Wall clock time and date at job start Tue Mar 31 2020 19:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46944 * 2 1 4 4 C 1.50700 * 109.47068 * 179.97438 * 3 2 1 5 5 N 1.30456 * 125.98696 * 270.04077 * 4 3 2 6 6 N 1.39933 * 108.89698 * 179.97438 * 5 4 3 7 7 H 0.97001 * 125.75766 * 179.97438 * 6 5 4 8 8 C 1.34266 * 108.49271 * 359.74855 * 6 5 4 9 9 C 1.38048 * 107.41512 * 0.39719 * 8 6 5 10 10 C 1.47428 * 126.41504 * 179.86693 * 9 8 6 11 11 O 1.21604 * 119.99900 * 179.68656 * 10 9 8 12 12 N 1.34771 * 119.99878 * 359.69075 * 10 9 8 13 13 C 1.46499 * 120.00122 * 180.27293 * 12 10 9 14 14 C 1.53000 * 109.47435 * 179.72557 * 13 12 10 15 15 C 1.53002 * 109.49362 * 299.93507 * 14 13 12 16 16 C 1.53040 * 109.49927 * 179.83900 * 14 13 12 17 17 C 1.53034 * 109.53917 * 178.68361 * 16 14 13 18 18 C 1.53186 * 109.31433 * 61.36279 * 17 16 14 19 19 N 1.46927 * 108.77726 * 305.36324 * 18 17 16 20 20 C 1.36929 * 120.63550 * 233.62983 * 19 18 17 21 21 H 1.08009 * 119.99924 * 27.67149 * 20 19 18 22 22 C 1.38813 * 120.00301 * 207.66933 * 20 19 18 23 23 N 1.31615 * 119.99702 * 17.36208 * 22 20 19 24 24 Si 1.86796 * 120.00243 * 197.35937 * 22 20 19 25 25 H 1.48502 * 109.47117 * 60.00102 * 24 22 20 26 26 H 1.48501 * 109.47435 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47340 * 300.00550 * 24 22 20 28 28 C 1.46928 * 118.73432 * 53.60867 * 19 18 17 29 29 H 1.08998 * 109.46990 * 60.00032 * 1 2 3 30 30 H 1.09000 * 109.46714 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47110 * 299.99996 * 1 2 3 32 32 H 1.08997 * 109.47110 * 240.00004 * 2 1 3 33 33 H 1.08998 * 109.46990 * 119.99968 * 2 1 3 34 34 H 1.08997 * 109.47214 * 60.00068 * 3 2 1 35 35 H 1.08998 * 109.47251 * 299.99808 * 3 2 1 36 36 H 1.07994 * 126.29398 * 180.24177 * 8 6 5 37 37 H 0.97004 * 119.99968 * 359.97438 * 12 10 9 38 38 H 1.09009 * 109.46841 * 299.72694 * 13 12 10 39 39 H 1.08994 * 109.47318 * 59.72313 * 13 12 10 40 40 H 1.08997 * 109.47498 * 60.00003 * 15 14 13 41 41 H 1.09003 * 109.46478 * 180.02562 * 15 14 13 42 42 H 1.08998 * 109.47031 * 299.99485 * 15 14 13 43 43 H 1.09001 * 109.45979 * 298.70345 * 16 14 13 44 44 H 1.09006 * 109.45855 * 58.65817 * 16 14 13 45 45 H 1.09009 * 109.49734 * 301.41047 * 17 16 14 46 46 H 1.08997 * 109.52548 * 181.33286 * 17 16 14 47 47 H 1.09005 * 109.58669 * 185.57704 * 18 17 16 48 48 H 1.08997 * 109.58548 * 65.15265 * 18 17 16 49 49 H 0.97010 * 119.99764 * 179.97438 * 23 22 20 50 50 H 1.08998 * 109.58736 * 186.60074 * 28 19 18 51 51 H 1.09003 * 109.58644 * 66.17716 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3131 1.4420 1.0565 6 7 5.6508 1.4416 0.6459 7 1 6.4237 1.4415 1.2320 8 6 5.6843 1.4364 -0.6964 9 6 4.3778 1.4426 -1.1422 10 6 3.9327 1.4428 -2.5477 11 8 2.7451 1.4428 -2.8094 12 7 4.8420 1.4428 -3.5425 13 6 4.3997 1.4490 -4.9391 14 6 5.6210 1.4546 -5.8608 15 6 6.4609 2.7040 -5.5879 16 6 5.1596 1.4570 -7.3200 17 6 6.3800 1.4957 -8.2426 18 6 7.2329 0.2452 -8.0072 19 7 7.5599 0.1580 -6.5775 20 6 8.8600 0.0369 -6.1652 21 1 9.6587 0.4355 -6.7732 22 6 9.1516 -0.5982 -4.9657 23 7 8.2530 -1.3729 -4.3960 24 14 10.8191 -0.3534 -4.1604 25 1 11.0173 1.0876 -3.8608 26 1 10.8792 -1.1346 -2.8989 27 1 11.8869 -0.8187 -5.0816 28 6 6.4653 0.2036 -5.5985 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 6.5703 1.4312 -1.3137 37 1 5.7893 1.4431 -3.3337 38 1 3.8010 0.5593 -5.1346 39 1 3.7993 2.3392 -5.1262 40 1 6.7902 2.7007 -4.5489 41 1 7.3305 2.7077 -6.2451 42 1 5.8601 3.5938 -5.7759 43 1 4.5819 0.5546 -7.5197 44 1 4.5381 2.3337 -7.5029 45 1 6.9715 2.3855 -8.0264 46 1 6.0508 1.5214 -9.2813 47 1 8.1523 0.3152 -8.5887 48 1 6.6738 -0.6405 -8.3089 49 1 8.4568 -1.8171 -3.5580 50 1 6.8780 0.2461 -4.5905 51 1 5.8435 -0.6855 -5.7038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733462048.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:20 Heat of formation + Delta-G solvation = 14.742112 kcal Electronic energy + Delta-G solvation = -30294.273631 eV Core-core repulsion = 26422.010919 eV Total energy + Delta-G solvation = -3872.262712 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.45569 -40.67200 -39.44854 -36.44062 -35.96565 -34.82291 -33.07101 -32.57316 -31.71092 -31.12043 -28.11370 -27.89476 -27.25953 -26.77102 -24.20704 -23.66332 -22.89079 -22.11001 -21.19552 -20.63929 -19.77538 -19.12352 -18.45967 -17.47524 -16.88632 -16.47065 -16.36872 -16.03844 -15.79479 -15.57738 -15.38208 -15.32309 -14.91842 -14.88642 -14.71728 -14.29857 -14.19752 -13.91976 -13.74692 -13.67524 -13.05027 -12.98860 -12.88511 -12.66928 -12.52658 -12.46064 -12.24102 -12.16047 -12.13648 -12.01177 -11.81529 -11.67897 -11.56030 -11.36284 -11.16310 -10.92611 -10.76010 -10.53480 -10.46307 -10.08297 -9.70242 -8.57868 -7.79219 -5.23756 0.50897 1.08191 1.50121 1.52753 1.58791 1.76205 2.39045 2.49818 2.56248 3.32391 3.43838 3.66562 3.71537 4.00880 4.08166 4.10324 4.10679 4.16544 4.22282 4.36446 4.39841 4.42582 4.58502 4.60230 4.61658 4.80130 4.82532 4.85248 4.87469 4.90081 5.01298 5.04506 5.08930 5.13885 5.17074 5.21664 5.34532 5.35017 5.38999 5.43266 5.45030 5.47139 5.53348 5.62541 5.67639 5.77321 5.83739 6.20613 6.45905 6.46747 6.70028 7.22690 7.35792 7.93604 8.46835 9.25716 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011394 B = 0.003814 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.915841 B = 7339.929572 C = 8957.017473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C -0.040 4.040 4 C 0.126 3.874 5 N -0.317 5.317 6 N -0.447 5.447 7 H 0.459 0.541 8 C 0.126 3.874 9 C -0.313 4.313 10 C 0.590 3.410 11 O -0.576 6.576 12 N -0.713 5.713 13 C 0.146 3.854 14 C -0.091 4.091 15 C -0.118 4.118 16 C -0.095 4.095 17 C -0.123 4.123 18 C 0.136 3.864 19 N -0.604 5.604 20 C -0.257 4.257 21 H 0.061 0.939 22 C -0.040 4.040 23 N -0.929 5.929 24 Si 0.956 3.044 25 H -0.273 1.273 26 H -0.295 1.295 27 H -0.287 1.287 28 C 0.199 3.801 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.210 0.790 37 H 0.403 0.597 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.042 0.958 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.050 0.950 48 H 0.005 0.995 49 H 0.249 0.751 50 H 0.069 0.931 51 H -0.021 1.021 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.692 8.643 6.106 13.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 C -0.079 4.079 4 C -0.042 4.042 5 N -0.139 5.139 6 N -0.153 5.153 7 H 0.308 0.692 8 C -0.028 4.028 9 C -0.328 4.328 10 C 0.378 3.622 11 O -0.458 6.458 12 N -0.364 5.364 13 C 0.022 3.978 14 C -0.093 4.093 15 C -0.175 4.175 16 C -0.133 4.133 17 C -0.162 4.162 18 C 0.010 3.990 19 N -0.327 5.327 20 C -0.387 4.387 21 H 0.079 0.921 22 C -0.236 4.236 23 N -0.575 5.575 24 Si 0.785 3.215 25 H -0.199 1.199 26 H -0.221 1.221 27 H -0.213 1.213 28 C 0.073 3.927 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.226 0.774 37 H 0.240 0.760 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.096 0.904 45 H 0.083 0.917 46 H 0.096 0.904 47 H 0.069 0.931 48 H 0.023 0.977 49 H 0.058 0.942 50 H 0.087 0.913 51 H -0.003 1.003 Dipole moment (debyes) X Y Z Total from point charges -8.439 8.549 7.318 14.066 hybrid contribution 2.042 -0.652 -0.176 2.151 sum -6.396 7.897 7.142 12.421 Atomic orbital electron populations 1.21703 0.93783 1.02264 1.02362 1.21312 0.97285 0.94956 1.00995 1.20190 0.84893 0.98857 1.03998 1.22668 0.97712 0.95039 0.88779 1.77065 0.87216 1.27093 1.22542 1.46112 1.07669 1.55922 1.05551 0.69246 1.23556 0.99180 0.94054 0.86020 1.20340 0.93301 1.25097 0.94082 1.17443 0.85295 0.75228 0.84212 1.90678 1.17315 1.52935 1.84849 1.45862 1.09878 1.74648 1.06025 1.21239 0.95954 1.01072 0.79584 1.21342 0.94492 0.98028 0.95422 1.21631 0.99508 0.95532 1.00837 1.21373 0.97407 1.01651 0.92896 1.21913 0.96606 0.98534 0.99110 1.21098 0.97131 0.95302 0.85461 1.44231 1.02796 1.84966 1.00663 1.19395 0.84739 1.29576 1.04980 0.92082 1.25594 1.00151 0.96862 1.00996 1.70202 1.36121 1.31606 1.19614 0.85528 0.80664 0.77793 0.77524 1.19879 1.22108 1.21337 1.20548 0.87099 0.90739 0.94318 0.92810 0.92051 0.91275 0.93948 0.92203 0.89244 0.89390 0.77381 0.76010 0.93496 0.90921 0.93870 0.92633 0.92013 0.93191 0.90382 0.91669 0.90409 0.93142 0.97675 0.94191 0.91316 1.00337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.91 71.98 0.71 -2.13 16 2 C -0.11 -2.64 5.92 30.60 0.18 -2.46 16 3 C -0.04 -1.03 5.25 29.85 0.16 -0.88 16 4 C 0.13 3.60 6.52 43.51 0.28 3.88 16 5 N -0.32 -8.43 12.63 -46.67 -0.59 -9.02 16 6 N -0.45 -9.30 7.29 -56.31 -0.41 -9.71 16 7 H 0.46 6.05 8.96 -213.43 -1.91 4.14 16 8 C 0.13 2.91 11.52 84.28 0.97 3.88 16 9 C -0.31 -9.17 6.13 -20.15 -0.12 -9.29 16 10 C 0.59 19.61 7.81 86.67 0.68 20.28 16 11 O -0.58 -21.80 14.92 -4.04 -0.06 -21.86 16 12 N -0.71 -22.44 4.98 -466.37 -2.32 -24.77 16 13 C 0.15 4.65 4.57 86.38 0.39 5.04 16 14 C -0.09 -3.00 0.53 -52.10 -0.03 -3.03 16 15 C -0.12 -3.60 7.82 71.98 0.56 -3.04 16 16 C -0.10 -2.82 4.71 30.62 0.14 -2.68 16 17 C -0.12 -3.72 5.74 30.67 0.18 -3.55 16 18 C 0.14 5.33 6.52 86.36 0.56 5.89 16 19 N -0.60 -27.96 2.43 -699.10 -1.70 -29.66 16 20 C -0.26 -13.06 9.58 84.04 0.81 -12.26 16 21 H 0.06 3.08 7.89 -2.91 -0.02 3.06 16 22 C -0.04 -2.06 4.91 84.86 0.42 -1.65 16 23 N -0.93 -50.49 11.19 21.65 0.24 -50.25 16 24 Si 0.96 41.13 29.59 68.60 2.03 43.16 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 27 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 28 C 0.20 8.65 3.73 86.36 0.32 8.97 16 29 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 35 H 0.09 2.51 6.55 -2.39 -0.02 2.49 16 36 H 0.21 3.77 7.46 -2.91 -0.02 3.75 16 37 H 0.40 12.23 5.14 -92.71 -0.48 11.76 16 38 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.04 1.30 6.87 -2.39 -0.02 1.29 16 41 H 0.05 1.90 5.97 -2.39 -0.01 1.88 16 42 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 45 H 0.06 1.97 6.34 -2.38 -0.02 1.96 16 46 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.05 1.95 7.93 -2.38 -0.02 1.93 16 48 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 49 H 0.25 13.19 8.31 -92.70 -0.77 12.42 16 50 H 0.07 3.23 4.94 -2.39 -0.01 3.22 16 51 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 Total: -1.00 -65.77 395.86 1.95 -63.82 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: -1.45 Total: 31.29 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 6.22 Total: 6.99 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -4.78 Total: -123.40 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.06 Total: -21.86 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -65.77 1.95 -63.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733462048.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.561 kcal (2) G-P(sol) polarization free energy of solvation -65.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds