Wall clock time and date at job start Tue Mar 31 2020 18:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50709 * 109.47466 * 2 1 4 4 N 1.30489 * 125.64910 * 270.00468 * 3 2 1 5 5 C 1.34128 * 109.25903 * 179.97438 * 4 3 2 6 6 C 1.34670 * 108.01714 * 0.02562 * 5 4 3 7 7 N 1.35043 * 125.64516 * 89.99518 * 3 2 1 8 8 C 1.46500 * 126.40260 * 0.26811 * 7 3 2 9 9 H 1.09000 * 109.46976 * 359.71278 * 8 7 3 10 10 C 1.52997 * 109.46964 * 239.71271 * 8 7 3 11 11 C 1.52996 * 109.47107 * 119.70835 * 8 7 3 12 12 C 1.50701 * 109.47229 * 185.00037 * 11 8 7 13 13 O 1.21277 * 119.99602 * 0.02562 * 12 11 8 14 14 N 1.34774 * 119.99946 * 180.02562 * 12 11 8 15 15 C 1.46503 * 119.99947 * 179.97438 * 14 12 11 16 16 C 1.52993 * 109.47148 * 180.19457 * 15 14 12 17 17 N 1.46500 * 112.85382 * 292.10396 * 16 15 14 18 18 C 1.36941 * 119.99704 * 294.86686 * 17 16 15 19 19 H 1.08002 * 119.99922 * 353.76623 * 18 17 16 20 20 C 1.38814 * 119.99638 * 173.76920 * 18 17 16 21 21 N 1.31613 * 120.00194 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99699 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47344 * 59.99733 * 22 20 18 24 24 H 1.48506 * 109.47184 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47323 * 299.99582 * 22 20 18 26 26 C 1.53785 * 113.61361 * 160.79405 * 16 15 14 27 27 C 1.53784 * 87.08309 * 220.01996 * 26 16 15 28 28 C 1.53782 * 113.61320 * 63.30156 * 16 15 14 29 29 H 1.08997 * 109.46652 * 300.00020 * 1 2 3 30 30 H 1.08996 * 109.46784 * 59.99624 * 1 2 3 31 31 H 1.08993 * 109.46837 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47372 * 240.00008 * 2 1 3 33 33 H 1.09003 * 109.47305 * 119.99982 * 2 1 3 34 34 H 1.08003 * 125.99437 * 179.97438 * 5 4 3 35 35 H 1.08001 * 126.59626 * 180.02562 * 6 5 4 36 36 H 1.09008 * 109.46782 * 180.02562 * 10 8 7 37 37 H 1.09002 * 109.46806 * 299.99599 * 10 8 7 38 38 H 1.08995 * 109.47697 * 60.00179 * 10 8 7 39 39 H 1.08995 * 109.47633 * 305.00663 * 11 8 7 40 40 H 1.09010 * 109.47218 * 65.00074 * 11 8 7 41 41 H 0.96995 * 120.00245 * 359.97438 * 14 12 11 42 42 H 1.08998 * 109.47144 * 300.19876 * 15 14 12 43 43 H 1.09004 * 109.47077 * 60.19377 * 15 14 12 44 44 H 0.96999 * 120.00265 * 114.86846 * 17 16 15 45 45 H 0.97003 * 119.99731 * 180.02562 * 21 20 18 46 46 H 1.09001 * 113.61551 * 334.57660 * 26 16 15 47 47 H 1.09009 * 113.61143 * 105.47129 * 26 16 15 48 48 H 1.09001 * 113.61174 * 270.88485 * 27 26 16 49 49 H 1.08994 * 113.61044 * 139.98111 * 27 26 16 50 50 H 1.09004 * 113.61271 * 254.52289 * 28 16 15 51 51 H 1.08993 * 113.61563 * 25.43119 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2859 2.1379 -1.0604 5 6 2.7144 3.3512 -0.6819 6 6 2.7275 3.3872 0.6643 7 7 2.2947 2.1629 1.0974 8 6 2.1493 1.7354 2.4911 9 1 1.7851 0.7084 2.5200 10 6 1.1516 2.6505 3.2037 11 6 3.5063 1.8152 3.1933 12 6 3.3830 1.2604 4.5890 13 8 2.3151 0.8419 4.9830 14 7 4.4596 1.2292 5.3993 15 6 4.3397 0.6904 6.7563 16 6 5.6954 0.7752 7.4603 17 7 6.6954 -0.1241 6.8793 18 6 6.5225 -1.4804 6.9547 19 1 5.7037 -1.8894 7.5281 20 6 7.3996 -2.3296 6.2941 21 7 8.3971 -1.8312 5.5950 22 14 7.1634 -4.1798 6.3964 23 1 5.8321 -4.5400 5.8457 24 1 8.2242 -4.8586 5.6094 25 1 7.2457 -4.6118 7.8147 26 6 5.6004 0.6862 8.9926 27 6 6.6863 1.7739 9.0446 28 6 6.2000 2.2149 7.6539 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.9998 4.1577 -1.3411 35 1 3.0219 4.2218 1.2833 36 1 1.0437 2.3327 4.2408 37 1 1.5158 3.6775 3.1748 38 1 0.1848 2.5936 2.7035 39 1 4.2394 1.2335 2.6345 40 1 3.8291 2.8552 3.2429 41 1 5.3137 1.5636 5.0840 42 1 3.6039 1.2701 7.3137 43 1 4.0203 -0.3506 6.7070 44 1 7.4800 0.2412 6.4413 45 1 9.0099 -2.4247 5.1331 46 1 4.6385 1.0101 9.3900 47 1 5.9242 -0.2737 9.3952 48 1 7.7016 1.3774 9.0467 49 1 6.5203 2.5197 9.8219 50 1 7.0081 2.4892 6.9756 51 1 5.4021 2.9567 7.6853 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733715258.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:12 Heat of formation + Delta-G solvation = 26.030388 kcal Electronic energy + Delta-G solvation = -29460.900984 eV Core-core repulsion = 25589.127769 eV Total energy + Delta-G solvation = -3871.773215 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.15614 -41.05406 -39.97049 -36.72004 -35.30917 -35.19536 -34.72530 -32.06743 -31.79622 -29.81386 -29.53612 -27.88275 -26.71845 -25.69104 -24.84534 -24.12616 -23.06205 -22.08061 -21.20973 -20.23533 -19.70171 -19.11072 -18.50703 -17.63789 -17.02107 -16.84938 -16.51580 -16.23089 -15.91462 -15.83269 -15.59475 -15.22361 -15.06068 -14.91826 -14.73606 -14.40253 -14.22130 -14.11186 -13.92258 -13.73557 -13.21889 -13.09692 -12.99594 -12.90640 -12.77846 -12.58053 -12.54946 -12.50595 -12.23095 -12.21289 -11.99030 -11.93912 -11.59300 -11.48473 -11.11736 -10.94498 -10.84526 -10.71748 -10.55889 -9.93490 -9.27814 -8.98908 -7.94988 -5.21511 1.10785 1.44888 1.45995 1.51091 1.62839 1.66953 2.19557 2.40714 2.54164 3.37407 3.39390 3.47999 3.67063 3.75217 3.75770 3.83072 3.91365 3.99828 4.06453 4.12431 4.22285 4.25321 4.32916 4.38839 4.48424 4.49469 4.65571 4.66935 4.69986 4.79030 4.85052 4.86862 4.90707 4.92361 4.96440 5.02837 5.05547 5.13268 5.17549 5.25057 5.31729 5.42614 5.43808 5.52600 5.63511 5.71662 5.88365 6.24630 6.29354 6.60897 7.17602 7.26083 7.35830 8.10440 8.33277 9.27106 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011121 B = 0.003046 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.115382 B = 9189.013394 C =10455.128460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 C 0.194 3.806 4 N -0.528 5.528 5 C -0.054 4.054 6 C -0.049 4.049 7 N -0.446 5.446 8 C 0.151 3.849 9 H 0.098 0.902 10 C -0.154 4.154 11 C -0.141 4.141 12 C 0.515 3.485 13 O -0.578 6.578 14 N -0.700 5.700 15 C 0.130 3.870 16 C 0.158 3.842 17 N -0.706 5.706 18 C -0.223 4.223 19 H 0.066 0.934 20 C -0.064 4.064 21 N -0.961 5.961 22 Si 0.954 3.046 23 H -0.286 1.286 24 H -0.297 1.297 25 H -0.281 1.281 26 C -0.151 4.151 27 C -0.123 4.123 28 C -0.125 4.125 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.185 0.815 35 H 0.203 0.797 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.128 0.872 41 H 0.407 0.593 42 H 0.074 0.926 43 H 0.030 0.970 44 H 0.377 0.623 45 H 0.249 0.751 46 H 0.095 0.905 47 H 0.045 0.955 48 H 0.058 0.942 49 H 0.085 0.915 50 H 0.066 0.934 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.155 13.832 -4.029 18.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.083 4.083 3 C -0.069 4.069 4 N -0.247 5.247 5 C -0.201 4.201 6 C -0.181 4.181 7 N -0.129 5.129 8 C 0.048 3.952 9 H 0.116 0.884 10 C -0.212 4.212 11 C -0.182 4.182 12 C 0.302 3.698 13 O -0.459 6.459 14 N -0.349 5.349 15 C 0.004 3.996 16 C 0.067 3.933 17 N -0.345 5.345 18 C -0.355 4.355 19 H 0.084 0.916 20 C -0.257 4.257 21 N -0.612 5.612 22 Si 0.785 3.215 23 H -0.213 1.213 24 H -0.223 1.223 25 H -0.207 1.207 26 C -0.191 4.191 27 C -0.160 4.160 28 C -0.163 4.163 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.202 0.798 35 H 0.219 0.781 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.146 0.854 41 H 0.242 0.758 42 H 0.092 0.908 43 H 0.049 0.951 44 H 0.210 0.790 45 H 0.058 0.942 46 H 0.113 0.887 47 H 0.063 0.937 48 H 0.077 0.923 49 H 0.103 0.897 50 H 0.085 0.915 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.055 13.059 -4.373 18.976 hybrid contribution 1.121 -0.998 0.389 1.551 sum -11.934 12.061 -3.984 17.429 Atomic orbital electron populations 1.21675 0.92972 1.03177 1.01827 1.20076 0.97295 0.86728 1.04247 1.23595 1.04339 0.97335 0.81586 1.70194 1.19580 1.05532 1.29397 1.22683 1.07287 0.96239 0.93940 1.23104 1.07990 0.90342 0.96702 1.45671 1.48378 1.11875 1.06962 1.21098 0.95690 1.01203 0.77197 0.88403 1.22164 0.97919 0.99304 1.01809 1.21920 0.98454 1.05433 0.92367 1.20567 0.83658 0.78335 0.87276 1.90649 1.28584 1.49608 1.77029 1.45753 1.12350 1.62192 1.14617 1.21661 0.98398 0.97229 0.82335 1.21112 0.88097 0.91735 0.92360 1.42112 1.23319 1.01518 1.67585 1.19255 1.09143 0.83930 1.23194 0.91614 1.25290 0.98664 1.00990 1.00722 1.69752 1.18615 1.34541 1.38263 0.85504 0.76535 0.82142 0.77347 1.21289 1.22343 1.20702 1.23347 0.99732 0.99123 0.96870 1.22566 0.97892 0.97989 0.97578 1.23097 1.01144 0.94701 0.97375 0.93120 0.92626 0.90008 0.88676 0.90098 0.79814 0.78062 0.89765 0.90569 0.92108 0.88500 0.85365 0.75788 0.90828 0.95133 0.78998 0.94229 0.88669 0.93656 0.92275 0.89678 0.91545 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.90 71.98 0.71 -1.74 16 2 C -0.04 -0.92 6.08 29.85 0.18 -0.74 16 3 C 0.19 4.83 7.16 138.13 0.99 5.82 16 4 N -0.53 -14.72 11.25 -188.13 -2.12 -16.83 16 5 C -0.05 -1.23 11.87 83.52 0.99 -0.24 16 6 C -0.05 -0.92 10.70 83.09 0.89 -0.03 16 7 N -0.45 -9.57 2.61 -491.91 -1.28 -10.86 16 8 C 0.15 3.10 2.64 44.99 0.12 3.22 16 9 H 0.10 2.28 6.48 -2.39 -0.02 2.26 16 10 C -0.15 -2.84 8.99 71.98 0.65 -2.19 16 11 C -0.14 -2.86 5.18 29.85 0.15 -2.71 16 12 C 0.52 14.14 7.55 87.66 0.66 14.80 16 13 O -0.58 -19.17 13.97 -3.02 -0.04 -19.21 16 14 N -0.70 -20.01 5.42 -463.07 -2.51 -22.52 16 15 C 0.13 4.23 5.08 86.38 0.44 4.67 16 16 C 0.16 5.24 0.80 4.13 0.00 5.24 16 17 N -0.71 -31.03 5.19 -300.96 -1.56 -32.59 16 18 C -0.22 -11.47 9.05 84.03 0.76 -10.71 16 19 H 0.07 3.38 7.83 -2.91 -0.02 3.36 16 20 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 21 N -0.96 -55.42 13.07 21.65 0.28 -55.13 16 22 Si 0.95 45.20 29.55 68.60 2.03 47.23 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 24 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 25 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 26 C -0.15 -4.61 7.28 31.12 0.23 -4.38 16 27 C -0.12 -3.29 7.99 31.12 0.25 -3.04 16 28 C -0.13 -3.17 7.04 31.12 0.22 -2.95 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.08 1.62 7.07 -2.39 -0.02 1.60 16 34 H 0.18 3.20 8.06 -2.91 -0.02 3.17 16 35 H 0.20 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.08 1.87 5.95 -2.38 -0.01 1.85 16 37 H 0.08 1.11 7.95 -2.39 -0.02 1.10 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.13 1.84 8.09 -2.38 -0.02 1.82 16 41 H 0.41 10.82 8.30 -92.71 -0.77 10.05 16 42 H 0.07 2.13 8.01 -2.39 -0.02 2.11 16 43 H 0.03 1.23 7.80 -2.38 -0.02 1.21 16 44 H 0.38 17.88 7.87 -92.71 -0.73 17.15 16 45 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 46 H 0.09 2.41 8.01 -2.39 -0.02 2.39 16 47 H 0.04 1.65 7.87 -2.38 -0.02 1.63 16 48 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 50 H 0.07 1.70 8.09 -2.38 -0.02 1.68 16 51 H 0.11 2.13 8.10 -2.39 -0.02 2.11 16 Total: -1.00 -67.28 412.17 1.93 -65.35 By element: Atomic # 1 Polarization: 43.13 SS G_CDS: -0.57 Total: 42.56 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 7.71 Total: 2.00 kcal Atomic # 7 Polarization: -130.74 SS G_CDS: -7.19 Total: -137.93 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.04 Total: -19.21 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -67.28 1.93 -65.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733715258.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.380 kcal (2) G-P(sol) polarization free energy of solvation -67.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds