Wall clock time and date at job start Tue Mar 31 2020 18:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47208 * 2 1 4 4 N 1.30496 * 125.65684 * 270.04645 * 3 2 1 5 5 C 1.34125 * 109.26136 * 179.97438 * 4 3 2 6 6 C 1.34667 * 108.01907 * 359.72766 * 5 4 3 7 7 N 1.35053 * 125.64800 * 90.00544 * 3 2 1 8 8 C 1.46498 * 126.39426 * 0.03034 * 7 3 2 9 9 H 1.08995 * 109.47142 * 0.02562 * 8 7 3 10 10 C 1.53003 * 109.46552 * 120.00324 * 8 7 3 11 11 C 1.52991 * 109.47281 * 240.00124 * 8 7 3 12 12 C 1.50702 * 109.47555 * 175.00446 * 11 8 7 13 13 O 1.21287 * 119.99234 * 0.02562 * 12 11 8 14 14 N 1.34776 * 120.00539 * 180.02562 * 12 11 8 15 15 C 1.46494 * 119.99924 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.47093 * 180.02562 * 15 14 12 17 17 H 1.08997 * 110.77580 * 51.76189 * 16 15 14 18 18 C 1.55154 * 110.72254 * 174.99951 * 16 15 14 19 19 C 1.54908 * 101.58289 * 153.86462 * 18 16 15 20 20 N 1.47425 * 104.92961 * 322.93718 * 19 18 16 21 21 C 1.36938 * 125.65179 * 204.15650 * 20 19 18 22 22 H 1.07995 * 120.00281 * 180.02562 * 21 20 19 23 23 C 1.38810 * 119.99650 * 0.02562 * 21 20 19 24 24 N 1.31621 * 120.00025 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00113 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47166 * 59.99694 * 25 23 21 27 27 H 1.48493 * 109.47565 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47135 * 300.00010 * 25 23 21 29 29 C 1.47290 * 108.55742 * 24.15407 * 20 19 18 30 30 H 1.08999 * 109.47120 * 59.99524 * 1 2 3 31 31 H 1.08997 * 109.47415 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46972 * 299.99291 * 1 2 3 33 33 H 1.09004 * 109.46972 * 240.00709 * 2 1 3 34 34 H 1.08999 * 109.47120 * 120.00476 * 2 1 3 35 35 H 1.07999 * 125.98787 * 179.97438 * 5 4 3 36 36 H 1.08002 * 126.59072 * 180.28244 * 6 5 4 37 37 H 1.08991 * 109.47581 * 300.00110 * 10 8 7 38 38 H 1.09005 * 109.47115 * 60.00407 * 10 8 7 39 39 H 1.09001 * 109.46966 * 179.97438 * 10 8 7 40 40 H 1.09004 * 109.47493 * 55.00468 * 11 8 7 41 41 H 1.09003 * 109.47569 * 295.00707 * 11 8 7 42 42 H 0.96994 * 119.99369 * 359.97438 * 14 12 11 43 43 H 1.09000 * 109.47310 * 60.00424 * 15 14 12 44 44 H 1.09004 * 109.47167 * 299.99783 * 15 14 12 45 45 H 1.09008 * 111.00345 * 35.78931 * 18 16 15 46 46 H 1.09000 * 111.03743 * 271.95898 * 18 16 15 47 47 H 1.09002 * 110.36632 * 81.83114 * 19 18 16 48 48 H 1.08995 * 110.36781 * 204.04351 * 19 18 16 49 49 H 0.97001 * 119.99611 * 180.02562 * 24 23 21 50 50 H 1.09004 * 109.85762 * 239.50064 * 29 20 19 51 51 H 1.08995 * 110.00297 * 118.43011 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2851 2.1382 -1.0603 5 6 2.7138 3.3515 -0.6817 6 6 2.7214 3.3892 0.6644 7 7 2.2948 2.1628 1.0975 8 6 2.1449 1.7367 2.4911 9 1 1.7826 0.7092 2.5199 10 6 3.4993 1.8195 3.1980 11 6 1.1434 2.6512 3.1991 12 6 0.8962 2.1402 4.5951 13 8 1.4657 1.1429 4.9854 14 7 0.0425 2.7912 5.4099 15 6 -0.1980 2.2941 6.7667 16 6 -1.2006 3.2079 7.4744 17 1 -2.0931 3.3483 6.8647 18 6 -1.5725 2.6390 8.8692 19 6 -1.9729 3.9256 9.6332 20 7 -1.0404 4.9601 9.1500 21 6 -0.6870 6.0959 9.8285 22 1 0.0070 6.7953 9.3862 23 6 -1.2208 6.3482 11.0847 24 7 -2.0662 5.4956 11.6240 25 14 -0.7393 7.8979 12.0101 26 1 -1.1218 9.0902 11.2117 27 1 -1.4422 7.9322 13.3177 28 1 0.7284 7.9036 12.2362 29 6 -0.5538 4.5667 7.8167 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5137 0.8901 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.9987 4.1581 -1.3409 36 1 3.0109 4.2256 1.2833 37 1 4.2129 1.1681 2.6936 38 1 3.8620 2.8471 3.1692 39 1 3.3878 1.5029 4.2350 40 1 0.2051 2.6609 2.6444 41 1 1.5467 3.6626 3.2485 42 1 -0.4125 3.5889 5.0978 43 1 0.7400 2.2844 7.3218 44 1 -0.6013 1.2826 6.7169 45 1 -0.7131 2.1583 9.3369 46 1 -2.4131 1.9487 8.7987 47 1 -3.0009 4.2019 9.3983 48 1 -1.8557 3.7811 10.7072 49 1 -2.4394 5.6722 12.5017 50 1 0.5316 4.4669 7.8332 51 1 -0.8460 5.3129 7.0779 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731852057.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:39 Heat of formation + Delta-G solvation = 16.556897 kcal Electronic energy + Delta-G solvation = -28694.985385 eV Core-core repulsion = 24822.801368 eV Total energy + Delta-G solvation = -3872.184017 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.14903 -40.96365 -39.30700 -36.82027 -35.93906 -34.69387 -34.33182 -32.09254 -31.50251 -30.13241 -29.52522 -28.83960 -27.17897 -25.30924 -24.73637 -23.88506 -22.32883 -21.95745 -21.41026 -20.89151 -20.18529 -18.91894 -18.46542 -17.59315 -17.12279 -16.91288 -16.71989 -16.39281 -16.03090 -15.77903 -15.56482 -15.15972 -15.00658 -14.67469 -14.43159 -14.31753 -14.27107 -14.12229 -13.86823 -13.53618 -13.41217 -13.20311 -13.17211 -12.91212 -12.76262 -12.64673 -12.52632 -12.50139 -12.20188 -12.06142 -11.96077 -11.87429 -11.82056 -11.57894 -11.37537 -11.06452 -10.80030 -10.73381 -10.56916 -10.07372 -9.27776 -8.88147 -7.77683 -5.21804 1.11183 1.46200 1.48850 1.55325 1.57187 1.66168 2.20238 2.30911 2.49223 3.31731 3.40130 3.49878 3.62031 3.66696 3.74577 3.83609 3.93796 3.99137 4.06239 4.11838 4.24875 4.36654 4.41780 4.46571 4.48583 4.51270 4.66050 4.67496 4.68503 4.71589 4.80010 4.85147 4.87419 4.92738 4.99957 5.06060 5.09171 5.13845 5.16548 5.29645 5.35844 5.42940 5.45697 5.49444 5.66500 5.83218 5.87769 6.26932 6.32152 6.51614 7.10981 7.18446 7.20110 7.79131 8.42590 9.23796 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.020647 B = 0.002007 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.830152 B =13948.148910 C =14652.731673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C 0.197 3.803 4 N -0.529 5.529 5 C -0.054 4.054 6 C -0.050 4.050 7 N -0.446 5.446 8 C 0.151 3.849 9 H 0.109 0.891 10 C -0.161 4.161 11 C -0.142 4.142 12 C 0.520 3.480 13 O -0.572 6.572 14 N -0.716 5.716 15 C 0.145 3.855 16 C -0.094 4.094 17 H 0.096 0.904 18 C -0.123 4.123 19 C 0.150 3.850 20 N -0.629 5.629 21 C -0.239 4.239 22 H 0.080 0.920 23 C -0.069 4.069 24 N -0.949 5.949 25 Si 0.979 3.021 26 H -0.278 1.278 27 H -0.294 1.294 28 H -0.278 1.278 29 C 0.137 3.863 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.181 0.819 36 H 0.197 0.803 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.414 0.586 43 H 0.054 0.946 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.088 0.912 47 H -0.011 1.011 48 H 0.070 0.930 49 H 0.247 0.753 50 H 0.022 0.978 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.218 -9.458 -22.223 24.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.081 4.081 3 C -0.065 4.065 4 N -0.249 5.249 5 C -0.201 4.201 6 C -0.183 4.183 7 N -0.129 5.129 8 C 0.048 3.952 9 H 0.127 0.873 10 C -0.219 4.219 11 C -0.183 4.183 12 C 0.306 3.694 13 O -0.452 6.452 14 N -0.367 5.367 15 C 0.021 3.979 16 C -0.113 4.113 17 H 0.114 0.886 18 C -0.162 4.162 19 C 0.025 3.975 20 N -0.356 5.356 21 C -0.368 4.368 22 H 0.098 0.902 23 C -0.261 4.261 24 N -0.599 5.599 25 Si 0.807 3.193 26 H -0.204 1.204 27 H -0.220 1.220 28 H -0.204 1.204 29 C 0.012 3.988 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.198 0.802 36 H 0.214 0.786 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.250 0.750 43 H 0.073 0.927 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.107 0.893 47 H 0.007 0.993 48 H 0.088 0.912 49 H 0.056 0.944 50 H 0.040 0.960 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 6.489 -10.343 -22.417 25.527 hybrid contribution -0.002 1.819 1.494 2.354 sum 6.487 -8.524 -20.924 23.506 Atomic orbital electron populations 1.21698 0.93231 1.03233 1.01774 1.20089 0.96986 0.86380 1.04607 1.23694 1.03958 0.97493 0.81390 1.70204 1.19594 1.05467 1.29589 1.22636 1.07309 0.96279 0.93919 1.23040 1.08262 0.90324 0.96644 1.45654 1.48516 1.11677 1.07031 1.21123 0.97214 0.99857 0.77041 0.87344 1.22209 0.94590 1.03118 1.01959 1.21945 1.02135 1.01993 0.92198 1.20570 0.78244 0.83206 0.87338 1.90698 1.50132 1.27120 1.77259 1.45966 1.45607 1.31062 1.14094 1.21184 0.97942 0.97222 0.81545 1.22283 0.98365 0.94022 0.96608 0.88593 1.22840 1.01364 0.97425 0.94538 1.21738 0.90122 0.86038 0.99610 1.44884 1.51509 1.22684 1.16500 1.19404 1.21341 0.97633 0.98411 0.90221 1.25633 0.99840 1.02025 0.98640 1.70047 1.35261 1.37376 1.17196 0.85143 0.77611 0.79090 0.77437 1.20379 1.22040 1.20373 1.21570 0.96112 0.94532 0.86571 0.92997 0.89928 0.93019 0.88632 0.89251 0.80214 0.78562 0.92185 0.91243 0.89891 0.86661 0.86081 0.74986 0.92728 0.90551 0.91914 0.89307 0.99301 0.91225 0.94367 0.96006 0.95343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.89 71.98 0.71 -1.00 16 2 C -0.04 -0.58 6.08 29.85 0.18 -0.40 16 3 C 0.20 3.79 7.16 138.13 0.99 4.77 16 4 N -0.53 -12.38 11.25 -188.13 -2.12 -14.50 16 5 C -0.05 -1.04 11.87 83.52 0.99 -0.05 16 6 C -0.05 -0.77 10.70 83.09 0.89 0.12 16 7 N -0.45 -7.17 2.61 -491.93 -1.28 -8.45 16 8 C 0.15 2.14 2.64 44.99 0.12 2.26 16 9 H 0.11 1.63 6.48 -2.39 -0.02 1.61 16 10 C -0.16 -2.47 9.00 71.98 0.65 -1.82 16 11 C -0.14 -1.72 5.18 29.85 0.15 -1.57 16 12 C 0.52 9.62 7.55 87.66 0.66 10.28 16 13 O -0.57 -14.53 13.97 -3.05 -0.04 -14.57 16 14 N -0.72 -13.07 5.47 -463.05 -2.53 -15.61 16 15 C 0.15 3.42 5.02 86.38 0.43 3.85 16 16 C -0.09 -2.64 2.96 -9.60 -0.03 -2.67 16 17 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 18 C -0.12 -4.14 6.53 31.98 0.21 -3.93 16 19 C 0.15 7.11 5.89 86.85 0.51 7.62 16 20 N -0.63 -31.29 3.40 -691.31 -2.35 -33.64 16 21 C -0.24 -13.14 10.28 84.03 0.86 -12.27 16 22 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 23 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 24 N -0.95 -55.94 10.09 21.65 0.22 -55.72 16 25 Si 0.98 45.01 29.55 68.60 2.03 47.04 16 26 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 27 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 28 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 29 C 0.14 5.07 6.77 86.68 0.59 5.66 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.02 7.08 -2.39 -0.02 1.00 16 35 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.20 1.82 8.06 -2.91 -0.02 1.80 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 0.92 7.96 -2.38 -0.02 0.90 16 39 H 0.08 1.60 5.95 -2.39 -0.01 1.59 16 40 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.12 1.08 8.08 -2.39 -0.02 1.06 16 42 H 0.41 5.83 8.47 -92.71 -0.79 5.05 16 43 H 0.05 1.51 7.93 -2.39 -0.02 1.49 16 44 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 45 H 0.06 2.13 8.05 -2.38 -0.02 2.11 16 46 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 47 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 48 H 0.07 3.84 5.86 -2.39 -0.01 3.83 16 49 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 50 H 0.02 0.82 7.68 -2.38 -0.02 0.80 16 51 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -72.79 406.01 2.43 -70.36 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.13 Total: 17.63 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 8.39 Total: 7.46 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -8.07 Total: -127.92 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.04 Total: -14.57 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -72.79 2.43 -70.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731852057.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.916 kcal (2) G-P(sol) polarization free energy of solvation -72.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds