Wall clock time and date at job start Tue Mar 31 2020 18:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.47447 * 2 1 4 4 C 1.34666 * 126.59623 * 274.69113 * 3 2 1 5 5 N 1.34124 * 108.02262 * 179.87008 * 4 3 2 6 6 C 1.30502 * 109.25523 * 0.40007 * 5 4 3 7 7 C 1.50703 * 125.64950 * 179.77182 * 6 5 4 8 8 C 1.50698 * 109.47227 * 304.97501 * 7 6 5 9 9 O 1.21279 * 120.00070 * 0.02562 * 8 7 6 10 10 N 1.34770 * 119.99764 * 179.97438 * 8 7 6 11 11 C 1.46929 * 120.63447 * 354.83425 * 10 8 7 12 12 C 1.53193 * 108.77611 * 126.36317 * 11 10 8 13 13 C 1.53039 * 109.31262 * 54.63666 * 12 11 10 14 14 C 1.53035 * 109.53786 * 298.63035 * 13 12 11 15 15 H 1.09005 * 109.49857 * 181.35113 * 14 13 12 16 16 C 1.52997 * 109.49874 * 301.41614 * 14 13 12 17 17 C 1.46934 * 120.62859 * 174.54677 * 10 8 7 18 18 H 1.08997 * 109.58558 * 113.84677 * 17 10 8 19 19 C 1.52997 * 109.58802 * 353.42056 * 17 10 8 20 20 N 1.46502 * 109.46685 * 73.34505 * 19 17 10 21 21 C 1.36939 * 119.99939 * 174.77200 * 20 19 17 22 22 H 1.07998 * 119.99911 * 0.02562 * 21 20 19 23 23 C 1.38814 * 120.00333 * 180.02562 * 21 20 19 24 24 N 1.31623 * 119.99674 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00203 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47271 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47298 * 120.00151 * 25 23 21 28 28 H 1.48502 * 109.47117 * 239.99706 * 25 23 21 29 29 N 1.35044 * 108.70114 * 359.75525 * 6 5 4 30 30 H 0.96994 * 126.39809 * 180.02562 * 29 6 5 31 31 H 1.08992 * 109.47513 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47036 * 59.99395 * 1 2 3 33 33 H 1.09003 * 109.47026 * 299.99740 * 1 2 3 34 34 H 1.08995 * 109.47243 * 120.00201 * 2 1 3 35 35 H 1.09003 * 109.47026 * 240.00259 * 2 1 3 36 36 H 1.08000 * 125.98311 * 0.02562 * 4 3 2 37 37 H 1.09000 * 109.46794 * 64.97503 * 7 6 5 38 38 H 1.08998 * 109.47194 * 184.97565 * 7 6 5 39 39 H 1.09000 * 109.58242 * 246.15404 * 11 10 8 40 40 H 1.08994 * 109.58281 * 6.43109 * 11 10 8 41 41 H 1.09004 * 109.49019 * 174.58796 * 12 11 10 42 42 H 1.08997 * 109.49703 * 294.68003 * 12 11 10 43 43 H 1.09000 * 109.46299 * 58.65339 * 13 12 11 44 44 H 1.08998 * 109.45901 * 178.62681 * 13 12 11 45 45 H 1.08994 * 109.47178 * 59.99943 * 16 14 13 46 46 H 1.09002 * 109.47204 * 179.97438 * 16 14 13 47 47 H 1.08999 * 109.47017 * 300.00024 * 16 14 13 48 48 H 1.08996 * 109.47769 * 193.34497 * 19 17 10 49 49 H 1.08996 * 109.47315 * 313.35128 * 19 17 10 50 50 H 0.96995 * 120.00281 * 354.78104 * 20 19 17 51 51 H 0.97001 * 119.99825 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2167 2.2072 -1.0776 5 7 2.6708 3.3952 -0.6515 6 6 2.7830 3.3720 0.6484 7 6 3.2655 4.5113 1.5089 8 6 4.6206 4.9639 1.0295 9 8 5.1430 4.4157 0.0822 10 7 5.2515 5.9786 1.6530 11 6 4.5852 6.7271 2.7275 12 6 5.4879 6.7218 3.9651 13 6 6.8692 7.2612 3.5865 14 6 7.4990 6.3558 2.5256 15 1 8.4925 6.7269 2.2738 16 6 7.6092 4.9305 3.0708 17 6 6.6212 6.3532 1.2753 18 1 6.6185 7.3490 0.8320 19 6 7.1703 5.3414 0.2676 20 7 6.5298 5.5511 -1.0332 21 6 6.9406 4.8305 -2.1228 22 1 7.7366 4.1074 -2.0231 23 6 6.3341 5.0295 -3.3555 24 7 5.3644 5.9111 -3.4771 25 14 6.8941 4.0460 -4.8416 26 1 7.9917 3.1285 -4.4430 27 1 5.7539 3.2547 -5.3698 28 1 7.3823 4.9735 -5.8936 29 7 2.3948 2.1581 1.0950 30 1 2.3758 1.8637 2.0190 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5140 -0.8900 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 2.0291 1.9306 -2.1045 37 1 2.5610 5.3404 1.4424 38 1 3.3387 4.1789 2.5443 39 1 4.4132 7.7540 2.4049 40 1 3.6324 6.2544 2.9655 41 1 5.0497 7.3539 4.7376 42 1 5.5854 5.7030 4.3400 43 1 6.7682 8.2710 3.1886 44 1 7.5060 7.2814 4.4708 45 1 6.6155 4.5594 3.3213 46 1 8.0574 4.2859 2.3147 47 1 8.2330 4.9307 3.9647 48 1 8.2474 5.4756 0.1680 49 1 6.9609 4.3304 0.6168 50 1 5.8148 6.2004 -1.1228 51 1 4.9404 6.0499 -4.3384 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732541137.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:02 Heat of formation + Delta-G solvation = 70.136111 kcal Electronic energy + Delta-G solvation = -31001.828833 eV Core-core repulsion = 27131.968185 eV Total energy + Delta-G solvation = -3869.860647 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 3.10 seconds Orbital eigenvalues (eV) -41.77225 -40.19802 -37.20051 -34.61703 -33.98653 -33.15693 -32.08356 -31.95875 -30.77506 -29.88861 -27.33152 -26.50136 -25.79667 -24.03412 -23.25583 -22.55889 -21.42420 -20.64959 -20.44268 -19.44484 -18.03609 -17.11851 -16.93661 -16.19739 -15.55430 -15.04228 -14.86908 -14.75117 -14.53700 -14.31414 -14.09746 -13.76956 -13.60996 -13.33164 -13.15977 -13.02628 -12.87467 -12.53570 -12.38799 -12.28884 -12.23830 -11.97142 -11.75669 -11.58820 -11.39910 -11.26671 -11.24181 -10.90451 -10.81218 -10.57497 -10.50704 -10.29512 -10.08267 -9.67423 -9.54857 -9.32295 -9.27324 -8.48501 -8.26631 -7.91517 -7.80972 -6.29690 -5.33646 -2.52775 2.28863 3.17109 3.46347 3.52245 3.67116 3.71107 3.73692 3.77496 4.64441 4.76763 4.83639 4.87746 4.89441 4.92143 4.97494 5.12672 5.17491 5.22242 5.22748 5.35804 5.45315 5.53319 5.58211 5.61387 5.63678 5.74578 5.76064 5.81980 5.87551 5.87695 5.94597 5.99060 6.00555 6.05862 6.08909 6.11326 6.18367 6.25793 6.36676 6.52722 6.56191 6.68805 6.83356 7.04211 7.16164 7.39081 7.65516 8.04760 8.07374 8.62938 8.83490 9.12564 9.95470 10.56911 10.91123 11.90216 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007309 B = 0.005720 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3830.070094 B = 4893.791962 C = 7948.655629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.043 4.043 3 C -0.037 4.037 4 C -0.012 4.012 5 N -0.431 5.431 6 C 0.218 3.782 7 C -0.049 4.049 8 C 0.472 3.528 9 O -0.409 6.409 10 N -0.616 5.616 11 C 0.111 3.889 12 C -0.136 4.136 13 C -0.112 4.112 14 C -0.100 4.100 15 H 0.078 0.922 16 C -0.143 4.143 17 C 0.150 3.850 18 H 0.067 0.933 19 C 0.165 3.835 20 N -0.693 5.693 21 C -0.206 4.206 22 H 0.059 0.941 23 C -0.015 4.015 24 N -0.929 5.929 25 Si 0.895 3.105 26 H -0.286 1.286 27 H -0.296 1.296 28 H -0.298 1.298 29 N -0.568 5.568 30 H 0.409 0.591 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.163 0.837 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.054 0.946 46 H 0.060 0.940 47 H 0.045 0.955 48 H 0.011 0.989 49 H 0.034 0.966 50 H 0.381 0.619 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.986 -4.099 20.501 22.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.081 4.081 3 C -0.152 4.152 4 C -0.162 4.162 5 N -0.148 5.148 6 C -0.046 4.046 7 C -0.091 4.091 8 C 0.254 3.746 9 O -0.274 6.274 10 N -0.355 5.355 11 C -0.013 4.013 12 C -0.174 4.174 13 C -0.150 4.150 14 C -0.120 4.120 15 H 0.096 0.904 16 C -0.200 4.200 17 C 0.046 3.954 18 H 0.085 0.915 19 C 0.037 3.963 20 N -0.336 5.336 21 C -0.339 4.339 22 H 0.078 0.922 23 C -0.210 4.210 24 N -0.580 5.580 25 Si 0.728 3.272 26 H -0.211 1.211 27 H -0.224 1.224 28 H -0.226 1.226 29 N -0.172 5.172 30 H 0.245 0.755 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.180 0.820 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.064 0.936 48 H 0.029 0.971 49 H 0.051 0.949 50 H 0.215 0.785 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.413 -3.890 19.232 20.642 hybrid contribution -0.294 -1.107 0.167 1.158 sum -6.707 -4.998 19.398 21.125 Atomic orbital electron populations 1.21772 0.94810 1.01464 1.02330 1.19908 0.95672 0.89517 1.03046 1.21084 1.10427 0.96170 0.87521 1.22126 1.05016 0.90650 0.98371 1.70450 1.14521 1.22620 1.07232 1.22382 1.04340 0.86606 0.91298 1.19960 0.97612 0.94754 0.96812 1.20029 0.86961 0.83064 0.84519 1.91302 1.63228 1.51793 1.21037 1.47815 1.15213 1.34629 1.37851 1.21578 0.95393 0.96997 0.87301 1.21961 0.96237 1.01817 0.97410 1.21520 0.95991 0.98995 0.98488 1.21404 0.99150 0.96176 0.95283 0.90359 1.21837 1.01448 0.96397 1.00296 1.21335 0.80444 0.99606 0.93971 0.91545 1.20828 0.93508 0.95609 0.86323 1.42180 1.41855 1.46765 1.02762 1.19073 1.12911 1.14625 0.87252 0.92250 1.24531 0.99107 1.00132 0.97235 1.69661 1.27504 1.37782 1.23011 0.86262 0.77328 0.79466 0.84127 1.21141 1.22364 1.22565 1.43059 1.52419 1.12694 1.09075 0.75478 0.92403 0.92024 0.93104 0.91724 0.89648 0.81984 0.87693 0.89133 0.91881 0.90549 0.91457 0.91396 0.91887 0.92165 0.92663 0.92117 0.93567 0.97117 0.94894 0.78536 0.94322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.89 37.16 0.37 -0.92 16 2 C -0.04 -0.44 6.49 -27.88 -0.18 -0.62 16 3 C -0.04 -0.54 6.49 -81.60 -0.53 -1.07 16 4 C -0.01 -0.23 11.79 -17.82 -0.21 -0.44 16 5 N -0.43 -9.42 10.58 -10.82 -0.11 -9.53 16 6 C 0.22 3.76 6.96 -155.41 -1.08 2.68 16 7 C -0.05 -0.70 4.68 -29.03 -0.14 -0.84 16 8 C 0.47 8.72 7.31 -10.99 -0.08 8.64 16 9 O -0.41 -9.99 9.29 5.56 0.05 -9.94 16 10 N -0.62 -9.51 2.42 -165.47 -0.40 -9.91 16 11 C 0.11 1.20 6.35 -3.71 -0.02 1.18 16 12 C -0.14 -1.22 5.74 -26.61 -0.15 -1.37 16 13 C -0.11 -1.13 5.43 -26.69 -0.14 -1.28 16 14 C -0.10 -1.30 2.76 -90.72 -0.25 -1.55 16 15 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 16 C -0.14 -1.80 8.22 37.16 0.31 -1.50 16 17 C 0.15 2.54 2.59 -67.82 -0.18 2.36 16 18 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 19 C 0.17 3.64 3.91 -4.04 -0.02 3.63 16 20 N -0.69 -19.20 3.20 -59.91 -0.19 -19.39 16 21 C -0.21 -6.39 9.73 -15.06 -0.15 -6.54 16 22 H 0.06 1.83 7.83 -52.49 -0.41 1.42 16 23 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 24 N -0.93 -30.87 13.06 55.49 0.72 -30.15 16 25 Si 0.89 24.90 29.55 -169.99 -5.02 19.87 16 26 H -0.29 -7.73 7.11 56.52 0.40 -7.32 16 27 H -0.30 -8.34 7.11 56.52 0.40 -7.94 16 28 H -0.30 -8.20 7.11 56.52 0.40 -7.80 16 29 N -0.57 -7.73 6.15 -6.54 -0.04 -7.77 16 30 H 0.41 3.90 8.96 -40.82 -0.37 3.53 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.16 2.85 8.06 -52.49 -0.42 2.43 16 37 H 0.11 1.35 7.73 -51.93 -0.40 0.95 16 38 H 0.09 0.90 7.91 -51.93 -0.41 0.49 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.66 5.92 -51.93 -0.31 0.35 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.62 6.34 -51.93 -0.33 0.29 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.05 0.70 5.97 -51.93 -0.31 0.39 16 46 H 0.06 0.89 6.63 -51.93 -0.34 0.54 16 47 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.01 0.25 8.08 -51.93 -0.42 -0.17 16 49 H 0.03 0.79 5.35 -51.93 -0.28 0.51 16 50 H 0.38 11.36 7.23 -40.82 -0.30 11.06 16 51 H 0.25 7.99 8.31 -40.82 -0.34 7.65 16 LS Contribution 391.45 15.07 5.90 5.90 Total: -1.00 -39.75 391.45 -10.15 -49.90 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -8.50 Total: 9.23 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -2.55 Total: 1.78 kcal Atomic # 7 Polarization: -76.73 SS G_CDS: -0.02 Total: -76.75 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.05 Total: -9.94 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.02 Total: 19.87 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -39.75 -10.15 -49.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732541137.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.036 kcal (2) G-P(sol) polarization free energy of solvation -39.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds