Wall clock time and date at job start Tue Mar 31 2020 20:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46788 * 2 1 4 4 C 1.50700 * 109.47146 * 119.99932 * 2 1 3 5 5 O 1.21286 * 119.99972 * 115.71559 * 4 2 1 6 6 N 1.34773 * 120.00308 * 295.71914 * 4 2 1 7 7 C 1.46493 * 120.00216 * 179.97438 * 6 4 2 8 8 C 1.53005 * 109.47480 * 180.02562 * 7 6 4 9 9 C 1.52992 * 109.47394 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.47239 * 184.96187 * 9 8 7 11 11 H 1.09003 * 109.86832 * 54.45054 * 10 9 8 12 12 C 1.54322 * 110.01307 * 293.34991 * 10 9 8 13 13 C 1.55152 * 102.94327 * 218.31516 * 12 10 9 14 14 C 1.54913 * 101.58133 * 35.50102 * 13 12 10 15 15 N 1.47021 * 109.88213 * 175.45806 * 10 9 8 16 16 C 1.36935 * 125.65260 * 298.48372 * 15 10 9 17 17 H 1.07999 * 119.99731 * 347.39032 * 16 15 10 18 18 C 1.38813 * 119.99846 * 167.39345 * 16 15 10 19 19 N 1.31614 * 120.00256 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99780 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46783 * 60.00104 * 20 18 16 22 22 H 1.48495 * 109.46979 * 179.97438 * 20 18 16 23 23 H 1.48489 * 109.46931 * 299.99948 * 20 18 16 24 24 C 1.50700 * 109.47198 * 240.00263 * 2 1 3 25 25 C 1.34668 * 126.59047 * 125.75058 * 24 2 1 26 26 N 1.34128 * 108.01694 * 179.87413 * 25 24 2 27 27 C 1.30493 * 109.26050 * 0.39885 * 26 25 24 28 28 N 1.35042 * 108.69716 * 359.75477 * 27 26 25 29 29 H 0.97004 * 126.39896 * 179.97438 * 28 27 26 30 30 H 1.08997 * 109.47293 * 299.99594 * 1 2 3 31 31 H 1.08999 * 109.47333 * 60.00178 * 1 2 3 32 32 H 1.09002 * 109.47341 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46867 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47398 * 299.99771 * 3 2 1 35 35 H 1.08998 * 109.47087 * 60.00646 * 3 2 1 36 36 H 0.97000 * 119.99929 * 0.02562 * 6 4 2 37 37 H 1.09002 * 109.47213 * 59.99768 * 7 6 4 38 38 H 1.09008 * 109.47474 * 299.99829 * 7 6 4 39 39 H 1.08997 * 109.46872 * 59.99348 * 8 7 6 40 40 H 1.09008 * 109.46455 * 300.00242 * 8 7 6 41 41 H 1.09006 * 109.46973 * 64.96589 * 9 8 7 42 42 H 1.08999 * 109.47645 * 304.96448 * 9 8 7 43 43 H 1.08999 * 110.71538 * 99.94816 * 12 10 9 44 44 H 1.08997 * 110.71951 * 336.68159 * 12 10 9 45 45 H 1.09000 * 111.00295 * 277.42979 * 13 12 10 46 46 H 1.08997 * 111.00701 * 153.57710 * 13 12 10 47 47 H 1.09000 * 110.36711 * 81.83072 * 14 13 12 48 48 H 1.08995 * 110.36679 * 204.03999 * 14 13 12 49 49 H 0.97000 * 120.00387 * 180.02562 * 19 18 16 50 50 H 1.08001 * 125.99189 * 0.02562 * 25 24 2 51 51 H 1.07999 * 125.65508 * 179.73575 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.6642 -1.7399 1.1209 6 7 1.7795 -0.2019 2.4527 7 6 2.2673 -0.8927 3.6488 8 6 1.8467 -0.1123 4.8958 9 6 2.3568 -0.8335 6.1450 10 6 1.8324 -0.1226 7.3943 11 1 0.7463 -0.0428 7.3468 12 6 2.4577 1.2841 7.5031 13 6 2.7006 1.4395 9.0276 14 6 3.0835 -0.0065 9.4305 15 7 2.2267 -0.8699 8.5974 16 6 1.8584 -2.1547 8.8953 17 1 1.0708 -2.6347 8.3336 18 6 2.4975 -2.8401 9.9194 19 7 3.4577 -2.2552 10.6037 20 14 1.9947 -4.5926 10.3263 21 1 2.1990 -5.4553 9.1350 22 1 2.8237 -5.0971 11.4503 23 1 0.5622 -4.6185 10.7165 24 6 2.0323 -0.7103 -1.2305 25 6 2.8955 -0.2235 -2.1423 26 7 3.0862 -1.1657 -3.0777 27 6 2.3674 -2.2147 -2.7847 28 7 1.6944 -1.9722 -1.6394 29 1 1.0849 -2.5788 -1.1904 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.2738 0.6212 2.5404 37 1 3.3546 -0.9601 3.6114 38 1 1.8423 -1.8958 3.6879 39 1 0.7594 -0.0453 4.9329 40 1 2.2714 0.8909 4.8570 41 1 3.4467 -0.8225 6.1513 42 1 2.0039 -1.8648 6.1388 43 1 1.7634 2.0436 7.1437 44 1 3.3992 1.3310 6.9558 45 1 1.7918 1.7594 9.5373 46 1 3.5207 2.1300 9.2242 47 1 4.1353 -0.1945 9.2148 48 1 2.8784 -0.1726 10.4880 49 1 3.9045 -2.7343 11.3191 50 1 3.3557 0.7534 -2.1224 51 1 2.3186 -3.1257 -3.3626 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731757011.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:25 Heat of formation + Delta-G solvation = 1.932709 kcal Electronic energy + Delta-G solvation = -28763.382705 eV Core-core repulsion = 24890.564536 eV Total energy + Delta-G solvation = -3872.818169 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.13553 -40.92765 -39.46984 -36.74691 -36.44090 -34.66552 -33.59828 -33.29152 -31.24459 -29.91224 -29.23968 -28.19733 -26.67645 -25.89173 -24.51133 -22.86093 -22.55898 -21.93372 -21.85658 -20.92529 -20.53396 -19.13616 -18.67504 -17.63922 -17.05701 -16.97724 -16.71221 -16.09175 -15.87969 -15.64993 -15.63112 -15.13694 -14.97749 -14.92542 -14.42916 -14.35874 -13.97953 -13.68579 -13.60459 -13.53267 -13.32816 -13.10078 -13.03311 -13.00709 -12.74927 -12.67371 -12.53220 -12.24789 -12.20367 -12.04564 -11.82458 -11.66684 -11.51547 -11.30462 -11.15417 -11.05680 -10.92727 -10.76933 -10.64934 -10.13840 -9.34394 -8.78637 -7.84414 -5.19965 1.06452 1.43218 1.45932 1.51898 1.55532 2.08454 2.25844 2.32387 2.49601 3.33139 3.43566 3.67577 3.73236 3.86535 3.91504 3.95624 4.01526 4.05765 4.17807 4.26710 4.36190 4.43902 4.49969 4.61712 4.62828 4.68184 4.71229 4.79104 4.83121 4.85647 4.86979 4.94404 5.00025 5.05027 5.14559 5.16855 5.18227 5.25190 5.34155 5.36705 5.40528 5.50670 5.52970 5.69411 5.71615 5.77452 5.81307 6.28159 6.47928 6.54845 7.11968 7.13087 7.20143 7.83492 8.49950 9.26198 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017072 B = 0.002137 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.761455 B =13098.868048 C =14167.211847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.003 3.997 3 C -0.140 4.140 4 C 0.514 3.486 5 O -0.584 6.584 6 N -0.707 5.707 7 C 0.126 3.874 8 C -0.107 4.107 9 C -0.113 4.113 10 C 0.152 3.848 11 H 0.037 0.963 12 C -0.111 4.111 13 C -0.138 4.138 14 C 0.172 3.828 15 N -0.620 5.620 16 C -0.230 4.230 17 H 0.077 0.923 18 C -0.068 4.068 19 N -0.950 5.950 20 Si 0.970 3.030 21 H -0.281 1.281 22 H -0.296 1.296 23 H -0.276 1.276 24 C -0.001 4.001 25 C -0.041 4.041 26 N -0.536 5.536 27 C 0.183 3.817 28 N -0.551 5.551 29 H 0.426 0.574 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.418 0.582 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.038 0.962 42 H 0.035 0.965 43 H 0.099 0.901 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.080 0.920 47 H -0.012 1.012 48 H 0.033 0.967 49 H 0.245 0.755 50 H 0.178 0.822 51 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.085 11.141 -23.823 27.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.002 4.002 3 C -0.197 4.197 4 C 0.300 3.700 5 O -0.464 6.464 6 N -0.359 5.359 7 C 0.002 3.998 8 C -0.145 4.145 9 C -0.153 4.153 10 C 0.046 3.954 11 H 0.055 0.945 12 C -0.148 4.148 13 C -0.176 4.176 14 C 0.047 3.953 15 N -0.344 5.344 16 C -0.360 4.360 17 H 0.094 0.906 18 C -0.260 4.260 19 N -0.600 5.600 20 Si 0.799 3.201 21 H -0.207 1.207 22 H -0.222 1.222 23 H -0.201 1.201 24 C -0.118 4.118 25 C -0.189 4.189 26 N -0.255 5.255 27 C -0.101 4.101 28 N -0.153 5.153 29 H 0.265 0.735 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.256 0.744 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.117 0.883 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.098 0.902 47 H 0.006 0.994 48 H 0.051 0.949 49 H 0.054 0.946 50 H 0.195 0.805 51 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -8.055 10.354 -24.429 27.728 hybrid contribution -0.504 -1.818 1.682 2.527 sum -8.558 8.536 -22.747 25.759 Atomic orbital electron populations 1.21940 0.89524 1.02921 1.05276 1.19290 0.98451 0.96488 0.85981 1.21941 1.01800 0.90488 1.05488 1.21063 0.78851 0.84586 0.85483 1.90720 1.41928 1.26389 1.87352 1.45845 1.56661 1.28732 1.04664 1.21232 0.98491 0.95912 0.84211 1.21629 1.02337 0.99714 0.90828 1.21821 0.99500 0.99088 0.94874 1.21231 0.96594 0.91706 0.85884 0.94516 1.22585 1.01167 0.95472 0.95595 1.22884 1.01236 0.96472 0.97031 1.21244 0.91426 0.87776 0.94854 1.44864 1.57926 1.11549 1.20073 1.19270 1.13381 0.89200 1.14107 0.90556 1.25647 0.98384 1.01894 1.00125 1.70144 1.27700 1.37348 1.24767 0.85271 0.77458 0.80300 0.77073 1.20686 1.22227 1.20142 1.20791 1.04332 0.87405 0.99313 1.22347 1.01842 1.00980 0.93735 1.70245 1.23939 1.02143 1.29190 1.25579 0.94476 1.01015 0.88987 1.43183 1.36850 1.13979 1.21264 0.73517 0.88972 0.89478 0.93048 0.92376 0.88921 0.88787 0.74375 0.93366 0.93450 0.89739 0.88992 0.94264 0.94640 0.88260 0.91130 0.91756 0.90185 0.99417 0.94853 0.94559 0.80469 0.74589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.40 71.98 0.60 -0.53 16 2 C 0.00 0.03 0.85 -53.67 -0.05 -0.01 16 3 C -0.14 -1.18 7.30 71.98 0.53 -0.65 16 4 C 0.51 10.64 6.48 87.66 0.57 11.21 16 5 O -0.58 -18.20 15.91 -3.05 -0.05 -18.24 16 6 N -0.71 -11.73 5.37 -463.06 -2.49 -14.21 16 7 C 0.13 2.90 5.67 86.38 0.49 3.39 16 8 C -0.11 -2.26 5.10 30.59 0.16 -2.11 16 9 C -0.11 -3.76 4.71 30.59 0.14 -3.62 16 10 C 0.15 5.62 3.16 45.34 0.14 5.76 16 11 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 12 C -0.11 -3.23 5.68 31.78 0.18 -3.05 16 13 C -0.14 -4.80 7.09 31.99 0.23 -4.58 16 14 C 0.17 8.47 5.45 86.86 0.47 8.94 16 15 N -0.62 -31.05 3.13 -668.24 -2.09 -33.15 16 16 C -0.23 -12.80 9.73 84.03 0.82 -11.99 16 17 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 18 C -0.07 -3.89 5.47 84.86 0.46 -3.42 16 19 N -0.95 -57.98 10.50 21.65 0.23 -57.75 16 20 Si 0.97 46.40 29.55 68.60 2.03 48.43 16 21 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 C 0.00 -0.02 4.97 40.95 0.20 0.19 16 25 C -0.04 -0.88 10.87 83.52 0.91 0.03 16 26 N -0.54 -12.83 11.25 -200.32 -2.25 -15.09 16 27 C 0.18 3.29 13.04 180.26 2.35 5.64 16 28 N -0.55 -9.44 5.97 -186.50 -1.11 -10.55 16 29 H 0.43 5.71 8.96 -92.71 -0.83 4.88 16 30 H 0.09 0.40 7.86 -2.39 -0.02 0.38 16 31 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.66 7.76 -2.39 -0.02 0.64 16 34 H 0.09 0.52 8.11 -2.39 -0.02 0.50 16 35 H 0.09 0.35 7.33 -2.39 -0.02 0.33 16 36 H 0.42 3.73 7.36 -92.71 -0.68 3.05 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.09 1.54 7.62 -2.38 -0.02 1.52 16 41 H 0.04 1.45 8.04 -2.38 -0.02 1.43 16 42 H 0.03 1.37 7.86 -2.39 -0.02 1.35 16 43 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.07 1.96 7.79 -2.39 -0.02 1.94 16 45 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 47 H -0.01 -0.67 8.10 -2.39 -0.02 -0.69 16 48 H 0.03 1.87 6.78 -2.39 -0.02 1.85 16 49 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 50 H 0.18 3.07 7.30 -2.91 -0.02 3.05 16 51 H 0.24 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -81.70 405.31 1.88 -79.82 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -0.59 Total: 15.54 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 8.21 Total: 5.20 kcal Atomic # 7 Polarization: -123.03 SS G_CDS: -7.72 Total: -130.75 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.05 Total: -18.24 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -81.70 1.88 -79.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731757011.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.755 kcal (2) G-P(sol) polarization free energy of solvation -81.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds