Wall clock time and date at job start Tue Mar 31 2020 20:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47246 * 2 1 4 4 C 1.52995 * 109.47645 * 119.99979 * 2 1 3 5 5 C 1.50709 * 109.47134 * 240.00281 * 2 1 3 6 6 C 1.39669 * 126.06814 * 74.71136 * 5 2 1 7 7 C 1.38406 * 105.35770 * 179.85426 * 6 5 2 8 8 C 1.47165 * 126.88182 * 180.11002 * 7 6 5 9 9 O 1.21625 * 120.00075 * 0.32276 * 8 7 6 10 10 N 1.34776 * 119.99709 * 180.33250 * 8 7 6 11 11 C 1.46500 * 120.00141 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47137 * 175.30716 * 11 10 8 13 13 N 1.46497 * 110.01640 * 55.23637 * 12 11 10 14 14 C 1.36942 * 119.99979 * 62.76732 * 13 12 11 15 15 H 1.07993 * 119.99813 * 353.68684 * 14 13 12 16 16 C 1.38808 * 119.99828 * 173.68728 * 14 13 12 17 17 N 1.31621 * 119.99847 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00082 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46604 * 90.00157 * 18 16 14 20 20 H 1.48501 * 109.47064 * 209.99922 * 18 16 14 21 21 H 1.48497 * 109.47145 * 330.00437 * 18 16 14 22 22 C 1.54268 * 110.03214 * 293.79063 * 12 11 10 23 23 C 1.54890 * 104.19452 * 217.10602 * 22 12 11 24 24 C 1.54886 * 102.74918 * 37.94837 * 23 22 12 25 25 C 1.53877 * 110.02936 * 176.62858 * 12 11 10 26 26 N 1.36594 * 106.23051 * 0.39978 * 7 6 5 27 27 H 0.97006 * 125.19000 * 179.74070 * 26 7 6 28 28 N 1.28442 * 109.61921 * 359.73893 * 26 7 6 29 29 H 1.08994 * 109.47568 * 60.00134 * 1 2 3 30 30 H 1.08998 * 109.46879 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47311 * 299.99472 * 1 2 3 32 32 H 1.08999 * 109.47058 * 59.99521 * 3 2 1 33 33 H 1.08997 * 109.47484 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.46941 * 300.00342 * 3 2 1 35 35 H 1.08998 * 109.47135 * 59.99969 * 4 2 1 36 36 H 1.08997 * 109.47364 * 180.02562 * 4 2 1 37 37 H 1.09002 * 109.47214 * 300.00609 * 4 2 1 38 38 H 1.08006 * 127.32152 * 359.96575 * 6 5 2 39 39 H 0.97000 * 120.00311 * 359.97438 * 10 8 7 40 40 H 1.09002 * 109.47367 * 295.30943 * 11 10 8 41 41 H 1.09003 * 109.46881 * 55.30461 * 11 10 8 42 42 H 0.96998 * 119.99839 * 242.76379 * 13 12 11 43 43 H 0.96997 * 119.99737 * 179.97438 * 17 16 14 44 44 H 1.09000 * 110.48748 * 335.78978 * 22 12 11 45 45 H 1.08996 * 110.47964 * 98.43001 * 22 12 11 46 46 H 1.09003 * 110.75806 * 279.62913 * 23 22 12 47 47 H 1.09004 * 110.75087 * 156.25788 * 23 22 12 48 48 H 1.09000 * 110.48514 * 203.38223 * 24 23 22 49 49 H 1.08995 * 110.48805 * 80.73402 * 24 23 22 50 50 H 1.09001 * 110.03006 * 238.56957 * 25 12 11 51 51 H 1.08998 * 110.03548 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 2.0323 -0.7104 -1.2306 6 6 2.0257 -0.2045 -2.5324 7 6 2.5821 -1.2008 -3.3157 8 6 2.8034 -1.1608 -4.7700 9 8 2.4899 -0.1725 -5.4059 10 7 3.3534 -2.2193 -5.3973 11 6 3.5733 -2.1798 -6.8451 12 6 4.3102 -3.4469 -7.2838 13 7 3.5695 -4.6337 -6.8491 14 6 2.3087 -4.8679 -7.3295 15 1 1.8204 -4.1290 -7.9473 16 6 1.6584 -6.0551 -7.0222 17 7 0.4467 -6.2804 -7.4843 18 14 2.5034 -7.3335 -5.9539 19 1 2.1815 -7.0772 -4.5271 20 1 2.0275 -8.6882 -6.3332 21 1 3.9727 -7.2514 -6.1523 22 6 5.7334 -3.4634 -6.6886 23 6 6.6059 -4.0842 -7.8077 24 6 5.9902 -3.4818 -9.0950 25 6 4.4736 -3.4585 -8.8138 26 7 2.8784 -2.2311 -2.4693 27 1 3.2782 -3.0745 -2.7337 28 7 2.5469 -1.9129 -1.2698 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6768 -1.7489 1.2492 36 1 3.1300 -0.7208 1.2493 37 1 1.6767 -0.2074 2.1392 38 1 1.6651 0.7600 -2.8583 39 1 3.6037 -3.0074 -4.8901 40 1 2.6128 -2.1224 -7.3571 41 1 4.1725 -1.3050 -7.0978 42 1 3.9722 -5.2536 -6.2210 43 1 -0.0075 -7.1102 -7.2698 44 1 6.0649 -2.4495 -6.4644 45 1 5.7647 -4.0830 -5.7924 46 1 6.5173 -5.1706 -7.8088 47 1 7.6471 -3.7805 -7.6988 48 1 6.2091 -4.1149 -9.9549 49 1 6.3633 -2.4710 -9.2594 50 1 4.0025 -4.3477 -9.2328 51 1 4.0275 -2.5618 -9.2439 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732393563.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:56 Heat of formation + Delta-G solvation = 6.111576 kcal Electronic energy + Delta-G solvation = -29743.812704 eV Core-core repulsion = 25871.175744 eV Total energy + Delta-G solvation = -3872.636960 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.66249 -40.87221 -39.59075 -37.84063 -35.73352 -35.26371 -32.98097 -32.12132 -31.89791 -29.81345 -29.62006 -28.10931 -28.06189 -26.31369 -24.90327 -24.04742 -23.34298 -21.87963 -21.50867 -20.61245 -19.65027 -19.59518 -19.36673 -17.48854 -16.95891 -16.92679 -16.59374 -16.24350 -16.04988 -15.79992 -15.70147 -15.10210 -14.86903 -14.80217 -14.71966 -14.50400 -14.38671 -14.19871 -13.77602 -13.51044 -13.08301 -12.99668 -12.94608 -12.73802 -12.49560 -12.36140 -12.20441 -12.01005 -11.92913 -11.89317 -11.87725 -11.86471 -11.70877 -11.56861 -11.48795 -11.34849 -11.22032 -10.95268 -10.37714 -10.16170 -10.00318 -9.33483 -7.99431 -5.34586 0.15289 1.35268 1.40026 1.47903 1.50472 1.74468 2.00400 2.15675 2.48709 3.28609 3.36267 3.49479 3.62957 3.71250 3.81742 3.87730 3.99873 4.13857 4.21225 4.33921 4.38599 4.46337 4.49959 4.64231 4.66657 4.70550 4.80316 4.85265 4.87432 4.90766 4.96401 4.97142 5.04426 5.08408 5.08856 5.16297 5.16604 5.24126 5.27054 5.30730 5.36302 5.44600 5.48122 5.49361 5.51194 5.62875 5.86567 5.92290 6.23941 6.39662 6.91513 7.01965 7.10473 7.83442 8.03628 9.22137 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011960 B = 0.003348 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.651593 B = 8360.678643 C = 9519.190325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.015 3.985 3 C -0.136 4.136 4 C -0.131 4.131 5 C 0.036 3.964 6 C -0.158 4.158 7 C -0.042 4.042 8 C 0.585 3.415 9 O -0.567 6.567 10 N -0.692 5.692 11 C 0.127 3.873 12 C 0.189 3.811 13 N -0.734 5.734 14 C -0.209 4.209 15 H 0.051 0.949 16 C -0.063 4.063 17 N -0.986 5.986 18 Si 0.947 3.053 19 H -0.278 1.278 20 H -0.308 1.308 21 H -0.243 1.243 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.114 4.114 25 C -0.131 4.131 26 N -0.371 5.371 27 H 0.453 0.547 28 N -0.275 5.275 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.078 0.922 38 H 0.167 0.833 39 H 0.403 0.597 40 H 0.031 0.969 41 H 0.079 0.921 42 H 0.367 0.633 43 H 0.254 0.746 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.056 0.944 47 H 0.088 0.912 48 H 0.064 0.936 49 H 0.080 0.920 50 H 0.049 0.951 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.751 11.856 14.049 21.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.013 3.987 3 C -0.194 4.194 4 C -0.188 4.188 5 C -0.122 4.122 6 C -0.187 4.187 7 C -0.171 4.171 8 C 0.371 3.629 9 O -0.445 6.445 10 N -0.341 5.341 11 C 0.001 3.999 12 C 0.099 3.901 13 N -0.378 5.378 14 C -0.341 4.341 15 H 0.069 0.931 16 C -0.254 4.254 17 N -0.637 5.637 18 Si 0.775 3.225 19 H -0.205 1.205 20 H -0.236 1.236 21 H -0.167 1.167 22 C -0.157 4.157 23 C -0.153 4.153 24 C -0.152 4.152 25 C -0.171 4.171 26 N -0.088 5.088 27 H 0.299 0.701 28 N -0.108 5.108 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.185 0.815 39 H 0.239 0.761 40 H 0.050 0.950 41 H 0.097 0.903 42 H 0.201 0.799 43 H 0.062 0.938 44 H 0.107 0.893 45 H 0.092 0.908 46 H 0.074 0.926 47 H 0.107 0.893 48 H 0.082 0.918 49 H 0.098 0.902 50 H 0.068 0.932 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.651 11.655 14.068 21.668 hybrid contribution -0.472 -1.518 -0.559 1.685 sum 11.179 10.138 13.510 20.254 Atomic orbital electron populations 1.21879 0.92791 1.01756 1.03104 1.19075 0.95798 0.94906 0.88925 1.21870 1.01076 0.93154 1.03251 1.21739 1.00874 1.00062 0.96157 1.22374 1.02424 0.91367 0.96033 1.22159 1.03890 1.00653 0.92004 1.21663 1.10873 0.92879 0.91705 1.17198 0.77513 0.83284 0.84916 1.90782 1.53077 1.34027 1.66631 1.45574 1.61649 1.17162 1.09687 1.21893 0.99583 0.99336 0.79106 1.20690 0.91081 0.84685 0.93687 1.42841 1.15038 1.26190 1.53734 1.18753 0.90815 1.00098 1.24386 0.93083 1.25465 0.97134 1.00026 1.02789 1.69902 1.15285 1.26727 1.51788 0.85530 0.79689 0.78451 0.78792 1.20468 1.23604 1.16736 1.22630 0.92184 1.02269 0.98664 1.22430 0.99292 0.99671 0.93949 1.22308 0.93328 1.01503 0.98065 1.22558 0.97632 1.01037 0.95826 1.43640 1.45953 1.15564 1.03606 0.70074 1.73061 1.17201 1.17434 1.03083 0.92549 0.93780 0.89630 0.89814 0.92800 0.92162 0.93264 0.93017 0.90304 0.81540 0.76101 0.95040 0.90292 0.79887 0.93760 0.89274 0.90774 0.92552 0.89318 0.91757 0.90171 0.93221 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.46 71.98 0.61 -1.73 16 2 C 0.01 0.27 0.96 -52.93 -0.05 0.22 16 3 C -0.14 -1.98 8.21 71.98 0.59 -1.39 16 4 C -0.13 -2.18 8.04 71.98 0.58 -1.60 16 5 C 0.04 0.89 5.64 43.05 0.24 1.14 16 6 C -0.16 -4.34 10.13 22.66 0.23 -4.11 16 7 C -0.04 -1.26 7.16 40.79 0.29 -0.97 16 8 C 0.59 19.94 7.80 86.59 0.68 20.61 16 9 O -0.57 -22.95 16.92 -4.11 -0.07 -23.02 16 10 N -0.69 -21.75 5.22 -466.63 -2.44 -24.19 16 11 C 0.13 4.29 4.06 86.38 0.35 4.64 16 12 C 0.19 6.03 0.68 4.33 0.00 6.03 16 13 N -0.73 -29.11 4.32 -300.08 -1.30 -30.41 16 14 C -0.21 -10.89 8.96 84.03 0.75 -10.14 16 15 H 0.05 3.05 7.55 -2.91 -0.02 3.03 16 16 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 17 N -0.99 -61.95 13.97 21.65 0.30 -61.64 16 18 Si 0.95 42.48 27.67 68.60 1.90 44.38 16 19 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.31 -14.71 7.11 99.48 0.71 -14.00 16 21 H -0.24 -9.49 6.62 99.48 0.66 -8.83 16 22 C -0.12 -2.79 5.73 31.67 0.18 -2.61 16 23 C -0.12 -2.52 6.91 31.88 0.22 -2.30 16 24 C -0.11 -2.72 6.83 31.67 0.22 -2.51 16 25 C -0.13 -4.23 5.92 31.32 0.19 -4.04 16 26 N -0.37 -9.54 6.85 -48.00 -0.33 -9.87 16 27 H 0.45 9.48 8.22 -220.00 -1.81 7.67 16 28 N -0.27 -7.28 11.48 -47.49 -0.54 -7.83 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.90 7.61 -2.38 -0.02 0.88 16 35 H 0.05 0.94 8.08 -2.39 -0.02 0.92 16 36 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.17 4.26 7.80 -2.91 -0.02 4.24 16 39 H 0.40 11.21 7.18 -92.71 -0.67 10.54 16 40 H 0.03 1.32 7.52 -2.39 -0.02 1.31 16 41 H 0.08 2.43 8.04 -2.39 -0.02 2.41 16 42 H 0.37 13.66 5.38 -92.71 -0.50 13.17 16 43 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.09 1.79 7.79 -2.39 -0.02 1.77 16 45 H 0.07 1.60 7.71 -2.39 -0.02 1.58 16 46 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.05 1.97 7.32 -2.39 -0.02 1.95 16 51 H 0.05 1.75 7.67 -2.39 -0.02 1.73 16 Total: -1.00 -71.57 403.99 0.99 -70.58 By element: Atomic # 1 Polarization: 45.88 SS G_CDS: -2.08 Total: 43.80 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 5.54 Total: -1.81 kcal Atomic # 7 Polarization: -129.63 SS G_CDS: -4.31 Total: -133.94 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.07 Total: -23.02 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.90 Total: 44.38 kcal Total: -71.57 0.99 -70.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732393563.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.692 kcal (2) G-P(sol) polarization free energy of solvation -71.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds