Wall clock time and date at job start Tue Mar 31 2020 19:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47169 * 2 1 4 4 C 1.50699 * 109.47749 * 120.00498 * 2 1 3 5 5 N 1.32160 * 120.53444 * 293.91828 * 4 2 1 6 6 C 1.31857 * 120.96677 * 180.02562 * 5 4 2 7 7 N 1.31884 * 122.09698 * 359.97438 * 6 5 4 8 8 C 1.32139 * 120.96312 * 0.02562 * 7 6 5 9 9 C 1.39930 * 120.53979 * 113.92853 * 4 2 1 10 10 C 1.47832 * 120.94008 * 359.96367 * 9 4 2 11 11 O 1.21552 * 119.99831 * 310.88177 * 10 9 4 12 12 N 1.34776 * 120.00188 * 130.88132 * 10 9 4 13 13 C 1.46495 * 119.99693 * 4.68020 * 12 10 9 14 14 C 1.46500 * 119.99726 * 184.68133 * 12 10 9 15 15 C 1.52995 * 109.47368 * 90.00387 * 14 12 10 16 16 C 1.53007 * 109.46676 * 299.99324 * 15 14 12 17 17 C 1.52999 * 109.47434 * 59.99354 * 15 14 12 18 18 C 1.53002 * 109.47065 * 179.97438 * 15 14 12 19 19 N 1.46505 * 109.46923 * 179.97438 * 18 15 14 20 20 C 1.36934 * 119.99721 * 179.97438 * 19 18 15 21 21 H 1.08002 * 120.00144 * 0.02562 * 20 19 18 22 22 C 1.38811 * 119.99830 * 179.97438 * 20 19 18 23 23 N 1.31622 * 119.99893 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99894 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46986 * 60.00598 * 24 22 20 26 26 H 1.48500 * 109.46860 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47404 * 300.00222 * 24 22 20 28 28 H 1.09000 * 109.46758 * 299.99544 * 1 2 3 29 29 H 1.08995 * 109.47230 * 59.99563 * 1 2 3 30 30 H 1.09000 * 109.46832 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47133 * 240.00250 * 2 1 3 32 32 H 1.09000 * 109.47316 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47401 * 300.00331 * 3 2 1 34 34 H 1.09000 * 109.46908 * 60.00548 * 3 2 1 35 35 H 1.08001 * 118.95131 * 180.27751 * 6 5 4 36 36 H 1.08001 * 120.53164 * 180.02562 * 8 7 6 37 37 H 1.08993 * 109.47311 * 84.60980 * 13 12 10 38 38 H 1.09002 * 109.47044 * 204.60543 * 13 12 10 39 39 H 1.08999 * 109.47440 * 324.60230 * 13 12 10 40 40 H 1.09004 * 109.46841 * 210.00142 * 14 12 10 41 41 H 1.08995 * 109.47321 * 329.99595 * 14 12 10 42 42 H 1.08996 * 109.46986 * 60.00387 * 16 15 14 43 43 H 1.09001 * 109.46545 * 179.97438 * 16 15 14 44 44 H 1.08995 * 109.47151 * 300.00265 * 16 15 14 45 45 H 1.09004 * 109.46780 * 60.00242 * 17 15 14 46 46 H 1.09004 * 109.46800 * 180.02562 * 17 15 14 47 47 H 1.08996 * 109.47325 * 300.00284 * 17 15 14 48 48 H 1.08992 * 109.47318 * 299.99430 * 18 15 14 49 49 H 1.09000 * 109.46929 * 59.99784 * 18 15 14 50 50 H 0.96997 * 120.00098 * 359.97438 * 19 18 15 51 51 H 0.96998 * 119.99563 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0325 -0.7105 1.2303 5 7 1.8213 -0.2029 2.4322 6 6 2.2575 -0.8171 3.5143 7 7 2.9190 -1.9564 3.4548 8 6 3.1744 -2.5345 2.2944 9 6 2.7304 -1.9182 1.1188 10 6 2.9910 -2.5261 -0.2033 11 8 2.0845 -2.6535 -1.0030 12 7 4.2338 -2.9391 -0.5219 13 6 5.3037 -2.8805 0.4770 14 6 4.5145 -3.4467 -1.8672 15 6 4.9446 -2.2887 -2.7698 16 6 3.8210 -1.2524 -2.8399 17 6 6.2048 -1.6367 -2.1974 18 6 5.2383 -2.8190 -4.1746 19 7 5.6496 -1.7099 -5.0391 20 6 5.9661 -1.9451 -6.3504 21 1 5.9122 -2.9480 -6.7475 22 6 6.3553 -0.8942 -7.1696 23 7 6.4205 0.3281 -6.6858 24 14 6.7864 -1.2149 -8.9587 25 1 5.6102 -1.7958 -9.6548 26 1 7.1679 0.0627 -9.6125 27 1 7.9241 -2.1664 -9.0309 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 2.0628 -0.3754 4.4805 36 1 3.7163 -3.4678 2.2538 37 1 5.2713 -3.7762 1.0972 38 1 6.2685 -2.8222 -0.0269 39 1 5.1676 -1.9993 1.1040 40 1 5.3148 -4.1850 -1.8172 41 1 3.6167 -3.9112 -2.2749 42 1 3.6122 -0.8747 -1.8391 43 1 4.1277 -0.4272 -3.4827 44 1 2.9233 -1.7169 -3.2477 45 1 7.0051 -2.3750 -2.1474 46 1 6.5109 -0.8114 -2.8403 47 1 5.9959 -1.2590 -1.1965 48 1 6.0388 -3.5570 -4.1243 49 1 4.3407 -3.2837 -4.5826 50 1 5.6977 -0.8092 -4.6825 51 1 6.6928 1.0623 -7.2582 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734025021.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:23 Heat of formation + Delta-G solvation = 0.905563 kcal Electronic energy + Delta-G solvation = -30572.092201 eV Core-core repulsion = 26699.229492 eV Total energy + Delta-G solvation = -3872.862709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.59124 -40.94482 -38.73144 -37.26761 -36.38953 -35.03688 -34.06337 -32.81753 -32.00383 -28.97595 -28.30039 -28.11710 -27.34609 -27.25334 -25.95910 -25.57255 -24.23320 -21.92582 -21.11082 -19.88521 -19.13334 -19.07856 -18.31422 -17.76822 -17.23796 -16.88426 -16.55318 -15.96172 -15.80218 -15.57332 -15.36281 -15.22173 -15.08127 -14.67197 -14.59817 -14.28489 -14.14969 -14.12082 -13.85862 -13.74735 -13.22170 -13.12191 -12.94710 -12.77931 -12.75316 -12.57730 -12.56887 -12.47741 -12.35365 -12.27140 -12.17162 -11.95817 -11.67120 -11.64653 -11.57756 -11.42617 -10.94448 -10.90680 -10.60205 -10.35671 -9.65560 -8.95193 -7.92952 -5.20302 -0.52394 -0.09720 1.46664 1.48650 1.50072 1.56019 1.91416 2.57588 2.62053 2.87594 3.08261 3.20591 3.34035 3.40420 3.73753 3.84107 3.89427 3.93202 4.02589 4.10175 4.14422 4.22010 4.30478 4.39012 4.46658 4.50641 4.59341 4.62834 4.71717 4.78455 4.81341 4.83748 4.85111 4.87137 4.92144 4.94185 5.04020 5.14191 5.15433 5.17458 5.18864 5.22973 5.33344 5.44927 5.48867 5.50079 5.54308 5.78009 6.26315 6.29451 6.92798 7.00494 7.36203 8.13914 8.37093 9.30550 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018047 B = 0.002955 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.119190 B = 9474.232626 C =10230.816956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.064 4.064 3 C -0.135 4.135 4 C 0.225 3.775 5 N -0.526 5.526 6 C 0.311 3.689 7 N -0.531 5.531 8 C 0.191 3.809 9 C -0.247 4.247 10 C 0.567 3.433 11 O -0.551 6.551 12 N -0.595 5.595 13 C 0.060 3.940 14 C 0.135 3.865 15 C -0.077 4.077 16 C -0.112 4.112 17 C -0.127 4.127 18 C 0.164 3.836 19 N -0.739 5.739 20 C -0.243 4.243 21 H 0.074 0.926 22 C -0.076 4.076 23 N -0.970 5.970 24 Si 0.972 3.028 25 H -0.281 1.281 26 H -0.296 1.296 27 H -0.276 1.276 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.233 0.767 36 H 0.201 0.799 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.110 0.890 41 H 0.074 0.926 42 H 0.049 0.951 43 H 0.030 0.970 44 H 0.040 0.960 45 H 0.067 0.933 46 H 0.030 0.970 47 H 0.066 0.934 48 H 0.030 0.970 49 H 0.011 0.989 50 H 0.375 0.625 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.933 -5.327 24.548 25.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.083 4.083 3 C -0.192 4.192 4 C 0.079 3.921 5 N -0.239 5.239 6 C 0.024 3.976 7 N -0.244 5.244 8 C 0.024 3.976 9 C -0.255 4.255 10 C 0.354 3.646 11 O -0.430 6.430 12 N -0.326 5.326 13 C -0.081 4.081 14 C 0.012 3.988 15 C -0.079 4.079 16 C -0.170 4.170 17 C -0.184 4.184 18 C 0.037 3.963 19 N -0.382 5.382 20 C -0.375 4.375 21 H 0.092 0.908 22 C -0.268 4.268 23 N -0.621 5.621 24 Si 0.801 3.199 25 H -0.207 1.207 26 H -0.223 1.223 27 H -0.202 1.202 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.249 0.751 36 H 0.217 0.783 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.085 0.915 40 H 0.129 0.871 41 H 0.093 0.907 42 H 0.068 0.932 43 H 0.049 0.951 44 H 0.059 0.941 45 H 0.086 0.914 46 H 0.050 0.950 47 H 0.085 0.915 48 H 0.048 0.952 49 H 0.029 0.971 50 H 0.209 0.791 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.542 -5.100 24.900 26.246 hybrid contribution 0.375 0.167 -2.082 2.122 sum -6.167 -4.933 22.819 24.147 Atomic orbital electron populations 1.21639 0.92136 1.01681 1.03076 1.20424 0.98062 0.96964 0.92890 1.21734 1.00387 0.93794 1.03300 1.21847 0.86847 0.89205 0.94225 1.68334 1.21901 1.35148 0.98557 1.25907 0.86379 0.86909 0.98355 1.68583 1.15790 1.11863 1.28163 1.23960 0.89907 0.98243 0.85483 1.21586 1.07090 1.00253 0.96556 1.17996 0.82961 0.77794 0.85819 1.90814 1.44624 1.56021 1.51536 1.47695 1.08941 1.62625 1.13347 1.22381 0.90836 1.03043 0.91887 1.21466 1.02353 0.94658 0.80335 1.21017 0.95961 0.96333 0.94556 1.21615 0.97420 0.98143 0.99801 1.21795 0.96247 1.00383 1.00005 1.20726 0.96202 0.90333 0.89054 1.42563 1.81160 1.06566 1.07937 1.19609 1.35989 0.93877 0.88023 0.90777 1.25522 1.03617 0.95300 1.02336 1.69812 1.56141 0.99469 1.36641 0.85235 0.78161 0.76264 0.80245 1.20716 1.22266 1.20240 0.91223 0.91039 0.93638 0.89806 0.93576 0.91312 0.90752 0.75077 0.78253 0.89039 0.88747 0.91477 0.87141 0.90716 0.93177 0.95118 0.94128 0.91410 0.95046 0.91469 0.95176 0.97088 0.79100 0.94121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.16 71.98 0.66 -2.16 16 2 C -0.06 -1.55 2.85 -11.54 -0.03 -1.58 16 3 C -0.13 -2.94 9.05 71.98 0.65 -2.29 16 4 C 0.23 5.11 5.52 42.92 0.24 5.35 16 5 N -0.53 -10.51 9.98 -187.06 -1.87 -12.38 16 6 C 0.31 4.79 12.27 180.84 2.22 7.01 16 7 N -0.53 -8.58 10.42 -198.97 -2.07 -10.65 16 8 C 0.19 3.00 9.11 85.06 0.77 3.78 16 9 C -0.25 -5.22 4.90 -19.91 -0.10 -5.32 16 10 C 0.57 13.91 4.86 86.78 0.42 14.33 16 11 O -0.55 -17.60 13.45 -3.88 -0.05 -17.65 16 12 N -0.60 -11.94 2.40 -850.25 -2.04 -13.98 16 13 C 0.06 0.73 7.82 127.77 1.00 1.73 16 14 C 0.13 3.19 4.59 86.38 0.40 3.59 16 15 C -0.08 -2.40 0.60 -52.18 -0.03 -2.43 16 16 C -0.11 -3.99 7.04 71.98 0.51 -3.48 16 17 C -0.13 -3.68 7.07 71.98 0.51 -3.17 16 18 C 0.16 6.47 5.15 86.38 0.44 6.91 16 19 N -0.74 -37.57 5.01 -343.45 -1.72 -39.28 16 20 C -0.24 -13.69 9.99 84.03 0.84 -12.85 16 21 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 22 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 23 N -0.97 -59.90 13.06 21.65 0.28 -59.61 16 24 Si 0.97 46.63 29.55 68.60 2.03 48.66 16 25 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 26 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 27 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 2.44 4.22 -2.38 -0.01 2.43 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 1.49 7.97 -2.39 -0.02 1.47 16 35 H 0.23 1.75 8.06 -2.91 -0.02 1.72 16 36 H 0.20 1.86 6.41 -2.91 -0.02 1.84 16 37 H 0.09 0.57 7.11 -2.39 -0.02 0.55 16 38 H 0.09 1.07 6.29 -2.39 -0.02 1.05 16 39 H 0.07 0.83 6.30 -2.39 -0.02 0.81 16 40 H 0.11 1.99 8.07 -2.38 -0.02 1.97 16 41 H 0.07 2.03 7.36 -2.39 -0.02 2.01 16 42 H 0.05 1.62 4.82 -2.39 -0.01 1.61 16 43 H 0.03 1.26 6.86 -2.39 -0.02 1.24 16 44 H 0.04 1.55 7.84 -2.39 -0.02 1.53 16 45 H 0.07 1.73 8.07 -2.38 -0.02 1.71 16 46 H 0.03 1.14 6.86 -2.39 -0.02 1.13 16 47 H 0.07 1.61 6.07 -2.39 -0.01 1.60 16 48 H 0.03 1.13 8.14 -2.39 -0.02 1.12 16 49 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 50 H 0.38 20.38 5.36 -92.71 -0.50 19.88 16 51 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -72.64 391.48 3.97 -68.67 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.44 Total: 30.73 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 8.96 Total: 5.50 kcal Atomic # 7 Polarization: -128.49 SS G_CDS: -7.42 Total: -135.91 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.05 Total: -17.65 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -72.64 3.97 -68.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734025021.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.577 kcal (2) G-P(sol) polarization free energy of solvation -72.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds