Wall clock time and date at job start Tue Mar 31 2020 18:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50708 * 109.47405 * 2 1 4 4 C 1.34663 * 126.59361 * 84.96937 * 3 2 1 5 5 N 1.34120 * 108.02403 * 180.02562 * 4 3 2 6 6 C 1.30504 * 109.25474 * 359.97438 * 5 4 3 7 7 C 1.50704 * 125.64940 * 179.73737 * 6 5 4 8 8 C 1.50699 * 109.47123 * 305.02586 * 7 6 5 9 9 O 1.21287 * 119.99864 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99963 * 180.02562 * 8 7 6 11 11 C 1.46924 * 120.63258 * 359.71872 * 10 8 7 12 12 C 1.53620 * 108.54357 * 126.36575 * 11 10 8 13 13 C 1.53045 * 109.24048 * 54.86017 * 12 11 10 14 14 C 1.53032 * 109.53789 * 298.51142 * 13 12 11 15 15 H 1.09005 * 109.49766 * 301.41376 * 14 13 12 16 16 C 1.53008 * 109.50018 * 181.31611 * 14 13 12 17 17 C 1.52998 * 109.47227 * 175.15971 * 16 14 13 18 18 N 1.46502 * 109.46951 * 180.02562 * 17 16 14 19 19 C 1.36935 * 119.99770 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00370 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99882 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00057 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99900 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47231 * 89.99622 * 23 21 19 25 25 H 1.48502 * 109.47048 * 209.99967 * 23 21 19 26 26 H 1.48503 * 109.47140 * 329.99419 * 23 21 19 27 27 C 1.46929 * 120.63091 * 180.02562 * 10 8 7 28 28 N 1.35042 * 108.69855 * 0.02562 * 6 5 4 29 29 H 0.96999 * 126.39641 * 179.97438 * 28 6 5 30 30 H 1.08996 * 109.47534 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47614 * 300.00345 * 1 2 3 32 32 H 1.09007 * 109.46891 * 60.00141 * 1 2 3 33 33 H 1.09001 * 109.47614 * 239.99655 * 2 1 3 34 34 H 1.08996 * 109.47321 * 119.99694 * 2 1 3 35 35 H 1.08009 * 125.98602 * 0.04893 * 4 3 2 36 36 H 1.08994 * 109.47064 * 65.02789 * 7 6 5 37 37 H 1.09001 * 109.46970 * 185.02388 * 7 6 5 38 38 H 1.08993 * 109.59126 * 246.20455 * 11 10 8 39 39 H 1.09005 * 109.58199 * 6.62773 * 11 10 8 40 40 H 1.08994 * 109.64025 * 294.86865 * 12 11 10 41 41 H 1.08999 * 109.43134 * 174.72721 * 12 11 10 42 42 H 1.08995 * 109.45989 * 178.48698 * 13 12 11 43 43 H 1.09001 * 109.44694 * 58.52255 * 13 12 11 44 44 H 1.09000 * 109.46812 * 295.16329 * 16 14 13 45 45 H 1.08997 * 109.46780 * 55.16283 * 16 14 13 46 46 H 1.09000 * 109.46795 * 300.00116 * 17 16 14 47 47 H 1.08999 * 109.47166 * 59.99936 * 17 16 14 48 48 H 0.96999 * 119.99743 * 359.97438 * 18 17 16 49 49 H 0.96999 * 119.99678 * 180.02562 * 22 21 19 50 50 H 1.09001 * 109.58567 * 353.36567 * 27 10 8 51 51 H 1.08994 * 109.59079 * 113.79827 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2106 2.2093 1.0770 5 7 2.6692 3.3957 0.6515 6 6 2.7825 3.3722 -0.6484 7 6 3.2599 4.5133 -1.5092 8 6 2.4226 5.7354 -1.2330 9 8 1.5266 5.6849 -0.4170 10 7 2.6693 6.8845 -1.8926 11 6 3.7550 6.9630 -2.8794 12 6 3.1769 7.4921 -4.2007 13 6 2.4650 8.8221 -3.9430 14 6 1.3083 8.6025 -2.9654 15 1 0.6150 7.8710 -3.3805 16 6 0.5770 9.9264 -2.7338 17 6 -0.6502 9.6838 -1.8528 18 7 -1.3507 10.9513 -1.6316 19 6 -2.4868 10.9813 -0.8677 20 1 -2.8662 10.0708 -0.4279 21 6 -3.1503 12.1824 -0.6576 22 7 -4.2420 12.2114 0.0770 23 14 -2.4939 13.7574 -1.4177 24 1 -3.0952 13.9463 -2.7623 25 1 -2.8475 14.9102 -0.5508 26 1 -1.0169 13.6680 -1.5440 27 6 1.8619 8.0845 -1.6337 28 7 2.3950 2.1580 -1.0949 29 1 2.3769 1.8634 -2.0188 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0183 1.9343 2.1037 36 1 4.3036 4.7287 -1.2808 37 1 3.1670 4.2392 -2.5601 38 1 4.5286 7.6406 -2.5185 39 1 4.1790 5.9710 -3.0357 40 1 2.4660 6.7712 -4.6043 41 1 3.9859 7.6449 -4.9150 42 1 2.0766 9.2142 -4.8829 43 1 3.1708 9.5348 -3.5163 44 1 1.2466 10.6295 -2.2385 45 1 0.2606 10.3390 -3.6917 46 1 -1.3197 8.9805 -2.3481 47 1 -0.3338 9.2710 -0.8948 48 1 -1.0098 11.7691 -2.0263 49 1 -4.7058 13.0506 0.2235 50 1 1.0364 7.8328 -0.9679 51 1 2.4845 8.8516 -1.1734 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732274718.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:27 Heat of formation + Delta-G solvation = -10.109201 kcal Electronic energy + Delta-G solvation = -28617.320582 eV Core-core repulsion = 24743.980237 eV Total energy + Delta-G solvation = -3873.340345 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 3.80 seconds Orbital eigenvalues (eV) -43.11215 -41.16334 -38.88052 -37.09845 -35.17374 -35.00003 -33.62974 -33.39177 -32.61192 -32.11083 -29.37889 -28.14402 -26.16328 -25.73381 -24.26105 -23.81884 -22.37056 -22.20250 -21.80235 -21.10508 -19.85693 -19.62896 -18.53498 -18.00143 -17.03797 -16.68923 -16.55133 -16.21943 -15.91058 -15.68457 -15.33765 -15.15244 -15.06102 -14.93477 -14.72211 -14.49349 -14.44876 -14.16313 -14.07039 -13.87398 -13.67926 -13.40225 -13.09524 -12.95313 -12.86076 -12.62330 -12.49319 -12.33125 -12.06567 -12.05182 -11.91952 -11.86650 -11.72448 -11.54920 -11.19167 -10.99237 -10.96381 -10.86722 -10.76725 -9.59173 -9.35852 -9.19384 -8.07231 -5.42640 0.99305 1.34381 1.40566 1.48130 1.65766 1.82804 2.17863 2.34287 2.45586 3.22960 3.30493 3.47562 3.66946 3.85616 3.89391 3.93061 3.98440 4.03721 4.13166 4.15649 4.32862 4.35638 4.39319 4.42051 4.47945 4.50762 4.57179 4.67863 4.70283 4.72629 4.74150 4.89011 4.90753 4.93403 4.95209 5.02535 5.06634 5.18751 5.23017 5.30727 5.32229 5.37328 5.39161 5.53946 5.58510 5.69776 5.79645 6.16694 6.42044 6.55362 7.02867 7.18645 7.24098 7.77198 8.00275 9.14813 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012020 B = 0.002387 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.891462 B =11726.309163 C =13492.036130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.040 4.040 3 C -0.008 4.008 4 C -0.063 4.063 5 N -0.512 5.512 6 C 0.202 3.798 7 C -0.042 4.042 8 C 0.506 3.494 9 O -0.578 6.578 10 N -0.609 5.609 11 C 0.097 3.903 12 C -0.129 4.129 13 C -0.112 4.112 14 C -0.084 4.084 15 H 0.061 0.939 16 C -0.109 4.109 17 C 0.152 3.848 18 N -0.757 5.757 19 C -0.246 4.246 20 H 0.044 0.956 21 C -0.068 4.068 22 N -0.986 5.986 23 Si 0.967 3.033 24 H -0.272 1.272 25 H -0.292 1.292 26 H -0.248 1.248 27 C 0.116 3.884 28 N -0.550 5.550 29 H 0.433 0.567 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.168 0.832 36 H 0.146 0.854 37 H 0.152 0.848 38 H 0.085 0.915 39 H 0.118 0.882 40 H 0.064 0.936 41 H 0.106 0.894 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.011 0.989 47 H 0.011 0.989 48 H 0.369 0.631 49 H 0.260 0.740 50 H 0.052 0.948 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.237 -24.086 -14.062 38.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 C -0.125 4.125 4 C -0.211 4.211 5 N -0.232 5.232 6 C -0.062 4.062 7 C -0.083 4.083 8 C 0.294 3.706 9 O -0.456 6.456 10 N -0.343 5.343 11 C -0.024 4.024 12 C -0.167 4.167 13 C -0.150 4.150 14 C -0.104 4.104 15 H 0.080 0.920 16 C -0.148 4.148 17 C 0.026 3.974 18 N -0.404 5.404 19 C -0.377 4.377 20 H 0.062 0.938 21 C -0.259 4.259 22 N -0.636 5.636 23 Si 0.793 3.207 24 H -0.198 1.198 25 H -0.219 1.219 26 H -0.172 1.172 27 C -0.007 4.007 28 N -0.156 5.156 29 H 0.274 0.726 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.186 0.814 36 H 0.163 0.837 37 H 0.169 0.831 38 H 0.103 0.897 39 H 0.136 0.864 40 H 0.083 0.917 41 H 0.125 0.875 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.097 0.903 46 H 0.029 0.971 47 H 0.029 0.971 48 H 0.203 0.797 49 H 0.069 0.931 50 H 0.070 0.930 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 25.815 -23.554 -12.958 37.270 hybrid contribution -1.087 0.461 -0.262 1.209 sum 24.728 -23.093 -13.220 36.325 Atomic orbital electron populations 1.21775 0.94673 1.02786 1.01400 1.20098 0.95602 0.87034 1.05133 1.21672 1.06533 0.97593 0.86655 1.22387 1.08172 0.90521 0.99990 1.70147 1.19204 1.23385 1.10429 1.22674 1.04755 0.87972 0.90811 1.20106 1.01295 0.86349 1.00522 1.20945 0.84232 0.85139 0.80268 1.90800 1.34388 1.84695 1.35739 1.48210 1.34704 1.09805 1.41536 1.22285 0.88071 1.04635 0.87413 1.21996 1.01219 0.96460 0.96979 1.21585 0.96102 0.98638 0.98633 1.21343 0.97697 0.95867 0.95505 0.92023 1.21685 0.95267 0.97894 0.99920 1.20833 0.92828 0.87113 0.96656 1.42683 1.29374 1.06503 1.61791 1.19031 1.00964 0.94644 1.23023 0.93752 1.25687 0.97665 1.01687 1.00907 1.69921 1.21338 1.27113 1.45219 0.85239 0.79339 0.78244 0.77917 1.19806 1.21880 1.17186 1.21577 0.95012 0.86722 0.97385 1.42996 1.50518 1.11636 1.10410 0.72566 0.89968 0.93682 0.93780 0.88849 0.88155 0.81426 0.83668 0.83078 0.89672 0.86426 0.91675 0.87527 0.90685 0.90740 0.90899 0.90337 0.97050 0.97069 0.79711 0.93129 0.92964 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.89 71.98 0.71 -1.08 16 2 C -0.04 -0.41 6.49 29.85 0.19 -0.22 16 3 C -0.01 -0.14 6.49 40.95 0.27 0.12 16 4 C -0.06 -1.62 11.79 83.52 0.98 -0.64 16 5 N -0.51 -15.75 10.58 -188.13 -1.99 -17.74 16 6 C 0.20 4.49 6.96 138.13 0.96 5.45 16 7 C -0.04 -0.60 4.67 29.10 0.14 -0.47 16 8 C 0.51 12.93 7.69 87.66 0.67 13.60 16 9 O -0.58 -22.81 14.96 -3.05 -0.05 -22.86 16 10 N -0.61 -12.49 2.97 -817.99 -2.43 -14.92 16 11 C 0.10 0.87 6.37 86.51 0.55 1.42 16 12 C -0.13 -1.09 6.10 30.82 0.19 -0.90 16 13 C -0.11 -1.60 5.16 30.62 0.16 -1.44 16 14 C -0.08 -1.96 2.34 -10.70 -0.03 -1.99 16 15 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 16 C -0.11 -3.19 4.80 30.60 0.15 -3.05 16 17 C 0.15 6.44 6.02 86.38 0.52 6.96 16 18 N -0.76 -38.48 5.41 -343.45 -1.86 -40.33 16 19 C -0.25 -15.31 10.47 84.03 0.88 -14.43 16 20 H 0.04 3.09 8.06 -2.91 -0.02 3.06 16 21 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 22 N -0.99 -66.56 13.97 21.65 0.30 -66.25 16 23 Si 0.97 47.06 27.74 68.60 1.90 48.97 16 24 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 25 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 26 H -0.25 -10.73 6.52 99.48 0.65 -10.09 16 27 C 0.12 3.12 5.32 86.38 0.46 3.58 16 28 N -0.55 -8.64 6.15 -174.60 -1.07 -9.71 16 29 H 0.43 3.11 8.96 -92.71 -0.83 2.28 16 30 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.17 3.85 8.06 -2.91 -0.02 3.82 16 36 H 0.15 1.28 7.93 -2.39 -0.02 1.26 16 37 H 0.15 0.67 7.70 -2.39 -0.02 0.66 16 38 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.12 0.22 5.93 -2.38 -0.01 0.21 16 40 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.01 0.52 6.70 -2.39 -0.02 0.50 16 48 H 0.37 17.22 5.53 -92.71 -0.51 16.71 16 49 H 0.26 16.51 8.31 -92.71 -0.77 15.74 16 50 H 0.05 1.92 5.72 -2.39 -0.01 1.91 16 51 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -96.17 403.62 1.61 -94.55 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: -0.47 Total: 25.16 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 7.27 Total: 3.13 kcal Atomic # 7 Polarization: -141.91 SS G_CDS: -7.04 Total: -148.95 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.05 Total: -22.86 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.90 Total: 48.97 kcal Total: -96.17 1.61 -94.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732274718.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.443 kcal (2) G-P(sol) polarization free energy of solvation -96.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.81 seconds