Wall clock time and date at job start Tue Mar 31 2020 18:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47208 * 2 1 4 4 N 1.30496 * 125.65684 * 270.04645 * 3 2 1 5 5 C 1.34125 * 109.26136 * 179.97438 * 4 3 2 6 6 C 1.34667 * 108.01907 * 359.72766 * 5 4 3 7 7 N 1.35053 * 125.64800 * 90.00544 * 3 2 1 8 8 C 1.46498 * 126.39426 * 0.03034 * 7 3 2 9 9 H 1.08995 * 109.47142 * 0.02562 * 8 7 3 10 10 C 1.53003 * 109.46552 * 120.00324 * 8 7 3 11 11 C 1.52991 * 109.47281 * 240.00124 * 8 7 3 12 12 C 1.50702 * 109.47555 * 175.00446 * 11 8 7 13 13 O 1.21287 * 119.99234 * 0.02562 * 12 11 8 14 14 N 1.34776 * 120.00539 * 180.02562 * 12 11 8 15 15 C 1.46494 * 119.99924 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.47093 * 180.02562 * 15 14 12 17 17 H 1.08997 * 110.77580 * 51.76189 * 16 15 14 18 18 C 1.55154 * 110.72254 * 174.99951 * 16 15 14 19 19 C 1.54908 * 101.58289 * 153.86462 * 18 16 15 20 20 N 1.47425 * 104.92961 * 322.93718 * 19 18 16 21 21 C 1.36938 * 125.65179 * 204.15650 * 20 19 18 22 22 H 1.07995 * 120.00281 * 180.02562 * 21 20 19 23 23 C 1.38810 * 119.99650 * 0.02562 * 21 20 19 24 24 N 1.31621 * 120.00025 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00113 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47166 * 59.99694 * 25 23 21 27 27 H 1.48493 * 109.47565 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47135 * 300.00010 * 25 23 21 29 29 C 1.47290 * 108.55742 * 24.15407 * 20 19 18 30 30 H 1.08999 * 109.47120 * 59.99524 * 1 2 3 31 31 H 1.08997 * 109.47415 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46972 * 299.99291 * 1 2 3 33 33 H 1.09004 * 109.46972 * 240.00709 * 2 1 3 34 34 H 1.08999 * 109.47120 * 120.00476 * 2 1 3 35 35 H 1.07999 * 125.98787 * 179.97438 * 5 4 3 36 36 H 1.08002 * 126.59072 * 180.28244 * 6 5 4 37 37 H 1.08991 * 109.47581 * 300.00110 * 10 8 7 38 38 H 1.09005 * 109.47115 * 60.00407 * 10 8 7 39 39 H 1.09001 * 109.46966 * 179.97438 * 10 8 7 40 40 H 1.09004 * 109.47493 * 55.00468 * 11 8 7 41 41 H 1.09003 * 109.47569 * 295.00707 * 11 8 7 42 42 H 0.96994 * 119.99369 * 359.97438 * 14 12 11 43 43 H 1.09000 * 109.47310 * 60.00424 * 15 14 12 44 44 H 1.09004 * 109.47167 * 299.99783 * 15 14 12 45 45 H 1.09008 * 111.00345 * 35.78931 * 18 16 15 46 46 H 1.09000 * 111.03743 * 271.95898 * 18 16 15 47 47 H 1.09002 * 110.36632 * 81.83114 * 19 18 16 48 48 H 1.08995 * 110.36781 * 204.04351 * 19 18 16 49 49 H 0.97001 * 119.99611 * 180.02562 * 24 23 21 50 50 H 1.09004 * 109.85762 * 239.50064 * 29 20 19 51 51 H 1.08995 * 110.00297 * 118.43011 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2851 2.1382 -1.0603 5 6 2.7138 3.3515 -0.6817 6 6 2.7214 3.3892 0.6644 7 7 2.2948 2.1628 1.0975 8 6 2.1449 1.7367 2.4911 9 1 1.7826 0.7092 2.5199 10 6 3.4993 1.8195 3.1980 11 6 1.1434 2.6512 3.1991 12 6 0.8962 2.1402 4.5951 13 8 1.4657 1.1429 4.9854 14 7 0.0425 2.7912 5.4099 15 6 -0.1980 2.2941 6.7667 16 6 -1.2006 3.2079 7.4744 17 1 -2.0931 3.3483 6.8647 18 6 -1.5725 2.6390 8.8692 19 6 -1.9729 3.9256 9.6332 20 7 -1.0404 4.9601 9.1500 21 6 -0.6870 6.0959 9.8285 22 1 0.0070 6.7953 9.3862 23 6 -1.2208 6.3482 11.0847 24 7 -2.0662 5.4956 11.6240 25 14 -0.7393 7.8979 12.0101 26 1 -1.1218 9.0902 11.2117 27 1 -1.4422 7.9322 13.3177 28 1 0.7284 7.9036 12.2362 29 6 -0.5538 4.5667 7.8167 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5137 0.8901 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.9987 4.1581 -1.3409 36 1 3.0109 4.2256 1.2833 37 1 4.2129 1.1681 2.6936 38 1 3.8620 2.8471 3.1692 39 1 3.3878 1.5029 4.2350 40 1 0.2051 2.6609 2.6444 41 1 1.5467 3.6626 3.2485 42 1 -0.4125 3.5889 5.0978 43 1 0.7400 2.2844 7.3218 44 1 -0.6013 1.2826 6.7169 45 1 -0.7131 2.1583 9.3369 46 1 -2.4131 1.9487 8.7987 47 1 -3.0009 4.2019 9.3983 48 1 -1.8557 3.7811 10.7072 49 1 -2.4394 5.6722 12.5017 50 1 0.5316 4.4669 7.8332 51 1 -0.8460 5.3129 7.0779 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731852057.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:41 Heat of formation + Delta-G solvation = 35.914265 kcal Electronic energy + Delta-G solvation = -28694.145986 eV Core-core repulsion = 24822.801368 eV Total energy + Delta-G solvation = -3871.344618 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.45478 -40.06915 -37.83243 -36.01031 -34.76263 -34.11716 -32.64078 -31.20615 -29.99173 -28.93217 -28.77686 -27.77068 -25.55246 -24.28441 -23.77790 -23.03982 -21.41409 -20.74057 -20.04965 -19.72707 -19.45252 -17.81774 -16.97091 -16.62167 -16.21843 -15.99473 -15.62330 -15.14573 -14.98470 -14.68639 -14.45036 -14.27008 -13.94916 -13.73926 -13.69016 -13.48129 -13.22431 -13.01423 -12.60139 -12.58086 -12.20470 -11.96760 -11.92297 -11.84353 -11.73057 -11.60512 -11.56700 -11.39392 -11.01806 -10.83794 -10.54070 -10.28979 -10.20256 -10.10056 -10.01591 -9.88514 -9.78338 -9.57044 -9.13166 -8.70585 -8.58966 -6.90197 -5.71009 -3.13165 1.79505 2.34205 2.41033 2.93368 3.12842 3.36247 3.40560 3.41942 4.04792 4.11395 4.30669 4.41264 4.44078 4.57570 4.72195 4.82701 4.91640 4.99567 5.02999 5.07561 5.08246 5.15379 5.27730 5.30182 5.31492 5.45957 5.46127 5.47487 5.54275 5.61379 5.67750 5.78324 5.82329 5.86616 5.96597 6.00407 6.11686 6.25924 6.29420 6.46661 6.50409 6.54764 6.62754 6.81281 6.94694 7.32943 7.44530 7.55824 7.79553 7.89480 8.00900 8.30449 9.16055 9.76801 10.41591 11.32770 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.020647 B = 0.002007 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.830152 B =13948.148910 C =14652.731673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C 0.208 3.792 4 N -0.493 5.493 5 C -0.031 4.031 6 C -0.055 4.055 7 N -0.448 5.448 8 C 0.147 3.853 9 H 0.111 0.889 10 C -0.166 4.166 11 C -0.153 4.153 12 C 0.517 3.483 13 O -0.541 6.541 14 N -0.721 5.721 15 C 0.132 3.868 16 C -0.115 4.115 17 H 0.076 0.924 18 C -0.135 4.135 19 C 0.151 3.849 20 N -0.604 5.604 21 C -0.225 4.225 22 H 0.076 0.924 23 C -0.011 4.011 24 N -0.922 5.922 25 Si 0.915 3.085 26 H -0.285 1.285 27 H -0.289 1.289 28 H -0.285 1.285 29 C 0.141 3.859 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.403 0.597 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.012 0.988 48 H 0.108 0.892 49 H 0.253 0.747 50 H 0.024 0.976 51 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.897 -9.563 -20.884 23.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 C -0.054 4.054 4 N -0.211 5.211 5 C -0.179 4.179 6 C -0.188 4.188 7 N -0.131 5.131 8 C 0.044 3.956 9 H 0.129 0.871 10 C -0.224 4.224 11 C -0.194 4.194 12 C 0.302 3.698 13 O -0.419 6.419 14 N -0.371 5.371 15 C 0.009 3.991 16 C -0.134 4.134 17 H 0.094 0.906 18 C -0.174 4.174 19 C 0.026 3.974 20 N -0.331 5.331 21 C -0.353 4.353 22 H 0.094 0.906 23 C -0.207 4.207 24 N -0.571 5.571 25 Si 0.746 3.254 26 H -0.212 1.212 27 H -0.215 1.215 28 H -0.211 1.211 29 C 0.015 3.985 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.185 0.815 36 H 0.189 0.811 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.237 0.763 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.030 0.970 48 H 0.125 0.875 49 H 0.064 0.936 50 H 0.041 0.959 51 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 6.159 -10.459 -21.034 24.285 hybrid contribution 0.065 1.851 1.115 2.162 sum 6.224 -8.608 -19.919 22.574 Atomic orbital electron populations 1.21742 0.93857 1.02405 1.02487 1.19986 0.96510 0.87488 1.04020 1.23277 1.04058 0.96675 0.81368 1.70233 1.18309 1.04321 1.28281 1.22263 1.06594 0.96222 0.92783 1.22634 1.09480 0.89947 0.96758 1.45620 1.48787 1.11669 1.07063 1.21156 0.97256 0.99712 0.77464 0.87097 1.22291 0.94355 1.02688 1.03068 1.22005 1.01511 1.01553 0.94325 1.20165 0.79162 0.83873 0.86565 1.90696 1.49080 1.25669 1.76489 1.46088 1.45368 1.30607 1.15061 1.21505 0.99532 0.97420 0.80663 1.22448 0.97378 0.96164 0.97436 0.90561 1.23007 1.00400 0.99874 0.94146 1.21941 0.91197 0.83453 1.00813 1.44550 1.51231 1.22944 1.14341 1.19016 1.21665 0.96643 0.97973 0.90601 1.24797 0.99309 0.98979 0.97566 1.69779 1.34120 1.35867 1.17303 0.86142 0.77852 0.82342 0.79086 1.21207 1.21514 1.21124 1.21375 0.96087 0.92200 0.88823 0.91827 0.91507 0.92876 0.88733 0.90349 0.81486 0.81130 0.91930 0.92141 0.88271 0.88159 0.87914 0.76306 0.91048 0.91489 0.91818 0.92092 0.97012 0.87468 0.93617 0.95861 0.96449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.04 -0.31 6.08 -27.89 -0.17 -0.48 16 3 C 0.21 2.13 7.16 -155.41 -1.11 1.02 16 4 N -0.49 -5.93 11.25 -10.82 -0.12 -6.05 16 5 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 6 C -0.06 -0.49 10.70 -16.56 -0.18 -0.67 16 7 N -0.45 -4.06 2.61 -106.84 -0.28 -4.34 16 8 C 0.15 1.22 2.64 -67.93 -0.18 1.04 16 9 H 0.11 0.94 6.48 -51.93 -0.34 0.61 16 10 C -0.17 -1.43 9.00 37.16 0.33 -1.09 16 11 C -0.15 -1.17 5.18 -27.89 -0.14 -1.31 16 12 C 0.52 5.48 7.55 -10.98 -0.08 5.40 16 13 O -0.54 -7.38 13.97 5.55 0.08 -7.31 16 14 N -0.72 -7.69 5.47 -60.29 -0.33 -8.02 16 15 C 0.13 1.73 5.02 -4.04 -0.02 1.71 16 16 C -0.11 -1.77 2.96 -88.78 -0.26 -2.03 16 17 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 18 C -0.13 -2.38 6.53 -24.58 -0.16 -2.54 16 19 C 0.15 3.53 5.89 -2.53 -0.01 3.51 16 20 N -0.60 -15.00 3.40 -169.86 -0.58 -15.58 16 21 C -0.22 -6.14 10.28 -15.06 -0.15 -6.30 16 22 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 23 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 24 N -0.92 -26.43 10.09 55.49 0.56 -25.87 16 25 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 C 0.14 2.72 6.77 -2.92 -0.02 2.70 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.51 7.08 -51.93 -0.37 0.14 16 35 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.47 7.96 -51.93 -0.41 0.06 16 39 H 0.10 1.02 5.95 -51.93 -0.31 0.71 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.67 8.08 -51.93 -0.42 0.25 16 42 H 0.40 3.57 8.47 -40.82 -0.35 3.23 16 43 H 0.07 1.05 7.93 -51.93 -0.41 0.64 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 1.12 8.05 -51.92 -0.42 0.70 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.11 2.85 5.86 -51.93 -0.30 2.55 16 49 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 50 H 0.02 0.46 7.68 -51.93 -0.40 0.06 16 51 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 406.01 15.07 6.12 6.12 Total: -1.00 -32.79 406.01 -10.45 -43.24 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -8.77 Total: 1.71 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.10 Total: -0.59 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -0.75 Total: -59.86 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.08 Total: -7.31 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.79 -10.45 -43.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731852057.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.153 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds