Wall clock time and date at job start Tue Mar 31 2020 19:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47202 * 2 1 4 4 C 1.50700 * 109.47154 * 120.00193 * 2 1 3 5 5 N 1.32161 * 120.53720 * 332.18056 * 4 2 1 6 6 C 1.31856 * 120.96548 * 180.31298 * 5 4 2 7 7 N 1.31880 * 122.09623 * 359.65351 * 6 5 4 8 8 C 1.32132 * 120.96701 * 0.02562 * 7 6 5 9 9 C 1.39927 * 120.53576 * 151.86936 * 4 2 1 10 10 C 1.47824 * 120.94185 * 359.97438 * 9 4 2 11 11 O 1.21558 * 120.00070 * 5.72833 * 10 9 4 12 12 N 1.34783 * 120.00066 * 185.72784 * 10 9 4 13 13 C 1.46499 * 119.99931 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47018 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47141 * 180.02562 * 14 13 12 16 16 H 1.08995 * 109.47393 * 305.00192 * 15 14 13 17 17 N 1.46508 * 109.47069 * 65.00095 * 15 14 13 18 18 C 1.36938 * 119.99892 * 205.00364 * 17 15 14 19 19 H 1.08001 * 119.99851 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00096 * 179.72475 * 18 17 15 21 21 N 1.31624 * 119.99724 * 0.27257 * 20 18 17 22 22 Si 1.86789 * 120.00315 * 180.26967 * 20 18 17 23 23 H 1.48509 * 109.46994 * 60.00059 * 22 20 18 24 24 H 1.48498 * 109.47312 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47277 * 300.00352 * 22 20 18 26 26 C 1.53004 * 109.47297 * 184.99895 * 15 14 13 27 27 C 1.52992 * 109.46925 * 180.02562 * 26 15 14 28 28 C 1.52999 * 109.47153 * 300.00128 * 26 15 14 29 29 H 1.08994 * 109.47166 * 299.99483 * 1 2 3 30 30 H 1.09001 * 109.47176 * 60.00034 * 1 2 3 31 31 H 1.09006 * 109.47144 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47024 * 240.00365 * 2 1 3 33 33 H 1.09000 * 109.47338 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47433 * 300.00390 * 3 2 1 35 35 H 1.09003 * 109.46833 * 60.00248 * 3 2 1 36 36 H 1.08000 * 118.94890 * 179.67318 * 6 5 4 37 37 H 1.08006 * 120.53484 * 180.02562 * 8 7 6 38 38 H 0.96996 * 119.99956 * 0.02562 * 12 10 9 39 39 H 1.09002 * 109.46950 * 60.00038 * 13 12 10 40 40 H 1.08995 * 109.47352 * 300.00232 * 13 12 10 41 41 H 1.09002 * 109.47230 * 60.00207 * 14 13 12 42 42 H 1.09001 * 109.46766 * 299.99795 * 14 13 12 43 43 H 0.96996 * 119.99871 * 25.00136 * 17 15 14 44 44 H 0.96995 * 119.99701 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.46758 * 59.99945 * 26 15 14 46 46 H 1.09000 * 109.47523 * 60.00321 * 27 26 15 47 47 H 1.09006 * 109.46888 * 180.02562 * 27 26 15 48 48 H 1.09002 * 109.47708 * 299.99812 * 27 26 15 49 49 H 1.09006 * 109.47283 * 59.99678 * 28 26 15 50 50 H 1.08993 * 109.47051 * 179.97438 * 28 26 15 51 51 H 1.09004 * 109.47105 * 300.00349 * 28 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.3070 -0.7348 2.3350 6 6 1.7410 -1.3486 3.4182 7 7 2.9044 -1.9687 3.4537 8 6 3.6911 -1.9994 2.3925 9 6 3.2714 -1.3605 1.2200 10 6 4.1157 -1.3677 0.0066 11 8 3.7868 -0.7177 -0.9666 12 7 5.2502 -2.0948 -0.0207 13 6 6.0867 -2.1023 -1.2234 14 6 7.3041 -2.9998 -0.9923 15 6 8.1780 -3.0071 -2.2481 16 1 7.5767 -3.3032 -3.1076 17 7 8.7225 -1.6655 -2.4720 18 6 9.0869 -1.2762 -3.7333 19 1 8.9733 -1.9583 -4.5629 20 6 9.5974 -0.0031 -3.9464 21 7 9.7362 0.8280 -2.9353 22 14 10.0874 0.5306 -5.6681 23 1 8.9038 0.4644 -6.5625 24 1 10.5992 1.9240 -5.6275 25 1 11.1481 -0.3721 -6.1831 26 6 9.3277 -3.9998 -2.0637 27 6 10.2019 -4.0066 -3.3193 28 6 10.1719 -3.5841 -0.8573 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 1.1239 -1.3437 4.3045 37 1 4.6423 -2.5096 2.4292 38 1 5.5125 -2.6138 0.7557 39 1 6.4192 -1.0873 -1.4410 40 1 5.5091 -2.4838 -2.0653 41 1 6.9713 -4.0147 -0.7749 42 1 7.8818 -2.6186 -0.1503 43 1 8.8248 -1.0531 -1.7269 44 1 10.0926 1.7177 -3.0842 45 1 8.9226 -4.9979 -1.8971 46 1 10.6070 -3.0084 -3.4854 47 1 11.0206 -4.7141 -3.1881 48 1 9.6008 -4.3025 -4.1791 49 1 9.5492 -3.5788 0.0374 50 1 10.9905 -4.2915 -0.7257 51 1 10.5768 -2.5859 -1.0239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734290554.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:31 Heat of formation + Delta-G solvation = 5.088801 kcal Electronic energy + Delta-G solvation = -29282.512183 eV Core-core repulsion = 25409.830873 eV Total energy + Delta-G solvation = -3872.681310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.63341 -39.38200 -37.58595 -36.34608 -34.72801 -33.38205 -32.85268 -32.12455 -30.86143 -29.32297 -27.22104 -26.55715 -25.93024 -25.16950 -24.51560 -23.08865 -21.40691 -21.19696 -20.77648 -18.71439 -18.05279 -17.80735 -17.15766 -16.99058 -15.83133 -15.58118 -15.15784 -14.75144 -14.64359 -14.49689 -14.18442 -14.15652 -13.78233 -13.70345 -13.44812 -13.17624 -12.99544 -12.63334 -12.46278 -12.20764 -11.89651 -11.64949 -11.41767 -11.37946 -11.34098 -11.23152 -11.11919 -10.87292 -10.85359 -10.77951 -10.71846 -10.35573 -10.22554 -10.07765 -9.92756 -9.87697 -9.57490 -9.55187 -9.42230 -8.95827 -8.82532 -6.94041 -5.75648 -3.02950 0.18171 0.71692 2.74560 3.04685 3.44542 3.49900 3.50448 3.52762 3.69915 3.73840 4.01034 4.45261 4.60023 4.61495 4.90586 4.98995 5.06740 5.19053 5.20681 5.33945 5.47299 5.54128 5.60335 5.63560 5.71569 5.77838 5.78562 5.84328 5.91851 5.93266 5.99162 6.05147 6.14320 6.21054 6.26279 6.29048 6.33802 6.38488 6.50358 6.58688 6.60816 6.63573 6.70447 6.83816 6.84429 7.05909 7.36120 7.42730 7.70225 7.72155 8.13657 8.42531 9.54288 10.10376 10.45367 11.46655 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012955 B = 0.002838 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.814126 B = 9863.672671 C =11341.257246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.062 4.062 3 C -0.129 4.129 4 C 0.242 3.758 5 N -0.519 5.519 6 C 0.312 3.688 7 N -0.528 5.528 8 C 0.183 3.817 9 C -0.239 4.239 10 C 0.561 3.439 11 O -0.515 6.515 12 N -0.720 5.720 13 C 0.123 3.877 14 C -0.136 4.136 15 C 0.184 3.816 16 H 0.049 0.951 17 N -0.717 5.717 18 C -0.232 4.232 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.900 3.100 23 H -0.287 1.287 24 H -0.293 1.293 25 H -0.287 1.287 26 C -0.109 4.109 27 C -0.142 4.142 28 C -0.139 4.139 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.124 0.876 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.200 0.800 37 H 0.171 0.829 38 H 0.394 0.606 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.045 0.955 46 H 0.088 0.912 47 H 0.028 0.972 48 H 0.039 0.961 49 H 0.041 0.959 50 H 0.035 0.965 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.087 -7.518 11.852 19.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.081 4.081 3 C -0.187 4.187 4 C 0.096 3.904 5 N -0.232 5.232 6 C 0.025 3.975 7 N -0.242 5.242 8 C 0.016 3.984 9 C -0.247 4.247 10 C 0.346 3.654 11 O -0.392 6.392 12 N -0.371 5.371 13 C 0.001 3.999 14 C -0.174 4.174 15 C 0.073 3.927 16 H 0.067 0.933 17 N -0.359 5.359 18 C -0.363 4.363 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.732 3.268 23 H -0.213 1.213 24 H -0.219 1.219 25 H -0.214 1.214 26 C -0.130 4.130 27 C -0.199 4.199 28 C -0.196 4.196 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.142 0.858 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.216 0.784 37 H 0.188 0.812 38 H 0.228 0.772 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.107 0.893 47 H 0.048 0.952 48 H 0.058 0.942 49 H 0.060 0.940 50 H 0.054 0.946 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.852 -7.004 11.768 20.202 hybrid contribution 1.147 0.115 -0.829 1.419 sum -13.706 -6.889 10.939 18.841 Atomic orbital electron populations 1.21749 0.93796 1.01749 1.02239 1.20630 0.96336 0.97131 0.93960 1.21639 1.01992 0.93289 1.01788 1.22038 0.87423 0.87193 0.93777 1.68371 1.35433 1.19532 0.99883 1.25221 0.89845 0.86588 0.95799 1.68433 1.06201 1.19708 1.29862 1.23468 0.97784 0.90359 0.86799 1.21730 0.99350 1.06032 0.97595 1.17720 0.81076 0.80098 0.86508 1.90762 1.70574 1.42080 1.35824 1.46035 1.23567 1.48866 1.18594 1.21537 0.90369 1.02791 0.85250 1.22114 0.95860 0.98543 1.00905 1.20177 0.91415 0.87465 0.93626 0.93310 1.42394 1.75485 1.10162 1.07838 1.19133 1.34300 0.96714 0.86125 0.91143 1.24683 1.02445 0.96742 0.96919 1.69634 1.51687 1.07389 1.29288 0.86369 0.78303 0.77539 0.84600 1.21342 1.21858 1.21385 1.21685 0.97881 0.97812 0.95651 1.21852 0.98270 1.03363 0.96445 1.21756 0.98725 1.02200 0.96911 0.91658 0.92228 0.93159 0.85838 0.91867 0.91414 0.93150 0.78351 0.81216 0.77180 0.89305 0.91523 0.91951 0.91206 0.78269 0.93573 0.93651 0.89342 0.95243 0.94206 0.93977 0.94603 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.74 37.16 0.32 -1.06 16 2 C -0.06 -0.74 2.39 -91.77 -0.22 -0.96 16 3 C -0.13 -1.54 8.88 37.16 0.33 -1.21 16 4 C 0.24 2.93 5.83 -81.82 -0.48 2.45 16 5 N -0.52 -5.74 9.34 -10.48 -0.10 -5.84 16 6 C 0.31 2.94 12.27 -92.03 -1.13 1.81 16 7 N -0.53 -5.36 10.42 -14.24 -0.15 -5.51 16 8 C 0.18 1.78 10.80 -16.77 -0.18 1.60 16 9 C -0.24 -2.81 5.91 -104.69 -0.62 -3.43 16 10 C 0.56 7.65 7.73 -12.34 -0.10 7.56 16 11 O -0.52 -8.65 12.43 5.31 0.07 -8.59 16 12 N -0.72 -8.64 5.51 -61.26 -0.34 -8.98 16 13 C 0.12 1.83 5.56 -4.04 -0.02 1.81 16 14 C -0.14 -1.87 4.36 -26.73 -0.12 -1.99 16 15 C 0.18 3.22 2.19 -67.92 -0.15 3.07 16 16 H 0.05 0.90 8.08 -51.93 -0.42 0.49 16 17 N -0.72 -15.95 3.69 -53.42 -0.20 -16.14 16 18 C -0.23 -5.90 7.57 -15.06 -0.11 -6.02 16 19 H 0.07 1.77 7.39 -52.49 -0.39 1.38 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -27.00 13.06 55.49 0.72 -26.27 16 22 Si 0.90 21.92 29.55 -169.99 -5.02 16.89 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 26 C -0.11 -1.77 2.80 -90.62 -0.25 -2.02 16 27 C -0.14 -2.53 8.26 37.15 0.31 -2.22 16 28 C -0.14 -2.19 8.68 37.16 0.32 -1.87 16 29 H 0.06 0.65 7.80 -51.93 -0.40 0.24 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.12 1.69 5.62 -51.93 -0.29 1.39 16 33 H 0.06 0.88 7.35 -51.93 -0.38 0.50 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.20 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.17 1.12 6.58 -52.48 -0.35 0.78 16 38 H 0.39 3.44 6.65 -40.82 -0.27 3.17 16 39 H 0.09 1.68 7.75 -51.93 -0.40 1.28 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.95 6.71 -51.93 -0.35 0.61 16 43 H 0.38 9.25 7.80 -40.82 -0.32 8.93 16 44 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.09 1.88 6.01 -51.93 -0.31 1.57 16 47 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.04 0.58 6.55 -51.93 -0.34 0.24 16 50 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.07 1.30 7.60 -51.93 -0.39 0.91 16 LS Contribution 402.45 15.07 6.06 6.06 Total: -1.00 -30.29 402.45 -9.54 -39.83 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -8.40 Total: 11.44 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -2.19 Total: -2.89 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: -0.06 Total: -62.75 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.07 Total: -8.59 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.29 -9.54 -39.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734290554.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.917 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds