Wall clock time and date at job start Tue Mar 31 2020 18:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.47447 * 2 1 4 4 C 1.34666 * 126.59623 * 274.69113 * 3 2 1 5 5 N 1.34124 * 108.02262 * 179.87008 * 4 3 2 6 6 C 1.30502 * 109.25523 * 0.40007 * 5 4 3 7 7 C 1.50703 * 125.64950 * 179.77182 * 6 5 4 8 8 C 1.50698 * 109.47227 * 304.97501 * 7 6 5 9 9 O 1.21279 * 120.00070 * 0.02562 * 8 7 6 10 10 N 1.34770 * 119.99764 * 179.97438 * 8 7 6 11 11 C 1.46929 * 120.63447 * 354.83425 * 10 8 7 12 12 C 1.53193 * 108.77611 * 126.36317 * 11 10 8 13 13 C 1.53039 * 109.31262 * 54.63666 * 12 11 10 14 14 C 1.53035 * 109.53786 * 298.63035 * 13 12 11 15 15 H 1.09005 * 109.49857 * 181.35113 * 14 13 12 16 16 C 1.52997 * 109.49874 * 301.41614 * 14 13 12 17 17 C 1.46934 * 120.62859 * 174.54677 * 10 8 7 18 18 H 1.08997 * 109.58558 * 113.84677 * 17 10 8 19 19 C 1.52997 * 109.58802 * 353.42056 * 17 10 8 20 20 N 1.46502 * 109.46685 * 73.34505 * 19 17 10 21 21 C 1.36939 * 119.99939 * 174.77200 * 20 19 17 22 22 H 1.07998 * 119.99911 * 0.02562 * 21 20 19 23 23 C 1.38814 * 120.00333 * 180.02562 * 21 20 19 24 24 N 1.31623 * 119.99674 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00203 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47271 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47298 * 120.00151 * 25 23 21 28 28 H 1.48502 * 109.47117 * 239.99706 * 25 23 21 29 29 N 1.35044 * 108.70114 * 359.75525 * 6 5 4 30 30 H 0.96994 * 126.39809 * 180.02562 * 29 6 5 31 31 H 1.08992 * 109.47513 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47036 * 59.99395 * 1 2 3 33 33 H 1.09003 * 109.47026 * 299.99740 * 1 2 3 34 34 H 1.08995 * 109.47243 * 120.00201 * 2 1 3 35 35 H 1.09003 * 109.47026 * 240.00259 * 2 1 3 36 36 H 1.08000 * 125.98311 * 0.02562 * 4 3 2 37 37 H 1.09000 * 109.46794 * 64.97503 * 7 6 5 38 38 H 1.08998 * 109.47194 * 184.97565 * 7 6 5 39 39 H 1.09000 * 109.58242 * 246.15404 * 11 10 8 40 40 H 1.08994 * 109.58281 * 6.43109 * 11 10 8 41 41 H 1.09004 * 109.49019 * 174.58796 * 12 11 10 42 42 H 1.08997 * 109.49703 * 294.68003 * 12 11 10 43 43 H 1.09000 * 109.46299 * 58.65339 * 13 12 11 44 44 H 1.08998 * 109.45901 * 178.62681 * 13 12 11 45 45 H 1.08994 * 109.47178 * 59.99943 * 16 14 13 46 46 H 1.09002 * 109.47204 * 179.97438 * 16 14 13 47 47 H 1.08999 * 109.47017 * 300.00024 * 16 14 13 48 48 H 1.08996 * 109.47769 * 193.34497 * 19 17 10 49 49 H 1.08996 * 109.47315 * 313.35128 * 19 17 10 50 50 H 0.96995 * 120.00281 * 354.78104 * 20 19 17 51 51 H 0.97001 * 119.99825 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2167 2.2072 -1.0776 5 7 2.6708 3.3952 -0.6515 6 6 2.7830 3.3720 0.6484 7 6 3.2655 4.5113 1.5089 8 6 4.6206 4.9639 1.0295 9 8 5.1430 4.4157 0.0822 10 7 5.2515 5.9786 1.6530 11 6 4.5852 6.7271 2.7275 12 6 5.4879 6.7218 3.9651 13 6 6.8692 7.2612 3.5865 14 6 7.4990 6.3558 2.5256 15 1 8.4925 6.7269 2.2738 16 6 7.6092 4.9305 3.0708 17 6 6.6212 6.3532 1.2753 18 1 6.6185 7.3490 0.8320 19 6 7.1703 5.3414 0.2676 20 7 6.5298 5.5511 -1.0332 21 6 6.9406 4.8305 -2.1228 22 1 7.7366 4.1074 -2.0231 23 6 6.3341 5.0295 -3.3555 24 7 5.3644 5.9111 -3.4771 25 14 6.8941 4.0460 -4.8416 26 1 7.9917 3.1285 -4.4430 27 1 5.7539 3.2547 -5.3698 28 1 7.3823 4.9735 -5.8936 29 7 2.3948 2.1581 1.0950 30 1 2.3758 1.8637 2.0190 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5140 -0.8900 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 2.0291 1.9306 -2.1045 37 1 2.5610 5.3404 1.4424 38 1 3.3387 4.1789 2.5443 39 1 4.4132 7.7540 2.4049 40 1 3.6324 6.2544 2.9655 41 1 5.0497 7.3539 4.7376 42 1 5.5854 5.7030 4.3400 43 1 6.7682 8.2710 3.1886 44 1 7.5060 7.2814 4.4708 45 1 6.6155 4.5594 3.3213 46 1 8.0574 4.2859 2.3147 47 1 8.2330 4.9307 3.9647 48 1 8.2474 5.4756 0.1680 49 1 6.9609 4.3304 0.6168 50 1 5.8148 6.2004 -1.1228 51 1 4.9404 6.0499 -4.3384 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732541137.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:50 Heat of formation + Delta-G solvation = 42.272793 kcal Electronic energy + Delta-G solvation = -31003.037077 eV Core-core repulsion = 27131.968185 eV Total energy + Delta-G solvation = -3871.068892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 7.47 seconds Orbital eigenvalues (eV) -43.02391 -41.48265 -38.46083 -36.40811 -35.03659 -34.53172 -33.60613 -33.33887 -31.88398 -31.69941 -28.65954 -27.64194 -27.16033 -25.60271 -24.27548 -24.15627 -22.81512 -21.93508 -21.67598 -20.57292 -19.50581 -18.77453 -18.27330 -17.65401 -16.88378 -16.68963 -16.11734 -15.95357 -15.72141 -15.56624 -15.28589 -15.04864 -14.90767 -14.83891 -14.53532 -14.42985 -14.02792 -13.93922 -13.79926 -13.60668 -13.27651 -13.19374 -12.94557 -12.88528 -12.80172 -12.53814 -12.43870 -12.33124 -12.06168 -12.02078 -11.95935 -11.78343 -11.57008 -11.20638 -11.14385 -10.87095 -10.78664 -10.59826 -9.78007 -9.26387 -9.09331 -8.54286 -7.77334 -4.94084 1.08011 1.38513 1.43192 1.50828 1.98648 2.13036 2.28005 2.51505 2.63561 3.48095 3.55564 3.74462 3.85296 3.93910 3.98235 4.07982 4.11984 4.17296 4.21860 4.34310 4.40300 4.45444 4.47277 4.51241 4.59695 4.61820 4.74465 4.75194 4.78393 4.85508 4.91284 4.96474 4.98335 5.02119 5.04880 5.07984 5.18505 5.29916 5.34328 5.34714 5.37464 5.41355 5.42894 5.54406 5.63429 5.86421 5.96726 6.42662 6.60397 6.81643 7.36232 7.49364 7.77422 8.33249 8.54387 9.47443 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007309 B = 0.005720 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3830.070094 B = 4893.791962 C = 7948.655629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.041 4.041 3 C -0.004 4.004 4 C -0.070 4.070 5 N -0.504 5.504 6 C 0.207 3.793 7 C -0.041 4.041 8 C 0.467 3.533 9 O -0.483 6.483 10 N -0.611 5.611 11 C 0.101 3.899 12 C -0.128 4.128 13 C -0.108 4.108 14 C -0.094 4.094 15 H 0.076 0.924 16 C -0.136 4.136 17 C 0.156 3.844 18 H 0.048 0.952 19 C 0.172 3.828 20 N -0.698 5.698 21 C -0.205 4.205 22 H 0.053 0.947 23 C -0.080 4.080 24 N -0.965 5.965 25 Si 0.958 3.042 26 H -0.273 1.273 27 H -0.303 1.303 28 H -0.290 1.290 29 N -0.549 5.549 30 H 0.432 0.568 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.151 0.849 37 H 0.122 0.878 38 H 0.144 0.856 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.084 0.916 45 H 0.057 0.943 46 H 0.029 0.971 47 H 0.073 0.927 48 H 0.002 0.998 49 H 0.020 0.980 50 H 0.366 0.634 51 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.637 -4.835 24.862 26.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.080 4.080 3 C -0.121 4.121 4 C -0.218 4.218 5 N -0.223 5.223 6 C -0.057 4.057 7 C -0.082 4.082 8 C 0.252 3.748 9 O -0.354 6.354 10 N -0.348 5.348 11 C -0.021 4.021 12 C -0.166 4.166 13 C -0.146 4.146 14 C -0.114 4.114 15 H 0.095 0.905 16 C -0.193 4.193 17 C 0.052 3.948 18 H 0.066 0.934 19 C 0.045 3.955 20 N -0.338 5.338 21 C -0.338 4.338 22 H 0.071 0.929 23 C -0.271 4.271 24 N -0.618 5.618 25 Si 0.790 3.210 26 H -0.198 1.198 27 H -0.232 1.232 28 H -0.217 1.217 29 N -0.155 5.155 30 H 0.273 0.727 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.168 0.832 37 H 0.140 0.860 38 H 0.162 0.838 39 H 0.083 0.917 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.092 0.908 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.076 0.924 46 H 0.048 0.952 47 H 0.092 0.908 48 H 0.020 0.980 49 H 0.037 0.963 50 H 0.198 0.802 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.042 -4.616 23.701 25.152 hybrid contribution -0.092 -0.904 -1.079 1.411 sum -7.134 -5.520 22.622 24.354 Atomic orbital electron populations 1.21724 0.93297 1.02914 1.01875 1.20097 0.96804 0.86646 1.04443 1.21553 1.07000 0.97131 0.86404 1.22224 1.08492 0.91605 0.99464 1.70298 1.16813 1.24866 1.10290 1.22728 1.04153 0.88298 0.90565 1.20057 0.94888 0.94534 0.98742 1.20827 0.88042 0.82394 0.83565 1.91272 1.65221 1.54626 1.24243 1.47926 1.14511 1.34063 1.38329 1.21995 0.96849 0.96705 0.86550 1.21944 0.94903 1.02880 0.96836 1.21519 0.97048 0.98020 0.97999 1.21364 0.98354 0.97474 0.94184 0.90545 1.21776 1.01869 0.95307 1.00376 1.21124 0.82429 0.96569 0.94704 0.93393 1.20832 0.92618 0.96593 0.85443 1.42247 1.41563 1.45903 1.04116 1.19365 1.12032 1.13879 0.88556 0.92856 1.25263 0.99904 1.01888 1.00054 1.69833 1.29158 1.39740 1.23097 0.85250 0.76790 0.78204 0.80767 1.19791 1.23176 1.21739 1.42923 1.51045 1.11439 1.10068 0.72699 0.89978 0.93516 0.92576 0.89014 0.89524 0.83194 0.85976 0.83781 0.91705 0.87620 0.88171 0.90772 0.91909 0.89782 0.92379 0.95183 0.90832 0.98019 0.96284 0.80230 0.95082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.89 71.98 0.71 -1.46 16 2 C -0.04 -0.77 6.49 29.85 0.19 -0.58 16 3 C 0.00 -0.12 6.49 40.95 0.27 0.15 16 4 C -0.07 -2.79 11.79 83.52 0.98 -1.80 16 5 N -0.50 -23.22 10.58 -188.13 -1.99 -25.22 16 6 C 0.21 7.13 6.96 138.13 0.96 8.09 16 7 C -0.04 -1.09 4.68 29.10 0.14 -0.95 16 8 C 0.47 17.28 7.31 87.66 0.64 17.92 16 9 O -0.48 -24.74 9.29 -3.03 -0.03 -24.77 16 10 N -0.61 -18.26 2.42 -795.82 -1.92 -20.18 16 11 C 0.10 1.82 6.35 86.36 0.55 2.37 16 12 C -0.13 -1.66 5.74 30.67 0.18 -1.48 16 13 C -0.11 -1.77 5.43 30.62 0.17 -1.61 16 14 C -0.09 -2.28 2.76 -10.86 -0.03 -2.31 16 15 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 16 C -0.14 -3.18 8.22 71.98 0.59 -2.59 16 17 C 0.16 5.34 2.59 44.83 0.12 5.46 16 18 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 19 C 0.17 7.96 3.91 86.38 0.34 8.30 16 20 N -0.70 -40.92 3.20 -343.46 -1.10 -42.02 16 21 C -0.21 -13.34 9.73 84.03 0.82 -12.52 16 22 H 0.05 3.44 7.83 -2.91 -0.02 3.42 16 23 C -0.08 -5.29 5.50 84.86 0.47 -4.82 16 24 N -0.97 -67.45 13.06 21.65 0.28 -67.17 16 25 Si 0.96 53.55 29.55 68.60 2.03 55.58 16 26 H -0.27 -14.48 7.11 99.48 0.71 -13.77 16 27 H -0.30 -17.20 7.11 99.48 0.71 -16.49 16 28 H -0.29 -15.70 7.11 99.48 0.71 -14.99 16 29 N -0.55 -14.02 6.15 -174.59 -1.07 -15.09 16 30 H 0.43 6.74 8.96 -92.71 -0.83 5.91 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 0.86 8.14 -2.38 -0.02 0.85 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.15 5.91 8.06 -2.91 -0.02 5.89 16 37 H 0.12 2.85 7.73 -2.39 -0.02 2.83 16 38 H 0.14 2.19 7.91 -2.39 -0.02 2.17 16 39 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.11 1.31 5.92 -2.39 -0.01 1.30 16 41 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.07 0.94 6.34 -2.39 -0.02 0.92 16 43 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.06 1.32 5.97 -2.39 -0.01 1.30 16 46 H 0.03 0.87 6.63 -2.39 -0.02 0.85 16 47 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.00 0.10 8.08 -2.39 -0.02 0.08 16 49 H 0.02 0.97 5.35 -2.39 -0.01 0.96 16 50 H 0.37 23.22 7.23 -92.71 -0.67 22.54 16 51 H 0.24 16.36 8.31 -92.71 -0.77 15.59 16 Total: -1.00 -96.53 391.45 2.72 -93.81 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: -0.56 Total: 32.89 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 7.09 Total: 12.17 kcal Atomic # 7 Polarization: -163.87 SS G_CDS: -5.80 Total: -169.68 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.03 Total: -24.77 kcal Atomic # 14 Polarization: 53.55 SS G_CDS: 2.03 Total: 55.58 kcal Total: -96.53 2.72 -93.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732541137.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.079 kcal (2) G-P(sol) polarization free energy of solvation -96.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.47 seconds