Wall clock time and date at job start Tue Mar 31 2020 18:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47028 * 2 1 4 4 N 1.30503 * 125.65461 * 270.04089 * 3 2 1 5 5 C 1.34118 * 109.26033 * 179.97438 * 4 3 2 6 6 C 1.34680 * 108.02152 * 359.73004 * 5 4 3 7 7 N 1.35047 * 125.64850 * 90.00157 * 3 2 1 8 8 C 1.46494 * 126.39923 * 0.03400 * 7 3 2 9 9 H 1.09000 * 109.47161 * 359.97438 * 8 7 3 10 10 C 1.53003 * 109.47431 * 240.00189 * 8 7 3 11 11 C 1.53002 * 109.47496 * 120.00047 * 8 7 3 12 12 C 1.50697 * 109.47396 * 184.99992 * 11 8 7 13 13 O 1.21286 * 120.00030 * 0.02562 * 12 11 8 14 14 N 1.34781 * 120.00131 * 179.97438 * 12 11 8 15 15 C 1.46495 * 119.99876 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.46786 * 180.02562 * 15 14 12 17 17 H 1.08999 * 110.64092 * 303.31130 * 16 15 14 18 18 C 1.55159 * 110.87083 * 180.02562 * 16 15 14 19 19 C 1.54909 * 101.57990 * 206.06082 * 18 16 15 20 20 N 1.47743 * 104.83995 * 37.09908 * 19 18 16 21 21 C 1.36946 * 125.82120 * 155.82347 * 20 19 18 22 22 H 1.08000 * 119.99920 * 179.90231 * 21 20 19 23 23 C 1.38814 * 119.99867 * 359.91271 * 21 20 19 24 24 N 1.31617 * 119.99930 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99829 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47105 * 89.99400 * 25 23 21 27 27 H 1.48501 * 109.47179 * 209.99958 * 25 23 21 28 28 H 1.48502 * 109.47052 * 329.99719 * 25 23 21 29 29 C 1.47020 * 108.53125 * 335.74644 * 20 19 18 30 30 H 1.08992 * 109.47228 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46744 * 300.00348 * 1 2 3 32 32 H 1.09000 * 109.46939 * 59.99769 * 1 2 3 33 33 H 1.08996 * 109.47077 * 240.00530 * 2 1 3 34 34 H 1.08996 * 109.46911 * 119.99475 * 2 1 3 35 35 H 1.08002 * 125.99054 * 179.97438 * 5 4 3 36 36 H 1.07995 * 126.59146 * 180.28651 * 6 5 4 37 37 H 1.08996 * 109.47310 * 179.97438 * 10 8 7 38 38 H 1.09000 * 109.46632 * 299.99937 * 10 8 7 39 39 H 1.08999 * 109.46663 * 59.99479 * 10 8 7 40 40 H 1.08999 * 109.47016 * 64.99965 * 11 8 7 41 41 H 1.08998 * 109.47025 * 305.00215 * 11 8 7 42 42 H 0.97000 * 119.99395 * 0.02562 * 14 12 11 43 43 H 1.08999 * 109.47319 * 60.00182 * 15 14 12 44 44 H 1.09002 * 109.47336 * 299.99632 * 15 14 12 45 45 H 1.08994 * 111.00854 * 324.14128 * 18 16 15 46 46 H 1.09001 * 110.99961 * 87.95256 * 18 16 15 47 47 H 1.09003 * 110.36363 * 155.85234 * 19 18 16 48 48 H 1.09001 * 110.36855 * 278.17084 * 19 18 16 49 49 H 0.96998 * 119.99524 * 180.02562 * 24 23 21 50 50 H 1.09002 * 109.88367 * 241.68734 * 29 20 19 51 51 H 1.09000 * 109.88319 * 120.67352 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2852 2.1383 -1.0604 5 6 2.7138 3.3515 -0.6819 6 6 2.7214 3.3893 0.6644 7 7 2.2947 2.1629 1.0974 8 6 2.1449 1.7369 2.4910 9 1 1.7818 0.7096 2.5199 10 6 1.1432 2.6514 3.1990 11 6 3.4992 1.8198 3.1981 12 6 3.3718 1.2666 4.5941 13 8 2.3030 0.8468 4.9848 14 7 4.4456 1.2372 5.4080 15 6 4.3218 0.6989 6.7648 16 6 5.6761 0.7819 7.4719 17 1 6.4407 0.2553 6.9008 18 6 5.5820 0.2185 8.9145 19 6 6.7304 0.9807 9.6216 20 7 6.7064 2.3344 9.0303 21 6 7.1853 3.4746 9.6186 22 1 7.1208 4.4187 9.0982 23 6 7.7537 3.4167 10.8837 24 7 7.8320 2.2661 11.5179 25 14 8.4075 4.9718 11.6858 26 1 7.3252 5.6154 12.4730 27 1 9.5369 4.6271 12.5864 28 1 8.8803 5.9093 10.6356 29 6 6.0831 2.2528 7.7012 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 2.9987 4.1581 -1.3410 36 1 3.0107 4.2257 1.2833 37 1 1.0314 2.3342 4.2358 38 1 1.5059 3.6789 3.1701 39 1 0.1784 2.5924 2.6953 40 1 3.8202 2.8603 3.2476 41 1 4.2352 1.2385 2.6427 42 1 5.3004 1.5726 5.0953 43 1 4.0007 -0.3415 6.7151 44 1 3.5860 1.2802 7.3206 45 1 4.6188 0.4574 9.3652 46 1 5.7606 -0.8568 8.9263 47 1 6.5462 1.0336 10.6947 48 1 7.6861 0.4956 9.4234 49 1 8.2289 2.2258 12.4021 50 1 6.7962 2.5635 6.9376 51 1 5.2005 2.8914 7.6659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731852055.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:35 Heat of formation + Delta-G solvation = 35.521031 kcal Electronic energy + Delta-G solvation = -28648.000033 eV Core-core repulsion = 24776.638363 eV Total energy + Delta-G solvation = -3871.361670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.44939 -40.06656 -37.83635 -36.00378 -34.75186 -34.11240 -32.63390 -31.20207 -29.99653 -28.88960 -28.82799 -27.75759 -25.56192 -24.24430 -23.81843 -23.03981 -21.42304 -20.72832 -20.01950 -19.70603 -19.46945 -17.79699 -16.99618 -16.66895 -16.15739 -15.98407 -15.61853 -15.13646 -14.98128 -14.69084 -14.50543 -14.27517 -13.91447 -13.75063 -13.66397 -13.46138 -13.21635 -13.05127 -12.59519 -12.59346 -12.19940 -11.96666 -11.91097 -11.84368 -11.72363 -11.60957 -11.54740 -11.38348 -11.02100 -10.85094 -10.56002 -10.28167 -10.19058 -10.09037 -10.00885 -9.88418 -9.78032 -9.58109 -9.12627 -8.71689 -8.58457 -6.90332 -5.71900 -3.13640 1.80035 2.34547 2.41520 2.93596 3.13891 3.35535 3.40496 3.42456 4.05382 4.11941 4.30738 4.41323 4.44207 4.58464 4.72454 4.83407 4.92170 4.99412 5.03114 5.08255 5.09331 5.15987 5.28624 5.30985 5.33716 5.42781 5.45547 5.48140 5.54611 5.60037 5.68672 5.78310 5.83323 5.86800 5.96529 6.00398 6.12094 6.25170 6.30387 6.45967 6.50217 6.55228 6.62140 6.81114 6.95168 7.33636 7.43656 7.55708 7.78627 7.89912 8.01434 8.29361 9.15111 9.76368 10.41111 11.32442 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021026 B = 0.001993 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.341451 B =14046.491080 C =14838.969986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C 0.208 3.792 4 N -0.493 5.493 5 C -0.031 4.031 6 C -0.055 4.055 7 N -0.448 5.448 8 C 0.147 3.853 9 H 0.111 0.889 10 C -0.166 4.166 11 C -0.154 4.154 12 C 0.517 3.483 13 O -0.542 6.542 14 N -0.720 5.720 15 C 0.132 3.868 16 C -0.115 4.115 17 H 0.076 0.924 18 C -0.135 4.135 19 C 0.151 3.849 20 N -0.604 5.604 21 C -0.224 4.224 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.922 5.922 25 Si 0.915 3.085 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.282 1.282 29 C 0.141 3.859 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.168 0.832 36 H 0.172 0.828 37 H 0.099 0.901 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.403 0.597 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.107 0.893 48 H 0.013 0.987 49 H 0.253 0.747 50 H 0.017 0.983 51 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.597 -4.052 -20.414 23.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 C -0.054 4.054 4 N -0.211 5.211 5 C -0.179 4.179 6 C -0.188 4.188 7 N -0.131 5.131 8 C 0.044 3.956 9 H 0.129 0.871 10 C -0.223 4.223 11 C -0.195 4.195 12 C 0.302 3.698 13 O -0.420 6.420 14 N -0.371 5.371 15 C 0.009 3.991 16 C -0.135 4.135 17 H 0.094 0.906 18 C -0.174 4.174 19 C 0.026 3.974 20 N -0.331 5.331 21 C -0.352 4.352 22 H 0.095 0.905 23 C -0.207 4.207 24 N -0.570 5.570 25 Si 0.745 3.255 26 H -0.215 1.215 27 H -0.216 1.216 28 H -0.207 1.207 29 C 0.015 3.985 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.185 0.815 36 H 0.189 0.811 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.237 0.763 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.125 0.875 48 H 0.031 0.969 49 H 0.063 0.937 50 H 0.035 0.965 51 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -12.342 -4.575 -20.579 24.429 hybrid contribution 1.152 1.484 1.067 2.161 sum -11.190 -3.091 -19.512 22.704 Atomic orbital electron populations 1.21743 0.93877 1.02356 1.02536 1.19982 0.96540 0.87472 1.03977 1.23278 1.04098 0.96652 0.81372 1.70232 1.18299 1.04334 1.28277 1.22265 1.06590 0.96224 0.92784 1.22639 1.09440 0.89976 0.96757 1.45615 1.48859 1.11591 1.07061 1.21159 0.95406 1.01556 0.77467 0.87101 1.22284 0.98129 0.98872 1.03048 1.22009 0.98698 1.04419 0.94326 1.20165 0.84215 0.78804 0.86571 1.90694 1.27091 1.47727 1.76464 1.46080 1.12452 1.63498 1.15070 1.21486 0.98096 0.98807 0.80707 1.22452 0.94980 0.98591 0.97434 0.90585 1.22999 1.01683 0.99045 0.93663 1.21990 0.92137 0.82814 1.00440 1.44570 1.70023 1.04923 1.13538 1.19060 1.31728 0.86143 0.98313 0.90538 1.24799 1.01316 0.97246 0.97319 1.69787 1.50204 1.22721 1.14309 0.86068 0.78259 0.81977 0.79154 1.21539 1.21606 1.20746 1.21312 0.95410 0.92588 0.89173 0.91538 0.92734 0.91902 0.88729 0.90408 0.81487 0.81123 0.88278 0.92142 0.91959 0.87895 0.88124 0.76267 0.91510 0.91092 0.91810 0.92072 0.87512 0.96916 0.93668 0.96530 0.95894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.64 16 2 C -0.04 -0.31 6.08 -27.88 -0.17 -0.48 16 3 C 0.21 2.13 7.16 -155.41 -1.11 1.02 16 4 N -0.49 -5.96 11.25 -10.81 -0.12 -6.08 16 5 C -0.03 -0.31 11.87 -17.81 -0.21 -0.53 16 6 C -0.06 -0.49 10.70 -16.56 -0.18 -0.67 16 7 N -0.45 -4.08 2.61 -106.83 -0.28 -4.36 16 8 C 0.15 1.22 2.64 -67.93 -0.18 1.04 16 9 H 0.11 0.95 6.48 -51.93 -0.34 0.61 16 10 C -0.17 -1.43 8.99 37.16 0.33 -1.09 16 11 C -0.15 -1.19 5.19 -27.88 -0.14 -1.33 16 12 C 0.52 5.53 7.55 -10.99 -0.08 5.44 16 13 O -0.54 -7.40 13.97 5.55 0.08 -7.32 16 14 N -0.72 -7.77 5.40 -60.29 -0.33 -8.10 16 15 C 0.13 1.73 5.01 -4.04 -0.02 1.71 16 16 C -0.12 -1.77 3.01 -88.78 -0.27 -2.04 16 17 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 18 C -0.13 -2.37 6.54 -24.58 -0.16 -2.53 16 19 C 0.15 3.52 5.91 -2.35 -0.01 3.51 16 20 N -0.60 -14.96 3.41 -169.81 -0.58 -15.54 16 21 C -0.22 -6.12 10.28 -15.05 -0.15 -6.27 16 22 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 23 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 24 N -0.92 -26.40 10.11 55.49 0.56 -25.84 16 25 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 29 C 0.14 2.72 6.51 -3.06 -0.02 2.70 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.50 7.08 -51.93 -0.37 0.14 16 35 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.10 1.02 5.95 -51.93 -0.31 0.71 16 38 H 0.06 0.48 7.95 -51.93 -0.41 0.07 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.10 0.68 8.09 -51.93 -0.42 0.26 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.40 3.67 8.33 -40.82 -0.34 3.33 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 45 H 0.06 1.12 8.05 -51.93 -0.42 0.70 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.11 2.83 5.88 -51.93 -0.31 2.53 16 48 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 49 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 50 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.02 0.45 7.77 -51.93 -0.40 0.05 16 LS Contribution 405.86 15.07 6.12 6.12 Total: -1.00 -32.75 405.86 -10.45 -43.21 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -8.77 Total: 1.79 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -2.11 Total: -0.55 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -0.74 Total: -59.91 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: 0.08 Total: -7.32 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.75 -10.45 -43.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731852055.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.728 kcal (2) G-P(sol) polarization free energy of solvation -32.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds