Wall clock time and date at job start Tue Mar 31 2020 19:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46944 * 2 1 4 4 C 1.50700 * 109.47068 * 179.97438 * 3 2 1 5 5 N 1.30456 * 125.98696 * 270.04077 * 4 3 2 6 6 N 1.39933 * 108.89698 * 179.97438 * 5 4 3 7 7 H 0.97001 * 125.75766 * 179.97438 * 6 5 4 8 8 C 1.34266 * 108.49271 * 359.74855 * 6 5 4 9 9 C 1.38048 * 107.41512 * 0.39719 * 8 6 5 10 10 C 1.47428 * 126.41504 * 179.86693 * 9 8 6 11 11 O 1.21604 * 119.99900 * 179.68656 * 10 9 8 12 12 N 1.34771 * 119.99878 * 359.69075 * 10 9 8 13 13 C 1.46499 * 120.00122 * 180.27293 * 12 10 9 14 14 C 1.53000 * 109.47435 * 179.72557 * 13 12 10 15 15 C 1.53002 * 109.49362 * 299.93507 * 14 13 12 16 16 C 1.53040 * 109.49927 * 179.83900 * 14 13 12 17 17 C 1.53034 * 109.53917 * 178.68361 * 16 14 13 18 18 C 1.53186 * 109.31433 * 61.36279 * 17 16 14 19 19 N 1.46927 * 108.77726 * 305.36324 * 18 17 16 20 20 C 1.36929 * 120.63550 * 233.62983 * 19 18 17 21 21 H 1.08009 * 119.99924 * 27.67149 * 20 19 18 22 22 C 1.38813 * 120.00301 * 207.66933 * 20 19 18 23 23 N 1.31615 * 119.99702 * 17.36208 * 22 20 19 24 24 Si 1.86796 * 120.00243 * 197.35937 * 22 20 19 25 25 H 1.48502 * 109.47117 * 60.00102 * 24 22 20 26 26 H 1.48501 * 109.47435 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47340 * 300.00550 * 24 22 20 28 28 C 1.46928 * 118.73432 * 53.60867 * 19 18 17 29 29 H 1.08998 * 109.46990 * 60.00032 * 1 2 3 30 30 H 1.09000 * 109.46714 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47110 * 299.99996 * 1 2 3 32 32 H 1.08997 * 109.47110 * 240.00004 * 2 1 3 33 33 H 1.08998 * 109.46990 * 119.99968 * 2 1 3 34 34 H 1.08997 * 109.47214 * 60.00068 * 3 2 1 35 35 H 1.08998 * 109.47251 * 299.99808 * 3 2 1 36 36 H 1.07994 * 126.29398 * 180.24177 * 8 6 5 37 37 H 0.97004 * 119.99968 * 359.97438 * 12 10 9 38 38 H 1.09009 * 109.46841 * 299.72694 * 13 12 10 39 39 H 1.08994 * 109.47318 * 59.72313 * 13 12 10 40 40 H 1.08997 * 109.47498 * 60.00003 * 15 14 13 41 41 H 1.09003 * 109.46478 * 180.02562 * 15 14 13 42 42 H 1.08998 * 109.47031 * 299.99485 * 15 14 13 43 43 H 1.09001 * 109.45979 * 298.70345 * 16 14 13 44 44 H 1.09006 * 109.45855 * 58.65817 * 16 14 13 45 45 H 1.09009 * 109.49734 * 301.41047 * 17 16 14 46 46 H 1.08997 * 109.52548 * 181.33286 * 17 16 14 47 47 H 1.09005 * 109.58669 * 185.57704 * 18 17 16 48 48 H 1.08997 * 109.58548 * 65.15265 * 18 17 16 49 49 H 0.97010 * 119.99764 * 179.97438 * 23 22 20 50 50 H 1.08998 * 109.58736 * 186.60074 * 28 19 18 51 51 H 1.09003 * 109.58644 * 66.17716 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3131 1.4420 1.0565 6 7 5.6508 1.4416 0.6459 7 1 6.4237 1.4415 1.2320 8 6 5.6843 1.4364 -0.6964 9 6 4.3778 1.4426 -1.1422 10 6 3.9327 1.4428 -2.5477 11 8 2.7451 1.4428 -2.8094 12 7 4.8420 1.4428 -3.5425 13 6 4.3997 1.4490 -4.9391 14 6 5.6210 1.4546 -5.8608 15 6 6.4609 2.7040 -5.5879 16 6 5.1596 1.4570 -7.3200 17 6 6.3800 1.4957 -8.2426 18 6 7.2329 0.2452 -8.0072 19 7 7.5599 0.1580 -6.5775 20 6 8.8600 0.0369 -6.1652 21 1 9.6587 0.4355 -6.7732 22 6 9.1516 -0.5982 -4.9657 23 7 8.2530 -1.3729 -4.3960 24 14 10.8191 -0.3534 -4.1604 25 1 11.0173 1.0876 -3.8608 26 1 10.8792 -1.1346 -2.8989 27 1 11.8869 -0.8187 -5.0816 28 6 6.4653 0.2036 -5.5985 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 6.5703 1.4312 -1.3137 37 1 5.7893 1.4431 -3.3337 38 1 3.8010 0.5593 -5.1346 39 1 3.7993 2.3392 -5.1262 40 1 6.7902 2.7007 -4.5489 41 1 7.3305 2.7077 -6.2451 42 1 5.8601 3.5938 -5.7759 43 1 4.5819 0.5546 -7.5197 44 1 4.5381 2.3337 -7.5029 45 1 6.9715 2.3855 -8.0264 46 1 6.0508 1.5214 -9.2813 47 1 8.1523 0.3152 -8.5887 48 1 6.6738 -0.6405 -8.3089 49 1 8.4568 -1.8171 -3.5580 50 1 6.8780 0.2461 -4.5905 51 1 5.8435 -0.6855 -5.7038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733462048.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:21 Heat of formation + Delta-G solvation = 32.234546 kcal Electronic energy + Delta-G solvation = -30293.515102 eV Core-core repulsion = 26422.010919 eV Total energy + Delta-G solvation = -3871.504183 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.40157 -39.29946 -38.04099 -35.30653 -34.58956 -33.21169 -31.61715 -31.55006 -30.21367 -29.78474 -27.13137 -26.52979 -25.59232 -25.26310 -22.94602 -22.15038 -21.88748 -20.68172 -19.99264 -19.50969 -18.54565 -17.74948 -16.74891 -16.21315 -15.41791 -15.23029 -15.04177 -14.88898 -14.40789 -14.36658 -14.04783 -13.92441 -13.62961 -13.39495 -13.29987 -13.09087 -12.94232 -12.73446 -12.26791 -12.20625 -11.95778 -11.60634 -11.50333 -11.34532 -11.24003 -11.00929 -10.97958 -10.89171 -10.67338 -10.55127 -10.46153 -10.19648 -10.13871 -9.85374 -9.67711 -9.53359 -9.43091 -9.39511 -8.86985 -8.56201 -8.48997 -6.71632 -5.86195 -3.27675 1.55272 2.20554 2.67573 3.28074 3.34561 3.36579 3.64077 3.72555 4.40899 4.47503 4.68342 5.05889 5.12184 5.14524 5.21833 5.26165 5.35640 5.42016 5.49586 5.51892 5.57028 5.58979 5.78298 5.78748 5.84331 5.91691 5.99163 6.05208 6.06602 6.11731 6.17329 6.28435 6.31302 6.37570 6.40454 6.43229 6.50159 6.54347 6.62136 6.78700 6.84282 6.90589 6.95859 7.03084 7.06167 7.26821 7.51477 7.54950 7.71551 7.95275 8.36739 8.63417 9.13956 9.77602 10.35495 11.21374 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011394 B = 0.003814 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.915841 B = 7339.929572 C = 8957.017473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C -0.043 4.043 4 C 0.136 3.864 5 N -0.303 5.303 6 N -0.463 5.463 7 H 0.443 0.557 8 C 0.110 3.890 9 C -0.283 4.283 10 C 0.591 3.409 11 O -0.550 6.550 12 N -0.716 5.716 13 C 0.139 3.861 14 C -0.103 4.103 15 C -0.125 4.125 16 C -0.095 4.095 17 C -0.135 4.135 18 C 0.143 3.857 19 N -0.589 5.589 20 C -0.247 4.247 21 H 0.064 0.936 22 C 0.003 3.997 23 N -0.901 5.901 24 Si 0.896 3.104 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.283 1.283 28 C 0.187 3.813 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.187 0.813 37 H 0.401 0.599 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.043 0.957 41 H 0.071 0.929 42 H 0.036 0.964 43 H 0.056 0.944 44 H 0.048 0.952 45 H 0.061 0.939 46 H 0.049 0.951 47 H 0.052 0.948 48 H 0.017 0.983 49 H 0.253 0.747 50 H 0.087 0.913 51 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.965 6.915 5.767 12.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.082 4.082 4 C -0.032 4.032 5 N -0.126 5.126 6 N -0.167 5.167 7 H 0.287 0.713 8 C -0.043 4.043 9 C -0.298 4.298 10 C 0.378 3.622 11 O -0.429 6.429 12 N -0.367 5.367 13 C 0.015 3.985 14 C -0.105 4.105 15 C -0.182 4.182 16 C -0.133 4.133 17 C -0.174 4.174 18 C 0.017 3.983 19 N -0.311 5.311 20 C -0.377 4.377 21 H 0.082 0.918 22 C -0.196 4.196 23 N -0.546 5.546 24 Si 0.726 3.274 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.209 1.209 28 C 0.060 3.940 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.204 0.796 37 H 0.237 0.763 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.035 0.965 49 H 0.063 0.937 50 H 0.105 0.895 51 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -8.729 6.802 6.979 13.082 hybrid contribution 2.075 -0.048 -0.028 2.076 sum -6.654 6.753 6.950 11.755 Atomic orbital electron populations 1.21730 0.95477 1.01552 1.01792 1.21370 0.95813 0.95530 1.02303 1.20196 0.85407 0.98628 1.03948 1.22435 0.96977 0.95022 0.88740 1.77112 0.86276 1.26625 1.22551 1.46081 1.07737 1.57374 1.05518 0.71256 1.23289 0.99374 0.96058 0.85607 1.20348 0.91959 1.22624 0.94866 1.17190 0.85638 0.75886 0.83461 1.90701 1.16292 1.51599 1.84345 1.45900 1.09821 1.74796 1.06201 1.21337 0.96465 1.01230 0.79455 1.21538 0.94911 0.99941 0.94139 1.21712 1.00028 0.95257 1.01219 1.21341 0.97254 1.00549 0.94171 1.22042 0.97244 1.00784 0.97343 1.20933 0.96530 0.93762 0.87112 1.43990 1.03132 1.84842 0.99139 1.19140 0.83631 1.30090 1.04833 0.91816 1.24986 0.97228 0.96885 1.00478 1.70049 1.34489 1.30565 1.19507 0.86472 0.84457 0.77579 0.78915 1.21101 1.21732 1.20891 1.20782 0.87623 0.90111 0.95445 0.92273 0.92809 0.92994 0.91267 0.92403 0.90907 0.88010 0.79585 0.76307 0.91864 0.92311 0.93824 0.91054 0.94508 0.92550 0.93373 0.91991 0.93233 0.92988 0.96541 0.93693 0.89470 0.96433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 37.16 0.37 -1.14 16 2 C -0.11 -1.37 5.92 -26.73 -0.16 -1.53 16 3 C -0.04 -0.55 5.25 -27.88 -0.15 -0.69 16 4 C 0.14 1.97 6.52 -82.02 -0.53 1.44 16 5 N -0.30 -4.21 12.63 33.90 0.43 -3.78 16 6 N -0.46 -5.20 7.29 30.85 0.22 -4.98 16 7 H 0.44 3.40 8.96 -182.72 -1.64 1.76 16 8 C 0.11 1.33 11.52 -16.56 -0.19 1.14 16 9 C -0.28 -4.18 6.13 -105.06 -0.64 -4.82 16 10 C 0.59 9.76 7.81 -12.52 -0.10 9.66 16 11 O -0.55 -10.21 14.92 5.27 0.08 -10.13 16 12 N -0.72 -11.31 4.98 -61.38 -0.31 -11.62 16 13 C 0.14 2.25 4.57 -4.04 -0.02 2.24 16 14 C -0.10 -1.75 0.53 -154.39 -0.08 -1.83 16 15 C -0.12 -2.03 7.82 37.16 0.29 -1.74 16 16 C -0.09 -1.50 4.71 -26.69 -0.13 -1.63 16 17 C -0.14 -2.19 5.74 -26.62 -0.15 -2.34 16 18 C 0.14 2.83 6.52 -3.71 -0.02 2.80 16 19 N -0.59 -13.52 2.43 -172.32 -0.42 -13.94 16 20 C -0.25 -6.26 9.58 -15.06 -0.14 -6.41 16 21 H 0.06 1.61 7.89 -52.48 -0.41 1.20 16 22 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 23 N -0.90 -24.06 11.19 55.49 0.62 -23.44 16 24 Si 0.90 20.06 29.59 -169.99 -5.03 15.03 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 28 C 0.19 3.99 3.73 -3.71 -0.01 3.97 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.10 1.42 6.55 -51.93 -0.34 1.08 16 36 H 0.19 1.85 7.46 -52.49 -0.39 1.46 16 37 H 0.40 6.14 5.14 -40.82 -0.21 5.93 16 38 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.04 0.69 6.87 -51.93 -0.36 0.34 16 41 H 0.07 1.29 5.97 -51.93 -0.31 0.98 16 42 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.06 1.02 6.34 -51.92 -0.33 0.69 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 50 H 0.09 2.01 4.94 -51.93 -0.26 1.75 16 51 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 395.86 15.07 5.97 5.97 Total: -1.00 -30.15 395.86 -9.91 -40.05 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -9.71 Total: 7.75 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -1.76 Total: -0.91 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.55 Total: -57.76 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.15 -9.91 -40.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733462048.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.289 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds