -0.168 4.168 26 N -0.214 5.214 27 C -0.099 4.099 28 N -0.153 5.153 29 H 0.256 0.744 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.234 0.766 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.040 0.960 48 H 0.091 0.909 49 H 0.063 0.937 50 H 0.185 0.815 51 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -5.873 8.155 -22.790 24.907 hybrid contribution -1.159 -1.137 1.212 2.026 sum -7.032 7.018 -21.578 23.755 Atomic orbital electron populations 1.21903 0.91600 1.02758 1.03654 1.19242 0.97012 0.96069 0.88778 1.21867 1.02480 0.91850 1.03516 1.20433 0.79870 0.85220 0.84417 1.90738 1.39567 1.23999 1.86615 1.46078 1.57114 1.28420 1.05872 1.21531 0.99719 0.96356 0.82914 1.21832 1.01228 0.99523 0.93913 1.22028 1.00879 1.00226 0.93079 1.20916 0.96032 0.90296 0.87241 0.95235 1.22585 0.99830 0.96608 0.97179 1.23015 1.00153 1.00330 0.95422 1.21443 0.93123 0.83918 0.96874 1.44541 1.58104 1.11835 1.17584 1.18916 1.13858 0.87884 1.14838 0.90864 1.24865 0.97699 0.98175 0.99525 1.69921 1.26247 1.36259 1.24163 0.86252 0.77612 0.84588 0.77640 1.21135 1.21608 1.21184 1.20442 1.04618 0.87120 0.98916 1.22036 1.01128 1.00328 0.93273 1.70274 1.22374 1.00901 1.27881 1.24916 0.95486 1.00610 0.88889 1.43110 1.36907 1.13953 1.21344 0.74404 0.90964 0.90727 0.92421 0.91147 0.90512 0.91092 0.76638 0.91412 0.91472 0.91766 0.91650 0.92227 0.91708 0.92661 0.92063 0.92496 0.92561 0.96049 0.90873 0.93680 0.81486 0.77689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 8.40 37.16 0.31 -0.49 16 2 C -0.01 -0.05 0.85 -156.81 -0.13 -0.18 16 3 C -0.14 -0.79 7.30 37.16 0.27 -0.52 16 4 C 0.52 5.73 6.48 -10.99 -0.07 5.66 16 5 O -0.53 -8.30 15.91 5.55 0.09 -8.22 16 6 N -0.72 -6.94 5.37 -60.29 -0.32 -7.27 16 7 C 0.12 1.44 5.67 -4.04 -0.02 1.42 16 8 C -0.13 -1.54 5.10 -26.73 -0.14 -1.67 16 9 C -0.12 -2.09 4.71 -26.73 -0.13 -2.21 16 10 C 0.16 3.16 3.16 -66.95 -0.21 2.94 16 11 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 12 C -0.12 -2.05 5.68 -24.90 -0.14 -2.19 16 13 C -0.15 -2.79 7.09 -24.58 -0.17 -2.96 16 14 C 0.17 4.11 5.45 -2.52 -0.01 4.10 16 15 N -0.60 -14.78 3.13 -162.57 -0.51 -15.29 16 16 C -0.23 -6.18 9.73 -15.06 -0.15 -6.32 16 17 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 18 C -0.01 -0.17 5.47 -17.43 -0.10 -0.26 16 19 N -0.92 -26.85 10.50 55.49 0.58 -26.27 16 20 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.01 0.06 4.97 -81.60 -0.41 -0.35 16 25 C -0.02 -0.21 10.87 -17.81 -0.19 -0.40 16 26 N -0.50 -5.99 11.25 -14.67 -0.17 -6.15 16 27 C 0.18 1.72 13.04 -90.38 -1.18 0.54 16 28 N -0.55 -4.94 5.97 -10.30 -0.06 -5.00 16 29 H 0.42 2.96 8.96 -40.82 -0.37 2.59 16 30 H 0.07 0.31 7.86 -51.93 -0.41 -0.09 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.47 7.76 -51.93 -0.40 0.06 16 34 H 0.08 0.34 8.11 -51.93 -0.42 -0.08 16 35 H 0.07 0.29 7.33 -51.93 -0.38 -0.09 16 36 H 0.40 2.65 7.36 -40.82 -0.30 2.35 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.71 7.62 -51.92 -0.40 0.32 16 41 H 0.06 1.10 8.04 -51.93 -0.42 0.68 16 42 H 0.06 1.24 7.86 -51.93 -0.41 0.83 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.97 7.79 -51.93 -0.40 0.57 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.02 0.56 8.10 -51.93 -0.42 0.14 16 48 H 0.07 1.97 6.78 -51.93 -0.35 1.62 16 49 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 50 H 0.17 1.48 7.30 -52.49 -0.38 1.10 16 51 H 0.21 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 405.31 15.07 6.11 6.11 Total: -1.00 -35.07 405.31 -10.61 -45.68 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -8.84 Total: 2.32 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -2.47 Total: -2.90 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -0.48 Total: -59.98 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.22 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.07 -10.61 -45.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731757011.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.323 kcal (2) G-P(sol) polarization free energy of solvation -35.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds