Wall clock time and date at job start Tue Mar 31 2020 20:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47246 * 2 1 4 4 C 1.52995 * 109.47645 * 119.99979 * 2 1 3 5 5 C 1.50709 * 109.47134 * 240.00281 * 2 1 3 6 6 C 1.39669 * 126.06814 * 74.71136 * 5 2 1 7 7 C 1.38406 * 105.35770 * 179.85426 * 6 5 2 8 8 C 1.47165 * 126.88182 * 180.11002 * 7 6 5 9 9 O 1.21625 * 120.00075 * 0.32276 * 8 7 6 10 10 N 1.34776 * 119.99709 * 180.33250 * 8 7 6 11 11 C 1.46500 * 120.00141 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47137 * 175.30716 * 11 10 8 13 13 N 1.46497 * 110.01640 * 55.23637 * 12 11 10 14 14 C 1.36942 * 119.99979 * 62.76732 * 13 12 11 15 15 H 1.07993 * 119.99813 * 353.68684 * 14 13 12 16 16 C 1.38808 * 119.99828 * 173.68728 * 14 13 12 17 17 N 1.31621 * 119.99847 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00082 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46604 * 90.00157 * 18 16 14 20 20 H 1.48501 * 109.47064 * 209.99922 * 18 16 14 21 21 H 1.48497 * 109.47145 * 330.00437 * 18 16 14 22 22 C 1.54268 * 110.03214 * 293.79063 * 12 11 10 23 23 C 1.54890 * 104.19452 * 217.10602 * 22 12 11 24 24 C 1.54886 * 102.74918 * 37.94837 * 23 22 12 25 25 C 1.53877 * 110.02936 * 176.62858 * 12 11 10 26 26 N 1.36594 * 106.23051 * 0.39978 * 7 6 5 27 27 H 0.97006 * 125.19000 * 179.74070 * 26 7 6 28 28 N 1.28442 * 109.61921 * 359.73893 * 26 7 6 29 29 H 1.08994 * 109.47568 * 60.00134 * 1 2 3 30 30 H 1.08998 * 109.46879 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47311 * 299.99472 * 1 2 3 32 32 H 1.08999 * 109.47058 * 59.99521 * 3 2 1 33 33 H 1.08997 * 109.47484 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.46941 * 300.00342 * 3 2 1 35 35 H 1.08998 * 109.47135 * 59.99969 * 4 2 1 36 36 H 1.08997 * 109.47364 * 180.02562 * 4 2 1 37 37 H 1.09002 * 109.47214 * 300.00609 * 4 2 1 38 38 H 1.08006 * 127.32152 * 359.96575 * 6 5 2 39 39 H 0.97000 * 120.00311 * 359.97438 * 10 8 7 40 40 H 1.09002 * 109.47367 * 295.30943 * 11 10 8 41 41 H 1.09003 * 109.46881 * 55.30461 * 11 10 8 42 42 H 0.96998 * 119.99839 * 242.76379 * 13 12 11 43 43 H 0.96997 * 119.99737 * 179.97438 * 17 16 14 44 44 H 1.09000 * 110.48748 * 335.78978 * 22 12 11 45 45 H 1.08996 * 110.47964 * 98.43001 * 22 12 11 46 46 H 1.09003 * 110.75806 * 279.62913 * 23 22 12 47 47 H 1.09004 * 110.75087 * 156.25788 * 23 22 12 48 48 H 1.09000 * 110.48514 * 203.38223 * 24 23 22 49 49 H 1.08995 * 110.48805 * 80.73402 * 24 23 22 50 50 H 1.09001 * 110.03006 * 238.56957 * 25 12 11 51 51 H 1.08998 * 110.03548 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 2.0323 -0.7104 -1.2306 6 6 2.0257 -0.2045 -2.5324 7 6 2.5821 -1.2008 -3.3157 8 6 2.8034 -1.1608 -4.7700 9 8 2.4899 -0.1725 -5.4059 10 7 3.3534 -2.2193 -5.3973 11 6 3.5733 -2.1798 -6.8451 12 6 4.3102 -3.4469 -7.2838 13 7 3.5695 -4.6337 -6.8491 14 6 2.3087 -4.8679 -7.3295 15 1 1.8204 -4.1290 -7.9473 16 6 1.6584 -6.0551 -7.0222 17 7 0.4467 -6.2804 -7.4843 18 14 2.5034 -7.3335 -5.9539 19 1 2.1815 -7.0772 -4.5271 20 1 2.0275 -8.6882 -6.3332 21 1 3.9727 -7.2514 -6.1523 22 6 5.7334 -3.4634 -6.6886 23 6 6.6059 -4.0842 -7.8077 24 6 5.9902 -3.4818 -9.0950 25 6 4.4736 -3.4585 -8.8138 26 7 2.8784 -2.2311 -2.4693 27 1 3.2782 -3.0745 -2.7337 28 7 2.5469 -1.9129 -1.2698 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6768 -1.7489 1.2492 36 1 3.1300 -0.7208 1.2493 37 1 1.6767 -0.2074 2.1392 38 1 1.6651 0.7600 -2.8583 39 1 3.6037 -3.0074 -4.8901 40 1 2.6128 -2.1224 -7.3571 41 1 4.1725 -1.3050 -7.0978 42 1 3.9722 -5.2536 -6.2210 43 1 -0.0075 -7.1102 -7.2698 44 1 6.0649 -2.4495 -6.4644 45 1 5.7647 -4.0830 -5.7924 46 1 6.5173 -5.1706 -7.8088 47 1 7.6471 -3.7805 -7.6988 48 1 6.2091 -4.1149 -9.9549 49 1 6.3633 -2.4710 -9.2594 50 1 4.0025 -4.3477 -9.2328 51 1 4.0275 -2.5618 -9.2439 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732393563.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:58 Heat of formation + Delta-G solvation = 26.953408 kcal Electronic energy + Delta-G solvation = -29742.908934 eV Core-core repulsion = 25871.175744 eV Total energy + Delta-G solvation = -3871.733190 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.57200 -39.49444 -38.23308 -37.02359 -34.36173 -33.49074 -31.27747 -31.00517 -30.63908 -28.51183 -28.30949 -27.37545 -27.33429 -24.88021 -23.22349 -22.90507 -22.21443 -20.69978 -20.33409 -19.26252 -18.55998 -18.18099 -17.69191 -16.09884 -15.77729 -15.73850 -15.19910 -15.07070 -14.70016 -14.51480 -14.29261 -14.08352 -13.94165 -13.72808 -13.39096 -13.18436 -13.03001 -12.68290 -12.41960 -12.28189 -12.19049 -12.03354 -11.76779 -11.42538 -11.33633 -11.18533 -11.12398 -11.00052 -10.86604 -10.74993 -10.66182 -10.55981 -10.46508 -10.20733 -10.08555 -9.85847 -9.67255 -9.16856 -9.09344 -9.04748 -8.66602 -7.44022 -5.88281 -3.26901 1.36384 2.56140 2.81357 3.23161 3.26295 3.30079 3.35494 3.46257 4.31834 4.45745 4.63179 4.82788 4.88245 4.89517 4.94891 4.97767 5.08584 5.23386 5.29154 5.42561 5.48870 5.50422 5.55187 5.60399 5.65878 5.69249 5.77752 5.78186 5.80475 5.81100 5.91115 5.95313 5.97995 6.02826 6.04134 6.15621 6.20148 6.23616 6.25460 6.36662 6.45321 6.48264 6.50214 6.65924 6.72011 6.94143 6.99297 7.70222 7.88715 8.01404 8.29986 8.35568 9.06504 9.78148 9.96351 11.29392 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011960 B = 0.003348 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.651593 B = 8360.678643 C = 9519.190325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.018 3.982 3 C -0.138 4.138 4 C -0.135 4.135 5 C 0.036 3.964 6 C -0.154 4.154 7 C -0.026 4.026 8 C 0.584 3.416 9 O -0.532 6.532 10 N -0.698 5.698 11 C 0.119 3.881 12 C 0.194 3.806 13 N -0.738 5.738 14 C -0.244 4.244 15 H 0.092 0.908 16 C 0.011 3.989 17 N -0.927 5.927 18 Si 0.877 3.123 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.275 1.275 22 C -0.127 4.127 23 C -0.120 4.120 24 C -0.121 4.121 25 C -0.128 4.128 26 N -0.378 5.378 27 H 0.444 0.556 28 N -0.268 5.268 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.161 0.839 39 H 0.395 0.605 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.360 0.640 43 H 0.260 0.740 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.058 0.942 48 H 0.059 0.941 49 H 0.058 0.942 50 H 0.087 0.913 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.844 11.147 11.724 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.016 3.984 3 C -0.196 4.196 4 C -0.192 4.192 5 C -0.123 4.123 6 C -0.183 4.183 7 C -0.154 4.154 8 C 0.368 3.632 9 O -0.408 6.408 10 N -0.347 5.347 11 C -0.006 4.006 12 C 0.102 3.898 13 N -0.381 5.381 14 C -0.374 4.374 15 H 0.110 0.890 16 C -0.186 4.186 17 N -0.574 5.574 18 Si 0.707 3.293 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.201 1.201 22 C -0.165 4.165 23 C -0.158 4.158 24 C -0.159 4.159 25 C -0.168 4.168 26 N -0.093 5.093 27 H 0.289 0.711 28 N -0.101 5.101 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.178 0.822 39 H 0.229 0.771 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.193 0.807 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.077 0.923 50 H 0.105 0.895 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.663 10.936 11.726 18.225 hybrid contribution 0.472 -1.434 0.217 1.525 sum 9.135 9.503 11.943 17.787 Atomic orbital electron populations 1.21877 0.93341 1.02356 1.02097 1.18882 0.95397 0.94147 0.89955 1.21878 1.01302 0.94265 1.02192 1.21765 1.01205 1.00609 0.95626 1.21858 1.03316 0.91762 0.95348 1.21921 1.04407 1.00493 0.91517 1.21894 1.09286 0.91693 0.92576 1.16966 0.78268 0.83757 0.84167 1.90807 1.51593 1.32751 1.65643 1.45653 1.61977 1.16994 1.10121 1.22033 1.01402 0.98350 0.78825 1.20427 0.89372 0.86759 0.93240 1.42926 1.16516 1.24896 1.53792 1.18941 0.89406 1.01872 1.27144 0.89007 1.24688 0.96374 0.97321 1.00193 1.69692 1.12892 1.26124 1.48692 0.86680 0.79190 0.82650 0.80734 1.21318 1.21731 1.20129 1.22641 0.95118 1.00601 0.98132 1.22425 0.97839 1.00426 0.95077 1.22324 0.96310 0.99930 0.97329 1.22605 0.94962 1.02956 0.96279 1.43634 1.46163 1.15542 1.04000 0.71069 1.73046 1.16987 1.16948 1.03116 0.92119 0.92400 0.92017 0.91993 0.92449 0.92037 0.91989 0.92561 0.92559 0.82154 0.77120 0.90921 0.91954 0.80710 0.92976 0.91286 0.91992 0.91471 0.92348 0.92203 0.92335 0.89482 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.46 37.15 0.31 -0.99 16 2 C 0.02 0.18 0.96 -155.66 -0.15 0.03 16 3 C -0.14 -1.17 8.21 37.16 0.30 -0.87 16 4 C -0.13 -1.26 8.04 37.15 0.30 -0.96 16 5 C 0.04 0.46 5.64 -82.47 -0.47 0.00 16 6 C -0.15 -2.17 10.13 -38.99 -0.39 -2.57 16 7 C -0.03 -0.39 7.16 -82.06 -0.59 -0.97 16 8 C 0.58 9.95 7.80 -12.64 -0.10 9.85 16 9 O -0.53 -10.61 16.92 5.26 0.09 -10.52 16 10 N -0.70 -11.14 5.22 -61.47 -0.32 -11.46 16 11 C 0.12 2.02 4.06 -4.04 -0.02 2.00 16 12 C 0.19 3.18 0.68 -130.70 -0.09 3.10 16 13 N -0.74 -14.85 4.32 -46.20 -0.20 -15.05 16 14 C -0.24 -6.16 8.96 -15.06 -0.13 -6.29 16 15 H 0.09 2.57 7.55 -52.49 -0.40 2.17 16 16 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 17 N -0.93 -27.83 13.97 55.49 0.78 -27.06 16 18 Si 0.88 20.48 27.67 -169.99 -4.70 15.77 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 21 H -0.28 -5.97 6.62 56.52 0.37 -5.60 16 22 C -0.13 -1.70 5.73 -25.07 -0.14 -1.85 16 23 C -0.12 -1.54 6.91 -24.74 -0.17 -1.71 16 24 C -0.12 -1.60 6.83 -25.07 -0.17 -1.77 16 25 C -0.13 -2.08 5.92 -25.61 -0.15 -2.24 16 26 N -0.38 -5.06 6.85 33.48 0.23 -4.83 16 27 H 0.44 4.97 8.22 -190.45 -1.57 3.40 16 28 N -0.27 -3.71 11.48 33.64 0.39 -3.33 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.51 7.61 -51.92 -0.39 0.12 16 35 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.16 2.08 7.80 -52.48 -0.41 1.67 16 39 H 0.39 5.74 7.18 -40.82 -0.29 5.45 16 40 H 0.07 1.45 7.52 -51.93 -0.39 1.06 16 41 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 42 H 0.36 7.11 5.38 -40.82 -0.22 6.89 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.07 0.85 7.79 -51.93 -0.40 0.44 16 45 H 0.06 0.80 7.71 -51.93 -0.40 0.40 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.09 1.68 7.32 -51.93 -0.38 1.30 16 51 H 0.06 0.89 7.67 -51.93 -0.40 0.49 16 LS Contribution 403.99 15.07 6.09 6.09 Total: -1.00 -31.38 403.99 -9.31 -40.69 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: -9.90 Total: 14.74 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.75 Total: -5.04 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: 0.87 Total: -61.73 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.70 Total: 15.77 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.38 -9.31 -40.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732393563.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.644 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds