Wall clock time and date at job start Tue Mar 31 2020 19:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47169 * 2 1 4 4 C 1.50699 * 109.47749 * 120.00498 * 2 1 3 5 5 N 1.32160 * 120.53444 * 293.91828 * 4 2 1 6 6 C 1.31857 * 120.96677 * 180.02562 * 5 4 2 7 7 N 1.31884 * 122.09698 * 359.97438 * 6 5 4 8 8 C 1.32139 * 120.96312 * 0.02562 * 7 6 5 9 9 C 1.39930 * 120.53979 * 113.92853 * 4 2 1 10 10 C 1.47832 * 120.94008 * 359.96367 * 9 4 2 11 11 O 1.21552 * 119.99831 * 310.88177 * 10 9 4 12 12 N 1.34776 * 120.00188 * 130.88132 * 10 9 4 13 13 C 1.46495 * 119.99693 * 4.68020 * 12 10 9 14 14 C 1.46500 * 119.99726 * 184.68133 * 12 10 9 15 15 C 1.52995 * 109.47368 * 90.00387 * 14 12 10 16 16 C 1.53007 * 109.46676 * 299.99324 * 15 14 12 17 17 C 1.52999 * 109.47434 * 59.99354 * 15 14 12 18 18 C 1.53002 * 109.47065 * 179.97438 * 15 14 12 19 19 N 1.46505 * 109.46923 * 179.97438 * 18 15 14 20 20 C 1.36934 * 119.99721 * 179.97438 * 19 18 15 21 21 H 1.08002 * 120.00144 * 0.02562 * 20 19 18 22 22 C 1.38811 * 119.99830 * 179.97438 * 20 19 18 23 23 N 1.31622 * 119.99893 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99894 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46986 * 60.00598 * 24 22 20 26 26 H 1.48500 * 109.46860 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47404 * 300.00222 * 24 22 20 28 28 H 1.09000 * 109.46758 * 299.99544 * 1 2 3 29 29 H 1.08995 * 109.47230 * 59.99563 * 1 2 3 30 30 H 1.09000 * 109.46832 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47133 * 240.00250 * 2 1 3 32 32 H 1.09000 * 109.47316 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47401 * 300.00331 * 3 2 1 34 34 H 1.09000 * 109.46908 * 60.00548 * 3 2 1 35 35 H 1.08001 * 118.95131 * 180.27751 * 6 5 4 36 36 H 1.08001 * 120.53164 * 180.02562 * 8 7 6 37 37 H 1.08993 * 109.47311 * 84.60980 * 13 12 10 38 38 H 1.09002 * 109.47044 * 204.60543 * 13 12 10 39 39 H 1.08999 * 109.47440 * 324.60230 * 13 12 10 40 40 H 1.09004 * 109.46841 * 210.00142 * 14 12 10 41 41 H 1.08995 * 109.47321 * 329.99595 * 14 12 10 42 42 H 1.08996 * 109.46986 * 60.00387 * 16 15 14 43 43 H 1.09001 * 109.46545 * 179.97438 * 16 15 14 44 44 H 1.08995 * 109.47151 * 300.00265 * 16 15 14 45 45 H 1.09004 * 109.46780 * 60.00242 * 17 15 14 46 46 H 1.09004 * 109.46800 * 180.02562 * 17 15 14 47 47 H 1.08996 * 109.47325 * 300.00284 * 17 15 14 48 48 H 1.08992 * 109.47318 * 299.99430 * 18 15 14 49 49 H 1.09000 * 109.46929 * 59.99784 * 18 15 14 50 50 H 0.96997 * 120.00098 * 359.97438 * 19 18 15 51 51 H 0.96998 * 119.99563 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0325 -0.7105 1.2303 5 7 1.8213 -0.2029 2.4322 6 6 2.2575 -0.8171 3.5143 7 7 2.9190 -1.9564 3.4548 8 6 3.1744 -2.5345 2.2944 9 6 2.7304 -1.9182 1.1188 10 6 2.9910 -2.5261 -0.2033 11 8 2.0845 -2.6535 -1.0030 12 7 4.2338 -2.9391 -0.5219 13 6 5.3037 -2.8805 0.4770 14 6 4.5145 -3.4467 -1.8672 15 6 4.9446 -2.2887 -2.7698 16 6 3.8210 -1.2524 -2.8399 17 6 6.2048 -1.6367 -2.1974 18 6 5.2383 -2.8190 -4.1746 19 7 5.6496 -1.7099 -5.0391 20 6 5.9661 -1.9451 -6.3504 21 1 5.9122 -2.9480 -6.7475 22 6 6.3553 -0.8942 -7.1696 23 7 6.4205 0.3281 -6.6858 24 14 6.7864 -1.2149 -8.9587 25 1 5.6102 -1.7958 -9.6548 26 1 7.1679 0.0627 -9.6125 27 1 7.9241 -2.1664 -9.0309 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 2.0628 -0.3754 4.4805 36 1 3.7163 -3.4678 2.2538 37 1 5.2713 -3.7762 1.0972 38 1 6.2685 -2.8222 -0.0269 39 1 5.1676 -1.9993 1.1040 40 1 5.3148 -4.1850 -1.8172 41 1 3.6167 -3.9112 -2.2749 42 1 3.6122 -0.8747 -1.8391 43 1 4.1277 -0.4272 -3.4827 44 1 2.9233 -1.7169 -3.2477 45 1 7.0051 -2.3750 -2.1474 46 1 6.5109 -0.8114 -2.8403 47 1 5.9959 -1.2590 -1.1965 48 1 6.0388 -3.5570 -4.1243 49 1 4.3407 -3.2837 -4.5826 50 1 5.6977 -0.8092 -4.6825 51 1 6.6928 1.0623 -7.2582 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734025021.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:24 Heat of formation + Delta-G solvation = 20.363032 kcal Electronic energy + Delta-G solvation = -30571.248462 eV Core-core repulsion = 26699.229492 eV Total energy + Delta-G solvation = -3872.018970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.78165 -39.97319 -37.45075 -36.35777 -35.20149 -33.54684 -33.01168 -31.82738 -30.17583 -28.04558 -27.26308 -27.02610 -26.29714 -25.60586 -25.16823 -24.46976 -22.51563 -21.07338 -20.10595 -18.50703 -18.25758 -17.46376 -17.22638 -16.99785 -16.22875 -15.76249 -15.07121 -14.98198 -14.66144 -14.30335 -14.25514 -13.89964 -13.85756 -13.71585 -13.33809 -13.26821 -13.15896 -12.80839 -12.61460 -12.33839 -12.27923 -12.12743 -11.94188 -11.71159 -11.46609 -11.34135 -11.20215 -11.09215 -10.94892 -10.82762 -10.79803 -10.70957 -10.33801 -10.25637 -10.08187 -9.88487 -9.72360 -9.66524 -9.58476 -8.84487 -8.69227 -6.88084 -5.74343 -3.01919 0.24363 0.67385 2.41989 2.79590 3.38018 3.45356 3.49785 3.50682 3.65238 3.73467 3.95972 4.14802 4.55579 4.61635 4.80164 4.87380 4.87915 5.00162 5.01866 5.11188 5.14067 5.23921 5.34611 5.42299 5.45653 5.56627 5.58335 5.67630 5.72768 5.75390 5.82967 5.87944 5.90974 5.97376 6.06379 6.08762 6.12254 6.20861 6.25496 6.34391 6.45794 6.54567 6.56253 6.71193 6.74172 6.90983 6.93540 7.15702 7.66905 7.71771 7.93587 8.45175 9.56303 10.15016 10.49714 11.48662 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018047 B = 0.002955 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.119190 B = 9474.232626 C =10230.816956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.062 4.062 3 C -0.141 4.141 4 C 0.237 3.763 5 N -0.514 5.514 6 C 0.309 3.691 7 N -0.526 5.526 8 C 0.179 3.821 9 C -0.233 4.233 10 C 0.568 3.432 11 O -0.513 6.513 12 N -0.600 5.600 13 C 0.068 3.932 14 C 0.126 3.874 15 C -0.086 4.086 16 C -0.127 4.127 17 C -0.137 4.137 18 C 0.166 3.834 19 N -0.727 5.727 20 C -0.237 4.237 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.935 5.935 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.287 1.287 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.200 0.800 36 H 0.173 0.827 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.036 0.964 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.050 0.950 46 H 0.068 0.932 47 H 0.043 0.957 48 H 0.018 0.982 49 H 0.020 0.980 50 H 0.385 0.615 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.731 -3.848 22.360 23.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.081 4.081 3 C -0.198 4.198 4 C 0.090 3.910 5 N -0.227 5.227 6 C 0.022 3.978 7 N -0.240 5.240 8 C 0.012 3.988 9 C -0.240 4.240 10 C 0.354 3.646 11 O -0.389 6.389 12 N -0.332 5.332 13 C -0.075 4.075 14 C 0.004 3.996 15 C -0.087 4.087 16 C -0.184 4.184 17 C -0.194 4.194 18 C 0.038 3.962 19 N -0.373 5.373 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.583 5.583 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.214 1.214 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.126 0.874 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.216 0.784 36 H 0.190 0.810 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.055 0.945 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.062 0.938 48 H 0.036 0.964 49 H 0.038 0.962 50 H 0.220 0.780 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.353 -3.582 22.673 24.103 hybrid contribution 0.661 -0.261 -1.497 1.657 sum -6.691 -3.843 21.176 22.538 Atomic orbital electron populations 1.21695 0.92608 1.02330 1.02492 1.20501 0.97607 0.96734 0.93285 1.21788 1.00945 0.94182 1.02903 1.21880 0.86429 0.88725 0.93971 1.68300 1.21216 1.34668 0.98556 1.25190 0.87722 0.87270 0.97658 1.68460 1.15528 1.11645 1.28348 1.23554 0.90935 0.97885 0.86426 1.21682 1.05758 0.99954 0.96636 1.17744 0.82957 0.78280 0.85597 1.90829 1.43277 1.54511 1.50238 1.47676 1.08573 1.63410 1.13519 1.22104 0.91865 1.01266 0.92237 1.21660 1.02054 0.95822 0.80077 1.21114 0.96104 0.95595 0.95921 1.21783 0.97677 0.98935 1.00032 1.21887 0.96417 1.01299 0.99781 1.20570 0.96575 0.91480 0.87596 1.42368 1.81208 1.05633 1.08041 1.19187 1.37312 0.93697 0.86659 0.91330 1.24712 1.02681 0.95402 0.98203 1.69646 1.54534 0.98731 1.35430 0.86276 0.78190 0.76612 0.85159 1.21317 1.21751 1.21365 0.92067 0.91433 0.92438 0.87424 0.92853 0.91393 0.91532 0.78355 0.80991 0.92317 0.89441 0.91715 0.90172 0.89319 0.94484 0.91831 0.92383 0.93121 0.91349 0.93778 0.96449 0.96228 0.78017 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 9.16 37.16 0.34 -1.11 16 2 C -0.06 -0.74 2.85 -91.77 -0.26 -1.00 16 3 C -0.14 -1.52 9.05 37.16 0.34 -1.19 16 4 C 0.24 2.78 5.52 -81.82 -0.45 2.32 16 5 N -0.51 -5.55 9.98 -10.48 -0.10 -5.66 16 6 C 0.31 2.79 12.27 -92.02 -1.13 1.66 16 7 N -0.53 -5.05 10.42 -14.24 -0.15 -5.20 16 8 C 0.18 1.66 9.11 -16.77 -0.15 1.51 16 9 C -0.23 -2.62 4.90 -104.69 -0.51 -3.14 16 10 C 0.57 7.22 4.86 -12.34 -0.06 7.16 16 11 O -0.51 -8.04 13.45 5.32 0.07 -7.97 16 12 N -0.60 -6.64 2.40 -182.71 -0.44 -7.08 16 13 C 0.07 0.54 7.82 59.84 0.47 1.01 16 14 C 0.13 1.60 4.59 -4.04 -0.02 1.58 16 15 C -0.09 -1.35 0.60 -154.51 -0.09 -1.44 16 16 C -0.13 -2.16 7.04 37.16 0.26 -1.90 16 17 C -0.14 -2.04 7.07 37.16 0.26 -1.78 16 18 C 0.17 3.27 5.15 -4.04 -0.02 3.25 16 19 N -0.73 -18.09 5.01 -59.91 -0.30 -18.39 16 20 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 24 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.11 1.49 4.22 -51.93 -0.22 1.27 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.68 7.97 -51.93 -0.41 0.27 16 35 H 0.20 1.09 8.06 -52.49 -0.42 0.66 16 36 H 0.17 1.16 6.41 -52.49 -0.34 0.82 16 37 H 0.06 0.33 7.11 -51.93 -0.37 -0.04 16 38 H 0.09 0.67 6.29 -51.93 -0.33 0.35 16 39 H 0.06 0.51 6.30 -51.93 -0.33 0.18 16 40 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 41 H 0.09 1.23 7.36 -51.93 -0.38 0.85 16 42 H 0.04 0.57 4.82 -51.93 -0.25 0.32 16 43 H 0.06 1.24 6.86 -51.93 -0.36 0.88 16 44 H 0.06 1.05 7.84 -51.93 -0.41 0.64 16 45 H 0.05 0.70 8.07 -51.93 -0.42 0.29 16 46 H 0.07 1.24 6.86 -51.93 -0.36 0.89 16 47 H 0.04 0.57 6.07 -51.93 -0.32 0.25 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.38 10.03 5.36 -40.82 -0.22 9.81 16 51 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 391.48 15.07 5.90 5.90 Total: -1.00 -32.61 391.48 -8.64 -41.26 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -8.04 Total: 7.43 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -1.28 Total: -0.34 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: -0.27 Total: -63.73 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.07 Total: -7.97 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.61 -8.64 -41.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734025021.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.620 kcal (2) G-P(sol) polarization free energy of solvation -32.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds