Wall clock time and date at job start Tue Mar 31 2020 18:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47028 * 2 1 4 4 N 1.30503 * 125.65461 * 270.04089 * 3 2 1 5 5 C 1.34118 * 109.26033 * 179.97438 * 4 3 2 6 6 C 1.34680 * 108.02152 * 359.73004 * 5 4 3 7 7 N 1.35047 * 125.64850 * 90.00157 * 3 2 1 8 8 C 1.46494 * 126.39923 * 0.03400 * 7 3 2 9 9 H 1.09000 * 109.47161 * 359.97438 * 8 7 3 10 10 C 1.53003 * 109.47431 * 240.00189 * 8 7 3 11 11 C 1.53002 * 109.47496 * 120.00047 * 8 7 3 12 12 C 1.50697 * 109.47396 * 184.99992 * 11 8 7 13 13 O 1.21286 * 120.00030 * 0.02562 * 12 11 8 14 14 N 1.34781 * 120.00131 * 179.97438 * 12 11 8 15 15 C 1.46495 * 119.99876 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.46786 * 180.02562 * 15 14 12 17 17 H 1.08999 * 110.64092 * 303.31130 * 16 15 14 18 18 C 1.55159 * 110.87083 * 180.02562 * 16 15 14 19 19 C 1.54909 * 101.57990 * 206.06082 * 18 16 15 20 20 N 1.47743 * 104.83995 * 37.09908 * 19 18 16 21 21 C 1.36946 * 125.82120 * 155.82347 * 20 19 18 22 22 H 1.08000 * 119.99920 * 179.90231 * 21 20 19 23 23 C 1.38814 * 119.99867 * 359.91271 * 21 20 19 24 24 N 1.31617 * 119.99930 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99829 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47105 * 89.99400 * 25 23 21 27 27 H 1.48501 * 109.47179 * 209.99958 * 25 23 21 28 28 H 1.48502 * 109.47052 * 329.99719 * 25 23 21 29 29 C 1.47020 * 108.53125 * 335.74644 * 20 19 18 30 30 H 1.08992 * 109.47228 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46744 * 300.00348 * 1 2 3 32 32 H 1.09000 * 109.46939 * 59.99769 * 1 2 3 33 33 H 1.08996 * 109.47077 * 240.00530 * 2 1 3 34 34 H 1.08996 * 109.46911 * 119.99475 * 2 1 3 35 35 H 1.08002 * 125.99054 * 179.97438 * 5 4 3 36 36 H 1.07995 * 126.59146 * 180.28651 * 6 5 4 37 37 H 1.08996 * 109.47310 * 179.97438 * 10 8 7 38 38 H 1.09000 * 109.46632 * 299.99937 * 10 8 7 39 39 H 1.08999 * 109.46663 * 59.99479 * 10 8 7 40 40 H 1.08999 * 109.47016 * 64.99965 * 11 8 7 41 41 H 1.08998 * 109.47025 * 305.00215 * 11 8 7 42 42 H 0.97000 * 119.99395 * 0.02562 * 14 12 11 43 43 H 1.08999 * 109.47319 * 60.00182 * 15 14 12 44 44 H 1.09002 * 109.47336 * 299.99632 * 15 14 12 45 45 H 1.08994 * 111.00854 * 324.14128 * 18 16 15 46 46 H 1.09001 * 110.99961 * 87.95256 * 18 16 15 47 47 H 1.09003 * 110.36363 * 155.85234 * 19 18 16 48 48 H 1.09001 * 110.36855 * 278.17084 * 19 18 16 49 49 H 0.96998 * 119.99524 * 180.02562 * 24 23 21 50 50 H 1.09002 * 109.88367 * 241.68734 * 29 20 19 51 51 H 1.09000 * 109.88319 * 120.67352 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2852 2.1383 -1.0604 5 6 2.7138 3.3515 -0.6819 6 6 2.7214 3.3893 0.6644 7 7 2.2947 2.1629 1.0974 8 6 2.1449 1.7369 2.4910 9 1 1.7818 0.7096 2.5199 10 6 1.1432 2.6514 3.1990 11 6 3.4992 1.8198 3.1981 12 6 3.3718 1.2666 4.5941 13 8 2.3030 0.8468 4.9848 14 7 4.4456 1.2372 5.4080 15 6 4.3218 0.6989 6.7648 16 6 5.6761 0.7819 7.4719 17 1 6.4407 0.2553 6.9008 18 6 5.5820 0.2185 8.9145 19 6 6.7304 0.9807 9.6216 20 7 6.7064 2.3344 9.0303 21 6 7.1853 3.4746 9.6186 22 1 7.1208 4.4187 9.0982 23 6 7.7537 3.4167 10.8837 24 7 7.8320 2.2661 11.5179 25 14 8.4075 4.9718 11.6858 26 1 7.3252 5.6154 12.4730 27 1 9.5369 4.6271 12.5864 28 1 8.8803 5.9093 10.6356 29 6 6.0831 2.2528 7.7012 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 2.9987 4.1581 -1.3410 36 1 3.0107 4.2257 1.2833 37 1 1.0314 2.3342 4.2358 38 1 1.5059 3.6789 3.1701 39 1 0.1784 2.5924 2.6953 40 1 3.8202 2.8603 3.2476 41 1 4.2352 1.2385 2.6427 42 1 5.3004 1.5726 5.0953 43 1 4.0007 -0.3415 6.7151 44 1 3.5860 1.2802 7.3206 45 1 4.6188 0.4574 9.3652 46 1 5.7606 -0.8568 8.9263 47 1 6.5462 1.0336 10.6947 48 1 7.6861 0.4956 9.4234 49 1 8.2289 2.2258 12.4021 50 1 6.7962 2.5635 6.9376 51 1 5.2005 2.8914 7.6659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731852055.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:34 Heat of formation + Delta-G solvation = 16.245417 kcal Electronic energy + Delta-G solvation = -28648.835886 eV Core-core repulsion = 24776.638363 eV Total energy + Delta-G solvation = -3872.197523 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.14822 -40.96626 -39.30594 -36.81730 -35.93356 -34.69561 -34.32434 -32.09304 -31.50911 -30.12841 -29.53146 -28.83376 -27.19063 -25.28436 -24.75726 -23.90272 -22.34891 -21.96317 -21.34571 -20.89231 -20.19434 -18.91778 -18.44706 -17.64166 -17.09878 -16.92105 -16.72101 -16.38341 -16.03276 -15.77902 -15.55372 -15.16519 -15.03463 -14.70585 -14.39000 -14.32541 -14.27248 -14.08988 -13.91584 -13.54088 -13.40360 -13.22658 -13.14817 -12.89695 -12.78237 -12.64737 -12.52236 -12.50200 -12.21252 -12.02644 -11.95967 -11.89582 -11.81542 -11.57449 -11.36991 -11.06455 -10.80327 -10.74573 -10.56886 -10.07195 -9.27811 -8.87924 -7.78332 -5.21926 1.11174 1.46223 1.47657 1.56132 1.57221 1.65983 2.19891 2.31459 2.49091 3.31799 3.40303 3.50042 3.62004 3.66446 3.74481 3.84279 3.94217 3.99353 4.05734 4.11412 4.24801 4.36473 4.41129 4.46754 4.48935 4.51183 4.66138 4.68220 4.69632 4.72091 4.77548 4.83895 4.87179 4.92965 4.99396 5.06115 5.09038 5.14024 5.16737 5.28814 5.36727 5.42611 5.45801 5.49135 5.65988 5.82825 5.87672 6.26988 6.31539 6.51483 7.10467 7.18372 7.19957 7.78869 8.42520 9.23893 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021026 B = 0.001993 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.341451 B =14046.491080 C =14838.969986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C 0.197 3.803 4 N -0.529 5.529 5 C -0.054 4.054 6 C -0.050 4.050 7 N -0.446 5.446 8 C 0.151 3.849 9 H 0.109 0.891 10 C -0.160 4.160 11 C -0.143 4.143 12 C 0.520 3.480 13 O -0.572 6.572 14 N -0.716 5.716 15 C 0.145 3.855 16 C -0.094 4.094 17 H 0.095 0.905 18 C -0.122 4.122 19 C 0.150 3.850 20 N -0.629 5.629 21 C -0.237 4.237 22 H 0.080 0.920 23 C -0.070 4.070 24 N -0.949 5.949 25 Si 0.978 3.022 26 H -0.287 1.287 27 H -0.295 1.295 28 H -0.270 1.270 29 C 0.137 3.863 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.181 0.819 36 H 0.197 0.803 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.414 0.586 43 H 0.077 0.923 44 H 0.054 0.946 45 H 0.062 0.938 46 H 0.089 0.911 47 H 0.069 0.931 48 H -0.010 1.010 49 H 0.246 0.754 50 H 0.028 0.972 51 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.754 -3.888 -21.795 25.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 C -0.065 4.065 4 N -0.248 5.248 5 C -0.201 4.201 6 C -0.183 4.183 7 N -0.129 5.129 8 C 0.048 3.952 9 H 0.127 0.873 10 C -0.218 4.218 11 C -0.183 4.183 12 C 0.306 3.694 13 O -0.452 6.452 14 N -0.368 5.368 15 C 0.021 3.979 16 C -0.113 4.113 17 H 0.113 0.887 18 C -0.161 4.161 19 C 0.025 3.975 20 N -0.356 5.356 21 C -0.366 4.366 22 H 0.098 0.902 23 C -0.262 4.262 24 N -0.599 5.599 25 Si 0.807 3.193 26 H -0.214 1.214 27 H -0.221 1.221 28 H -0.194 1.194 29 C 0.012 3.988 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.198 0.802 36 H 0.214 0.786 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.139 0.861 41 H 0.134 0.866 42 H 0.250 0.750 43 H 0.095 0.905 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.107 0.893 47 H 0.087 0.913 48 H 0.008 0.992 49 H 0.056 0.944 50 H 0.046 0.954 51 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -12.500 -4.399 -22.005 25.687 hybrid contribution 1.177 1.449 1.460 2.370 sum -11.323 -2.950 -20.545 23.643 Atomic orbital electron populations 1.21700 0.93449 1.03223 1.01622 1.20090 0.96848 0.86374 1.04709 1.23703 1.03965 0.97495 0.81385 1.70204 1.19577 1.05477 1.29586 1.22637 1.07305 0.96282 0.93910 1.23040 1.08257 0.90350 0.96646 1.45649 1.48572 1.11606 1.07037 1.21126 0.95704 1.01359 0.77039 0.87319 1.22200 0.98274 0.99370 1.01945 1.21950 0.98654 1.05519 0.92216 1.20572 0.83431 0.78013 0.87346 1.90697 1.28250 1.49025 1.77227 1.45966 1.13201 1.63436 1.14150 1.21178 0.95885 0.99285 0.81543 1.22289 0.96789 0.95753 0.96510 0.88682 1.22832 0.99023 0.99970 0.94309 1.21789 0.93300 0.83286 0.99122 1.44901 1.70190 1.04671 1.15797 1.19440 1.31199 0.87352 0.98626 0.90167 1.25632 1.02330 1.00107 0.98134 1.70049 1.51131 1.24481 1.14218 0.85073 0.77281 0.78793 0.78161 1.21353 1.22123 1.19445 1.21506 0.95077 0.95305 0.86884 0.89789 0.93262 0.93114 0.88501 0.89111 0.80220 0.78595 0.89887 0.91280 0.92234 0.86123 0.86568 0.75019 0.90484 0.92749 0.91913 0.89289 0.91270 0.99169 0.94387 0.95391 0.95984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.89 71.98 0.71 -1.08 16 2 C -0.04 -0.57 6.08 29.85 0.18 -0.39 16 3 C 0.20 3.80 7.16 138.13 0.99 4.79 16 4 N -0.53 -12.43 11.25 -188.12 -2.12 -14.54 16 5 C -0.05 -1.05 11.87 83.53 0.99 -0.06 16 6 C -0.05 -0.78 10.70 83.09 0.89 0.11 16 7 N -0.45 -7.22 2.61 -491.89 -1.28 -8.50 16 8 C 0.15 2.16 2.64 44.99 0.12 2.28 16 9 H 0.11 1.64 6.48 -2.39 -0.02 1.62 16 10 C -0.16 -2.48 8.99 71.98 0.65 -1.83 16 11 C -0.14 -1.75 5.19 29.85 0.15 -1.59 16 12 C 0.52 9.69 7.55 87.66 0.66 10.35 16 13 O -0.57 -14.54 13.97 -3.05 -0.04 -14.58 16 14 N -0.72 -13.25 5.40 -463.05 -2.50 -15.75 16 15 C 0.15 3.42 5.01 86.38 0.43 3.85 16 16 C -0.09 -2.66 3.01 -9.60 -0.03 -2.69 16 17 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 18 C -0.12 -4.12 6.54 31.99 0.21 -3.91 16 19 C 0.15 7.10 5.91 86.79 0.51 7.61 16 20 N -0.63 -31.18 3.41 -691.16 -2.35 -33.53 16 21 C -0.24 -13.00 10.28 84.03 0.86 -12.14 16 22 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 23 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 24 N -0.95 -55.90 10.11 21.65 0.22 -55.68 16 25 Si 0.98 45.00 29.55 68.60 2.03 47.02 16 26 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 27 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 28 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 29 C 0.14 5.05 6.51 86.73 0.56 5.62 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.00 7.08 -2.39 -0.02 0.98 16 35 H 0.18 2.69 8.06 -2.91 -0.02 2.66 16 36 H 0.20 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.08 1.61 5.95 -2.39 -0.01 1.60 16 38 H 0.07 0.93 7.95 -2.39 -0.02 0.91 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.12 1.11 8.09 -2.39 -0.02 1.09 16 41 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.41 6.02 8.33 -92.71 -0.77 5.25 16 43 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.05 1.50 8.06 -2.39 -0.02 1.48 16 45 H 0.06 2.13 8.05 -2.39 -0.02 2.11 16 46 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 47 H 0.07 3.81 5.88 -2.39 -0.01 3.79 16 48 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 49 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 50 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.02 0.82 7.77 -2.39 -0.02 0.81 16 Total: -1.00 -72.65 405.86 2.45 -70.19 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.14 Total: 17.89 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 8.36 Total: 7.48 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -8.03 Total: -128.00 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.04 Total: -14.58 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -72.65 2.45 -70.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731852055.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.438 kcal (2) G-P(sol) polarization free energy of solvation -72.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds