Wall clock time and date at job start Tue Mar 31 2020 18:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50708 * 109.47405 * 2 1 4 4 C 1.34663 * 126.59361 * 84.96937 * 3 2 1 5 5 N 1.34120 * 108.02403 * 180.02562 * 4 3 2 6 6 C 1.30504 * 109.25474 * 359.97438 * 5 4 3 7 7 C 1.50704 * 125.64940 * 179.73737 * 6 5 4 8 8 C 1.50699 * 109.47123 * 305.02586 * 7 6 5 9 9 O 1.21287 * 119.99864 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99963 * 180.02562 * 8 7 6 11 11 C 1.46924 * 120.63258 * 359.71872 * 10 8 7 12 12 C 1.53620 * 108.54357 * 126.36575 * 11 10 8 13 13 C 1.53045 * 109.24048 * 54.86017 * 12 11 10 14 14 C 1.53032 * 109.53789 * 298.51142 * 13 12 11 15 15 H 1.09005 * 109.49766 * 301.41376 * 14 13 12 16 16 C 1.53008 * 109.50018 * 181.31611 * 14 13 12 17 17 C 1.52998 * 109.47227 * 175.15971 * 16 14 13 18 18 N 1.46502 * 109.46951 * 180.02562 * 17 16 14 19 19 C 1.36935 * 119.99770 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00370 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99882 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00057 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99900 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47231 * 89.99622 * 23 21 19 25 25 H 1.48502 * 109.47048 * 209.99967 * 23 21 19 26 26 H 1.48503 * 109.47140 * 329.99419 * 23 21 19 27 27 C 1.46929 * 120.63091 * 180.02562 * 10 8 7 28 28 N 1.35042 * 108.69855 * 0.02562 * 6 5 4 29 29 H 0.96999 * 126.39641 * 179.97438 * 28 6 5 30 30 H 1.08996 * 109.47534 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47614 * 300.00345 * 1 2 3 32 32 H 1.09007 * 109.46891 * 60.00141 * 1 2 3 33 33 H 1.09001 * 109.47614 * 239.99655 * 2 1 3 34 34 H 1.08996 * 109.47321 * 119.99694 * 2 1 3 35 35 H 1.08009 * 125.98602 * 0.04893 * 4 3 2 36 36 H 1.08994 * 109.47064 * 65.02789 * 7 6 5 37 37 H 1.09001 * 109.46970 * 185.02388 * 7 6 5 38 38 H 1.08993 * 109.59126 * 246.20455 * 11 10 8 39 39 H 1.09005 * 109.58199 * 6.62773 * 11 10 8 40 40 H 1.08994 * 109.64025 * 294.86865 * 12 11 10 41 41 H 1.08999 * 109.43134 * 174.72721 * 12 11 10 42 42 H 1.08995 * 109.45989 * 178.48698 * 13 12 11 43 43 H 1.09001 * 109.44694 * 58.52255 * 13 12 11 44 44 H 1.09000 * 109.46812 * 295.16329 * 16 14 13 45 45 H 1.08997 * 109.46780 * 55.16283 * 16 14 13 46 46 H 1.09000 * 109.46795 * 300.00116 * 17 16 14 47 47 H 1.08999 * 109.47166 * 59.99936 * 17 16 14 48 48 H 0.96999 * 119.99743 * 359.97438 * 18 17 16 49 49 H 0.96999 * 119.99678 * 180.02562 * 22 21 19 50 50 H 1.09001 * 109.58567 * 353.36567 * 27 10 8 51 51 H 1.08994 * 109.59079 * 113.79827 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2106 2.2093 1.0770 5 7 2.6692 3.3957 0.6515 6 6 2.7825 3.3722 -0.6484 7 6 3.2599 4.5133 -1.5092 8 6 2.4226 5.7354 -1.2330 9 8 1.5266 5.6849 -0.4170 10 7 2.6693 6.8845 -1.8926 11 6 3.7550 6.9630 -2.8794 12 6 3.1769 7.4921 -4.2007 13 6 2.4650 8.8221 -3.9430 14 6 1.3083 8.6025 -2.9654 15 1 0.6150 7.8710 -3.3805 16 6 0.5770 9.9264 -2.7338 17 6 -0.6502 9.6838 -1.8528 18 7 -1.3507 10.9513 -1.6316 19 6 -2.4868 10.9813 -0.8677 20 1 -2.8662 10.0708 -0.4279 21 6 -3.1503 12.1824 -0.6576 22 7 -4.2420 12.2114 0.0770 23 14 -2.4939 13.7574 -1.4177 24 1 -3.0952 13.9463 -2.7623 25 1 -2.8475 14.9102 -0.5508 26 1 -1.0169 13.6680 -1.5440 27 6 1.8619 8.0845 -1.6337 28 7 2.3950 2.1580 -1.0949 29 1 2.3769 1.8634 -2.0188 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0183 1.9343 2.1037 36 1 4.3036 4.7287 -1.2808 37 1 3.1670 4.2392 -2.5601 38 1 4.5286 7.6406 -2.5185 39 1 4.1790 5.9710 -3.0357 40 1 2.4660 6.7712 -4.6043 41 1 3.9859 7.6449 -4.9150 42 1 2.0766 9.2142 -4.8829 43 1 3.1708 9.5348 -3.5163 44 1 1.2466 10.6295 -2.2385 45 1 0.2606 10.3390 -3.6917 46 1 -1.3197 8.9805 -2.3481 47 1 -0.3338 9.2710 -0.8948 48 1 -1.0098 11.7691 -2.0263 49 1 -4.7058 13.0506 0.2235 50 1 1.0364 7.8328 -0.9679 51 1 2.4845 8.8516 -1.1734 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732274718.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:35 Heat of formation + Delta-G solvation = 18.515959 kcal Electronic energy + Delta-G solvation = -28616.079302 eV Core-core repulsion = 24743.980237 eV Total energy + Delta-G solvation = -3872.099065 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 3.91 seconds Orbital eigenvalues (eV) -42.34304 -40.25554 -37.83976 -35.47717 -34.50171 -33.62194 -32.65559 -32.17035 -31.59686 -30.81555 -28.04748 -27.26576 -25.34404 -24.20357 -23.61740 -22.34126 -21.42922 -21.06554 -20.83782 -20.17454 -19.03831 -17.76426 -17.47121 -17.15371 -16.09601 -15.78237 -15.34699 -14.90922 -14.70113 -14.67039 -14.41492 -14.24043 -13.94445 -13.79951 -13.73810 -13.45720 -13.39110 -13.12511 -13.02095 -12.74513 -12.64109 -12.30644 -12.24712 -11.94560 -11.57018 -11.54897 -11.28714 -11.27403 -11.17947 -10.88494 -10.58362 -10.51643 -10.23058 -10.13911 -10.01565 -9.97252 -9.79501 -9.51528 -8.81755 -8.69391 -8.41733 -7.15248 -5.69467 -3.04652 1.74632 2.56465 2.61113 2.92700 3.14260 3.41704 3.43985 3.49139 4.02496 4.33667 4.44374 4.50445 4.57894 4.60908 4.65118 4.67010 4.72643 4.90360 4.92622 4.96855 5.04610 5.14198 5.19082 5.24284 5.37768 5.39786 5.47240 5.48108 5.55934 5.57116 5.57931 5.62628 5.71714 5.82586 5.84770 5.89882 5.97513 6.04788 6.05925 6.16059 6.25268 6.33583 6.47528 6.58960 6.83639 6.86402 7.09851 7.30684 7.97192 8.08309 8.14842 8.49772 9.29202 10.01319 10.21515 11.49236 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012020 B = 0.002387 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.891462 B =11726.309163 C =13492.036130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.045 4.045 3 C -0.024 4.024 4 C -0.019 4.019 5 N -0.455 5.455 6 C 0.215 3.785 7 C -0.051 4.051 8 C 0.516 3.484 9 O -0.506 6.506 10 N -0.615 5.615 11 C 0.105 3.895 12 C -0.134 4.134 13 C -0.116 4.116 14 C -0.095 4.095 15 H 0.074 0.926 16 C -0.123 4.123 17 C 0.154 3.846 18 N -0.757 5.757 19 C -0.241 4.241 20 H 0.090 0.910 21 C 0.001 3.999 22 N -0.936 5.936 23 Si 0.886 3.114 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.277 1.277 27 C 0.116 3.884 28 N -0.563 5.563 29 H 0.414 0.586 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.168 0.832 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.025 0.975 47 H 0.029 0.971 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.101 0.899 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.480 -23.779 -10.113 34.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.084 4.084 3 C -0.139 4.139 4 C -0.168 4.168 5 N -0.174 5.174 6 C -0.048 4.048 7 C -0.093 4.093 8 C 0.301 3.699 9 O -0.379 6.379 10 N -0.350 5.350 11 C -0.018 4.018 12 C -0.173 4.173 13 C -0.153 4.153 14 C -0.115 4.115 15 H 0.093 0.907 16 C -0.161 4.161 17 C 0.027 3.973 18 N -0.403 5.403 19 C -0.371 4.371 20 H 0.108 0.892 21 C -0.194 4.194 22 N -0.584 5.584 23 Si 0.716 3.284 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.204 1.204 27 C -0.006 4.006 28 N -0.167 5.167 29 H 0.252 0.748 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.185 0.815 36 H 0.135 0.865 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.043 0.957 47 H 0.047 0.953 48 H 0.192 0.808 49 H 0.069 0.931 50 H 0.119 0.881 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 21.983 -23.215 -8.930 33.195 hybrid contribution 0.157 0.465 -1.563 1.638 sum 22.140 -22.750 -10.493 33.434 Atomic orbital electron populations 1.21789 0.94274 1.01887 1.02788 1.19974 0.96182 0.88992 1.03208 1.21241 1.08748 0.96629 0.87290 1.22125 1.05950 0.90025 0.98722 1.70244 1.17260 1.21810 1.08046 1.22217 1.04881 0.86563 0.91182 1.19945 1.01262 0.89619 0.98485 1.20077 0.84767 0.83662 0.81375 1.90823 1.31097 1.83443 1.32510 1.48099 1.34390 1.11239 1.41236 1.21855 0.89364 1.01882 0.88675 1.21996 1.00518 0.98192 0.96552 1.21592 0.97437 0.96655 0.99648 1.21456 0.96712 0.98095 0.95233 0.90716 1.21782 0.97677 0.95844 1.00799 1.20695 0.91047 0.89211 0.96323 1.42723 1.30475 1.04559 1.62530 1.19103 0.99324 0.95975 1.22735 0.89225 1.24690 0.97357 0.97289 1.00087 1.69711 1.19483 1.25881 1.43324 0.86516 0.78397 0.84531 0.78911 1.21162 1.21756 1.20363 1.21811 0.95840 0.85456 0.97503 1.43053 1.51589 1.12500 1.09558 0.74823 0.92036 0.91837 0.92818 0.91433 0.89466 0.81469 0.86482 0.87776 0.91044 0.90137 0.91499 0.90797 0.91500 0.91645 0.91801 0.91632 0.95707 0.95288 0.80779 0.93132 0.88099 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.15 0.37 -0.59 16 2 C -0.04 -0.27 6.49 -27.88 -0.18 -0.45 16 3 C -0.02 -0.22 6.49 -81.60 -0.53 -0.75 16 4 C -0.02 -0.23 11.79 -17.82 -0.21 -0.44 16 5 N -0.46 -6.65 10.58 -10.81 -0.11 -6.77 16 6 C 0.22 2.44 6.96 -155.41 -1.08 1.36 16 7 C -0.05 -0.43 4.67 -29.03 -0.14 -0.57 16 8 C 0.52 6.60 7.69 -10.99 -0.08 6.51 16 9 O -0.51 -9.26 14.96 5.55 0.08 -9.18 16 10 N -0.61 -6.67 2.97 -172.48 -0.51 -7.18 16 11 C 0.11 0.70 6.37 -3.49 -0.02 0.68 16 12 C -0.13 -0.89 6.10 -26.39 -0.16 -1.05 16 13 C -0.12 -1.03 5.16 -26.69 -0.14 -1.17 16 14 C -0.10 -1.15 2.34 -90.48 -0.21 -1.37 16 15 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 16 C -0.12 -1.85 4.80 -26.73 -0.13 -1.98 16 17 C 0.15 3.14 6.02 -4.04 -0.02 3.12 16 18 N -0.76 -18.98 5.41 -59.91 -0.32 -19.31 16 19 C -0.24 -7.22 10.47 -15.06 -0.16 -7.37 16 20 H 0.09 2.89 8.06 -52.49 -0.42 2.46 16 21 C 0.00 0.03 5.50 -17.43 -0.10 -0.06 16 22 N -0.94 -30.52 13.97 55.49 0.78 -29.74 16 23 Si 0.89 22.80 27.74 -169.99 -4.71 18.09 16 24 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 26 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 27 C 0.12 1.52 5.32 -3.69 -0.02 1.50 16 28 N -0.56 -4.82 6.15 -6.54 -0.04 -4.86 16 29 H 0.41 2.06 8.96 -40.82 -0.37 1.69 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.17 1.70 8.06 -52.48 -0.42 1.27 16 36 H 0.12 0.73 7.93 -51.93 -0.41 0.32 16 37 H 0.10 0.48 7.70 -51.93 -0.40 0.08 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.31 5.93 -51.93 -0.31 0.01 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.03 0.62 6.70 -51.93 -0.35 0.27 16 48 H 0.36 8.66 5.53 -40.82 -0.23 8.43 16 49 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 50 H 0.10 1.68 5.72 -51.93 -0.30 1.38 16 51 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 403.62 15.07 6.08 6.08 Total: -1.00 -39.72 403.62 -10.29 -50.01 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -8.71 Total: 5.48 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -2.81 Total: -2.64 kcal Atomic # 7 Polarization: -67.64 SS G_CDS: -0.21 Total: -67.86 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.08 Total: -9.18 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.71 Total: 18.09 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -39.72 -10.29 -50.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732274718.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.531 kcal (2) G-P(sol) polarization free energy of solvation -39.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.91 seconds