Wall clock time and date at job start Tue Mar 31 2020 18:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50709 * 109.47466 * 2 1 4 4 N 1.30489 * 125.64910 * 270.00468 * 3 2 1 5 5 C 1.34128 * 109.25903 * 179.97438 * 4 3 2 6 6 C 1.34670 * 108.01714 * 0.02562 * 5 4 3 7 7 N 1.35043 * 125.64516 * 89.99518 * 3 2 1 8 8 C 1.46500 * 126.40260 * 0.26811 * 7 3 2 9 9 H 1.09000 * 109.46976 * 359.71278 * 8 7 3 10 10 C 1.52997 * 109.46964 * 239.71271 * 8 7 3 11 11 C 1.52996 * 109.47107 * 119.70835 * 8 7 3 12 12 C 1.50701 * 109.47229 * 185.00037 * 11 8 7 13 13 O 1.21277 * 119.99602 * 0.02562 * 12 11 8 14 14 N 1.34774 * 119.99946 * 180.02562 * 12 11 8 15 15 C 1.46503 * 119.99947 * 179.97438 * 14 12 11 16 16 C 1.52993 * 109.47148 * 180.19457 * 15 14 12 17 17 N 1.46500 * 112.85382 * 292.10396 * 16 15 14 18 18 C 1.36941 * 119.99704 * 294.86686 * 17 16 15 19 19 H 1.08002 * 119.99922 * 353.76623 * 18 17 16 20 20 C 1.38814 * 119.99638 * 173.76920 * 18 17 16 21 21 N 1.31613 * 120.00194 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99699 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47344 * 59.99733 * 22 20 18 24 24 H 1.48506 * 109.47184 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47323 * 299.99582 * 22 20 18 26 26 C 1.53785 * 113.61361 * 160.79405 * 16 15 14 27 27 C 1.53784 * 87.08309 * 220.01996 * 26 16 15 28 28 C 1.53782 * 113.61320 * 63.30156 * 16 15 14 29 29 H 1.08997 * 109.46652 * 300.00020 * 1 2 3 30 30 H 1.08996 * 109.46784 * 59.99624 * 1 2 3 31 31 H 1.08993 * 109.46837 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47372 * 240.00008 * 2 1 3 33 33 H 1.09003 * 109.47305 * 119.99982 * 2 1 3 34 34 H 1.08003 * 125.99437 * 179.97438 * 5 4 3 35 35 H 1.08001 * 126.59626 * 180.02562 * 6 5 4 36 36 H 1.09008 * 109.46782 * 180.02562 * 10 8 7 37 37 H 1.09002 * 109.46806 * 299.99599 * 10 8 7 38 38 H 1.08995 * 109.47697 * 60.00179 * 10 8 7 39 39 H 1.08995 * 109.47633 * 305.00663 * 11 8 7 40 40 H 1.09010 * 109.47218 * 65.00074 * 11 8 7 41 41 H 0.96995 * 120.00245 * 359.97438 * 14 12 11 42 42 H 1.08998 * 109.47144 * 300.19876 * 15 14 12 43 43 H 1.09004 * 109.47077 * 60.19377 * 15 14 12 44 44 H 0.96999 * 120.00265 * 114.86846 * 17 16 15 45 45 H 0.97003 * 119.99731 * 180.02562 * 21 20 18 46 46 H 1.09001 * 113.61551 * 334.57660 * 26 16 15 47 47 H 1.09009 * 113.61143 * 105.47129 * 26 16 15 48 48 H 1.09001 * 113.61174 * 270.88485 * 27 26 16 49 49 H 1.08994 * 113.61044 * 139.98111 * 27 26 16 50 50 H 1.09004 * 113.61271 * 254.52289 * 28 16 15 51 51 H 1.08993 * 113.61563 * 25.43119 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2859 2.1379 -1.0604 5 6 2.7144 3.3512 -0.6819 6 6 2.7275 3.3872 0.6643 7 7 2.2947 2.1629 1.0974 8 6 2.1493 1.7354 2.4911 9 1 1.7851 0.7084 2.5200 10 6 1.1516 2.6505 3.2037 11 6 3.5063 1.8152 3.1933 12 6 3.3830 1.2604 4.5890 13 8 2.3151 0.8419 4.9830 14 7 4.4596 1.2292 5.3993 15 6 4.3397 0.6904 6.7563 16 6 5.6954 0.7752 7.4603 17 7 6.6954 -0.1241 6.8793 18 6 6.5225 -1.4804 6.9547 19 1 5.7037 -1.8894 7.5281 20 6 7.3996 -2.3296 6.2941 21 7 8.3971 -1.8312 5.5950 22 14 7.1634 -4.1798 6.3964 23 1 5.8321 -4.5400 5.8457 24 1 8.2242 -4.8586 5.6094 25 1 7.2457 -4.6118 7.8147 26 6 5.6004 0.6862 8.9926 27 6 6.6863 1.7739 9.0446 28 6 6.2000 2.2149 7.6539 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.9998 4.1577 -1.3411 35 1 3.0219 4.2218 1.2833 36 1 1.0437 2.3327 4.2408 37 1 1.5158 3.6775 3.1748 38 1 0.1848 2.5936 2.7035 39 1 4.2394 1.2335 2.6345 40 1 3.8291 2.8552 3.2429 41 1 5.3137 1.5636 5.0840 42 1 3.6039 1.2701 7.3137 43 1 4.0203 -0.3506 6.7070 44 1 7.4800 0.2412 6.4413 45 1 9.0099 -2.4247 5.1331 46 1 4.6385 1.0101 9.3900 47 1 5.9242 -0.2737 9.3952 48 1 7.7016 1.3774 9.0467 49 1 6.5203 2.5197 9.8219 50 1 7.0081 2.4892 6.9756 51 1 5.4021 2.9567 7.6853 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733715258.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:14 Heat of formation + Delta-G solvation = 43.928080 kcal Electronic energy + Delta-G solvation = -29460.124882 eV Core-core repulsion = 25589.127769 eV Total energy + Delta-G solvation = -3870.997113 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.26725 -39.82277 -38.68181 -35.76115 -34.04026 -33.92508 -33.34076 -30.99365 -30.12752 -28.74555 -28.67288 -26.67532 -25.37489 -24.07925 -23.88539 -23.15758 -21.82328 -21.09737 -20.07723 -19.34530 -18.30174 -17.54005 -17.21671 -16.52222 -15.83874 -15.63106 -15.42183 -14.95577 -14.94136 -14.45254 -14.31642 -14.17273 -13.82697 -13.70912 -13.56191 -13.28677 -13.26544 -12.98322 -12.79036 -12.45466 -12.31001 -11.94092 -11.81948 -11.74057 -11.62208 -11.40288 -11.30756 -11.18317 -11.07709 -10.89747 -10.44425 -10.32873 -10.19072 -10.06482 -9.80971 -9.74492 -9.61139 -9.52377 -8.95117 -8.64440 -8.41354 -7.12478 -5.89797 -3.20134 1.98103 2.58277 2.78396 3.10431 3.36980 3.42403 3.42898 3.52825 4.28939 4.31319 4.47190 4.57016 4.64848 4.83520 4.95167 5.06003 5.09878 5.10761 5.18216 5.20482 5.23085 5.27116 5.33661 5.36330 5.44812 5.45054 5.52644 5.61369 5.65923 5.70074 5.72936 5.85828 5.93564 6.00189 6.02100 6.03885 6.11062 6.24476 6.29889 6.31156 6.43693 6.62586 6.71919 6.78604 6.87698 6.96450 7.13221 7.62099 7.79355 8.07152 8.28782 8.42981 9.40125 9.93086 10.28181 11.31982 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011121 B = 0.003046 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.115382 B = 9189.013394 C =10455.128460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.043 4.043 3 C 0.211 3.789 4 N -0.494 5.494 5 C -0.032 4.032 6 C -0.056 4.056 7 N -0.447 5.447 8 C 0.147 3.853 9 H 0.111 0.889 10 C -0.163 4.163 11 C -0.153 4.153 12 C 0.516 3.484 13 O -0.551 6.551 14 N -0.700 5.700 15 C 0.120 3.880 16 C 0.174 3.826 17 N -0.699 5.699 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.006 4.006 21 N -0.930 5.930 22 Si 0.904 3.096 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.151 4.151 27 C -0.128 4.128 28 C -0.145 4.145 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.167 0.833 35 H 0.170 0.830 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.402 0.598 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.386 0.614 45 H 0.256 0.744 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.054 0.946 50 H 0.064 0.936 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.314 11.697 -4.701 16.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 C -0.051 4.051 4 N -0.213 5.213 5 C -0.180 4.180 6 C -0.189 4.189 7 N -0.130 5.130 8 C 0.044 3.956 9 H 0.129 0.871 10 C -0.221 4.221 11 C -0.194 4.194 12 C 0.301 3.699 13 O -0.431 6.431 14 N -0.348 5.348 15 C -0.006 4.006 16 C 0.081 3.919 17 N -0.340 5.340 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.203 4.203 21 N -0.578 5.578 22 Si 0.735 3.265 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.191 4.191 27 C -0.166 4.166 28 C -0.183 4.183 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.184 0.816 35 H 0.187 0.813 36 H 0.117 0.883 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.236 0.764 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.221 0.779 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.100 0.900 49 H 0.073 0.927 50 H 0.083 0.917 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.183 10.900 -5.068 17.115 hybrid contribution 0.935 -0.390 0.547 1.151 sum -11.248 10.510 -4.521 16.045 Atomic orbital electron populations 1.21730 0.93953 1.02311 1.02373 1.20002 0.96457 0.87520 1.04207 1.23262 1.03923 0.96583 0.81366 1.70224 1.18482 1.04266 1.28310 1.22237 1.06759 0.96270 0.92751 1.22593 1.09505 0.90146 0.96695 1.45636 1.48518 1.11620 1.07187 1.21170 0.95610 1.01511 0.77306 0.87088 1.22262 0.98058 0.98661 1.03072 1.21987 0.98449 1.04012 0.94910 1.20076 0.84416 0.79075 0.86380 1.90652 1.27578 1.48573 1.76276 1.45762 1.11820 1.62228 1.15040 1.21896 0.98577 0.99080 0.81078 1.20809 0.88890 0.90225 0.92022 1.42060 1.22487 1.02056 1.67408 1.19046 1.10561 0.82117 1.25295 0.91194 1.24721 0.98028 0.97930 0.99595 1.69636 1.17549 1.34068 1.36522 0.86315 0.77155 0.85523 0.77486 1.21198 1.21670 1.21167 1.23317 0.97815 0.99777 0.98206 1.22632 0.99718 0.98061 0.96181 1.23146 1.00498 0.96561 0.98060 0.92788 0.91998 0.91565 0.88706 0.90211 0.81585 0.81263 0.88262 0.92381 0.92141 0.88059 0.88374 0.76425 0.92665 0.91181 0.77922 0.93372 0.91321 0.90699 0.90014 0.92707 0.91681 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.90 37.16 0.37 -0.95 16 2 C -0.04 -0.45 6.08 -27.88 -0.17 -0.62 16 3 C 0.21 2.69 7.16 -155.42 -1.11 1.58 16 4 N -0.49 -7.02 11.25 -10.81 -0.12 -7.14 16 5 C -0.03 -0.39 11.87 -17.81 -0.21 -0.60 16 6 C -0.06 -0.61 10.70 -16.56 -0.18 -0.78 16 7 N -0.45 -5.16 2.61 -106.83 -0.28 -5.44 16 8 C 0.15 1.63 2.64 -67.93 -0.18 1.45 16 9 H 0.11 1.32 6.48 -51.93 -0.34 0.99 16 10 C -0.16 -1.67 8.99 37.16 0.33 -1.34 16 11 C -0.15 -1.71 5.18 -27.88 -0.14 -1.86 16 12 C 0.52 7.47 7.55 -10.99 -0.08 7.39 16 13 O -0.55 -9.39 13.97 5.56 0.08 -9.32 16 14 N -0.70 -10.55 5.42 -60.29 -0.33 -10.88 16 15 C 0.12 2.02 5.08 -4.04 -0.02 2.00 16 16 C 0.17 2.99 0.80 -131.01 -0.11 2.89 16 17 N -0.70 -15.38 5.19 -46.48 -0.24 -15.62 16 18 C -0.24 -6.09 9.05 -15.06 -0.14 -6.22 16 19 H 0.07 1.78 7.83 -52.49 -0.41 1.36 16 20 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 21 N -0.93 -26.34 13.07 55.49 0.73 -25.61 16 22 Si 0.90 21.65 29.55 -169.99 -5.02 16.62 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 C -0.15 -2.44 7.28 -25.91 -0.19 -2.63 16 27 C -0.13 -1.89 7.99 -25.92 -0.21 -2.09 16 28 C -0.14 -2.05 7.04 -25.92 -0.18 -2.24 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.80 7.07 -51.93 -0.37 0.43 16 34 H 0.17 1.57 8.06 -52.48 -0.42 1.15 16 35 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.10 1.18 5.95 -51.92 -0.31 0.87 16 37 H 0.06 0.52 7.95 -51.93 -0.41 0.11 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.10 0.90 8.09 -51.92 -0.42 0.48 16 41 H 0.40 5.71 8.30 -40.82 -0.34 5.37 16 42 H 0.06 0.87 8.01 -51.93 -0.42 0.45 16 43 H 0.07 1.41 7.80 -51.93 -0.41 1.01 16 44 H 0.39 9.11 7.87 -40.82 -0.32 8.79 16 45 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.07 0.97 8.01 -51.93 -0.42 0.56 16 47 H 0.07 1.38 7.87 -51.92 -0.41 0.97 16 48 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 49 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 51 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 LS Contribution 412.17 15.07 6.21 6.21 Total: -1.00 -30.54 412.17 -10.06 -40.60 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -8.77 Total: 14.86 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -2.31 Total: -4.29 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: -0.24 Total: -64.68 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.32 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -30.54 -10.06 -40.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733715258.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.525 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds