Wall clock time and date at job start Tue Mar 31 2020 19:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47202 * 2 1 4 4 C 1.50700 * 109.47154 * 120.00193 * 2 1 3 5 5 N 1.32161 * 120.53720 * 332.18056 * 4 2 1 6 6 C 1.31856 * 120.96548 * 180.31298 * 5 4 2 7 7 N 1.31880 * 122.09623 * 359.65351 * 6 5 4 8 8 C 1.32132 * 120.96701 * 0.02562 * 7 6 5 9 9 C 1.39927 * 120.53576 * 151.86936 * 4 2 1 10 10 C 1.47824 * 120.94185 * 359.97438 * 9 4 2 11 11 O 1.21558 * 120.00070 * 5.72833 * 10 9 4 12 12 N 1.34783 * 120.00066 * 185.72784 * 10 9 4 13 13 C 1.46499 * 119.99931 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47018 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47141 * 180.02562 * 14 13 12 16 16 H 1.08995 * 109.47393 * 305.00192 * 15 14 13 17 17 N 1.46508 * 109.47069 * 65.00095 * 15 14 13 18 18 C 1.36938 * 119.99892 * 205.00364 * 17 15 14 19 19 H 1.08001 * 119.99851 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00096 * 179.72475 * 18 17 15 21 21 N 1.31624 * 119.99724 * 0.27257 * 20 18 17 22 22 Si 1.86789 * 120.00315 * 180.26967 * 20 18 17 23 23 H 1.48509 * 109.46994 * 60.00059 * 22 20 18 24 24 H 1.48498 * 109.47312 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47277 * 300.00352 * 22 20 18 26 26 C 1.53004 * 109.47297 * 184.99895 * 15 14 13 27 27 C 1.52992 * 109.46925 * 180.02562 * 26 15 14 28 28 C 1.52999 * 109.47153 * 300.00128 * 26 15 14 29 29 H 1.08994 * 109.47166 * 299.99483 * 1 2 3 30 30 H 1.09001 * 109.47176 * 60.00034 * 1 2 3 31 31 H 1.09006 * 109.47144 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47024 * 240.00365 * 2 1 3 33 33 H 1.09000 * 109.47338 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47433 * 300.00390 * 3 2 1 35 35 H 1.09003 * 109.46833 * 60.00248 * 3 2 1 36 36 H 1.08000 * 118.94890 * 179.67318 * 6 5 4 37 37 H 1.08006 * 120.53484 * 180.02562 * 8 7 6 38 38 H 0.96996 * 119.99956 * 0.02562 * 12 10 9 39 39 H 1.09002 * 109.46950 * 60.00038 * 13 12 10 40 40 H 1.08995 * 109.47352 * 300.00232 * 13 12 10 41 41 H 1.09002 * 109.47230 * 60.00207 * 14 13 12 42 42 H 1.09001 * 109.46766 * 299.99795 * 14 13 12 43 43 H 0.96996 * 119.99871 * 25.00136 * 17 15 14 44 44 H 0.96995 * 119.99701 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.46758 * 59.99945 * 26 15 14 46 46 H 1.09000 * 109.47523 * 60.00321 * 27 26 15 47 47 H 1.09006 * 109.46888 * 180.02562 * 27 26 15 48 48 H 1.09002 * 109.47708 * 299.99812 * 27 26 15 49 49 H 1.09006 * 109.47283 * 59.99678 * 28 26 15 50 50 H 1.08993 * 109.47051 * 179.97438 * 28 26 15 51 51 H 1.09004 * 109.47105 * 300.00349 * 28 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.3070 -0.7348 2.3350 6 6 1.7410 -1.3486 3.4182 7 7 2.9044 -1.9687 3.4537 8 6 3.6911 -1.9994 2.3925 9 6 3.2714 -1.3605 1.2200 10 6 4.1157 -1.3677 0.0066 11 8 3.7868 -0.7177 -0.9666 12 7 5.2502 -2.0948 -0.0207 13 6 6.0867 -2.1023 -1.2234 14 6 7.3041 -2.9998 -0.9923 15 6 8.1780 -3.0071 -2.2481 16 1 7.5767 -3.3032 -3.1076 17 7 8.7225 -1.6655 -2.4720 18 6 9.0869 -1.2762 -3.7333 19 1 8.9733 -1.9583 -4.5629 20 6 9.5974 -0.0031 -3.9464 21 7 9.7362 0.8280 -2.9353 22 14 10.0874 0.5306 -5.6681 23 1 8.9038 0.4644 -6.5625 24 1 10.5992 1.9240 -5.6275 25 1 11.1481 -0.3721 -6.1831 26 6 9.3277 -3.9998 -2.0637 27 6 10.2019 -4.0066 -3.3193 28 6 10.1719 -3.5841 -0.8573 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 1.1239 -1.3437 4.3045 37 1 4.6423 -2.5096 2.4292 38 1 5.5125 -2.6138 0.7557 39 1 6.4192 -1.0873 -1.4410 40 1 5.5091 -2.4838 -2.0653 41 1 6.9713 -4.0147 -0.7749 42 1 7.8818 -2.6186 -0.1503 43 1 8.8248 -1.0531 -1.7269 44 1 10.0926 1.7177 -3.0842 45 1 8.9226 -4.9979 -1.8971 46 1 10.6070 -3.0084 -3.4854 47 1 11.0206 -4.7141 -3.1881 48 1 9.6008 -4.3025 -4.1791 49 1 9.5492 -3.5788 0.0374 50 1 10.9905 -4.2915 -0.7257 51 1 10.5768 -2.5859 -1.0239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734290554.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:30 Heat of formation + Delta-G solvation = -13.122872 kcal Electronic energy + Delta-G solvation = -29283.301900 eV Core-core repulsion = 25409.830873 eV Total energy + Delta-G solvation = -3873.471028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.48228 -40.44999 -38.99971 -37.26762 -35.90353 -34.70654 -34.23209 -33.09979 -32.20998 -30.93422 -28.11365 -27.89686 -27.18704 -26.05713 -25.71470 -24.76523 -22.64440 -22.20111 -21.73967 -20.12811 -19.20784 -18.87491 -18.70803 -17.82630 -16.99826 -16.66774 -16.48240 -16.11948 -15.78613 -15.57126 -15.45125 -15.25439 -15.03043 -14.94121 -14.69757 -14.42667 -14.07310 -13.99077 -13.92505 -13.07123 -13.02124 -12.88815 -12.78787 -12.68304 -12.54852 -12.48665 -12.41495 -12.26814 -12.25989 -12.06654 -12.02855 -11.79557 -11.73116 -11.62825 -11.22339 -11.11392 -10.80904 -10.76571 -10.64833 -10.36090 -10.06461 -8.84595 -7.84346 -5.07173 -0.65004 -0.10259 1.48116 1.49448 1.54285 1.74809 2.00570 2.62148 2.68392 2.89389 3.04450 3.22358 3.49482 3.57518 3.72707 3.94519 4.02474 4.10542 4.14003 4.19386 4.22943 4.37870 4.40984 4.44785 4.52288 4.63567 4.70071 4.77194 4.86116 4.91901 4.93773 4.95313 5.01450 5.08012 5.09923 5.17403 5.21998 5.24375 5.30051 5.34159 5.41241 5.45595 5.48901 5.49989 5.62245 5.70425 5.79665 5.89380 6.38389 6.44678 6.91366 7.13172 7.45807 8.24164 8.45461 9.38985 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012955 B = 0.002838 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.814126 B = 9863.672671 C =11341.257246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.123 4.123 4 C 0.231 3.769 5 N -0.528 5.528 6 C 0.316 3.684 7 N -0.535 5.535 8 C 0.195 3.805 9 C -0.255 4.255 10 C 0.559 3.441 11 O -0.555 6.555 12 N -0.704 5.704 13 C 0.135 3.865 14 C -0.121 4.121 15 C 0.176 3.824 16 H 0.040 0.960 17 N -0.723 5.723 18 C -0.207 4.207 19 H 0.073 0.927 20 C -0.077 4.077 21 N -0.969 5.969 22 Si 0.952 3.048 23 H -0.285 1.285 24 H -0.303 1.303 25 H -0.280 1.280 26 C -0.104 4.104 27 C -0.141 4.141 28 C -0.133 4.133 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.103 0.897 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.235 0.765 37 H 0.202 0.798 38 H 0.414 0.586 39 H 0.042 0.958 40 H 0.055 0.945 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.372 0.628 44 H 0.244 0.756 45 H 0.081 0.919 46 H 0.046 0.954 47 H 0.048 0.952 48 H 0.039 0.961 49 H 0.065 0.935 50 H 0.050 0.950 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.001 -10.264 13.790 22.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.082 4.082 3 C -0.181 4.181 4 C 0.085 3.915 5 N -0.242 5.242 6 C 0.030 3.970 7 N -0.248 5.248 8 C 0.027 3.973 9 C -0.263 4.263 10 C 0.346 3.654 11 O -0.435 6.435 12 N -0.356 5.356 13 C 0.012 3.988 14 C -0.159 4.159 15 C 0.067 3.933 16 H 0.058 0.942 17 N -0.363 5.363 18 C -0.339 4.339 19 H 0.091 0.909 20 C -0.269 4.269 21 N -0.621 5.621 22 Si 0.783 3.217 23 H -0.212 1.212 24 H -0.230 1.230 25 H -0.207 1.207 26 C -0.125 4.125 27 C -0.198 4.198 28 C -0.190 4.190 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.120 0.880 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.251 0.749 37 H 0.219 0.781 38 H 0.251 0.749 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.122 0.878 42 H 0.095 0.905 43 H 0.204 0.796 44 H 0.053 0.947 45 H 0.100 0.900 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.058 0.942 49 H 0.084 0.916 50 H 0.069 0.931 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -15.776 -9.829 13.726 23.106 hybrid contribution 1.375 0.847 -1.376 2.122 sum -14.401 -8.982 12.350 20.990 Atomic orbital electron populations 1.21678 0.92268 1.01938 1.02783 1.20543 0.97539 0.96610 0.93495 1.21570 1.00208 0.93884 1.02451 1.22086 0.87864 0.87375 0.94174 1.68428 1.35484 1.20277 0.99997 1.25988 0.89869 0.84964 0.96205 1.68565 1.06543 1.20046 1.29668 1.23933 0.98582 0.89097 0.85653 1.21569 0.99297 1.07841 0.97558 1.18062 0.81278 0.79413 0.86695 1.90753 1.71579 1.43675 1.37445 1.45762 1.22679 1.48770 1.18432 1.21165 0.91086 1.00347 0.86212 1.21987 0.94403 1.00511 0.99006 1.20443 0.92276 0.85308 0.95251 0.94228 1.42527 1.75393 1.12063 1.06306 1.19422 1.31043 0.96018 0.87463 0.90929 1.25283 1.04564 0.97527 0.99526 1.69775 1.54279 1.07305 1.30730 0.85520 0.78014 0.76558 0.81615 1.21181 1.22968 1.20697 1.21623 0.96876 0.98930 0.95044 1.21797 0.99175 1.01346 0.97511 1.21690 0.99482 1.00239 0.97616 0.91357 0.91374 0.93098 0.87953 0.94469 0.90877 0.92281 0.74874 0.78117 0.74858 0.93960 0.92653 0.87810 0.90479 0.79556 0.94690 0.90047 0.93450 0.93292 0.94153 0.91572 0.93075 0.95172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.74 71.98 0.63 -1.89 16 2 C -0.06 -1.53 2.39 -11.54 -0.03 -1.55 16 3 C -0.12 -3.05 8.88 71.98 0.64 -2.41 16 4 C 0.23 5.46 5.83 42.92 0.25 5.71 16 5 N -0.53 -10.83 9.34 -187.07 -1.75 -12.58 16 6 C 0.32 5.10 12.27 180.84 2.22 7.31 16 7 N -0.53 -9.28 10.42 -198.97 -2.07 -11.35 16 8 C 0.19 3.29 10.80 85.07 0.92 4.20 16 9 C -0.25 -5.75 5.91 -19.91 -0.12 -5.87 16 10 C 0.56 15.28 7.73 86.78 0.67 15.95 16 11 O -0.55 -19.54 12.43 -3.90 -0.05 -19.59 16 12 N -0.70 -16.05 5.51 -465.99 -2.57 -18.62 16 13 C 0.14 4.00 5.56 86.38 0.48 4.48 16 14 C -0.12 -3.03 4.36 30.59 0.13 -2.89 16 15 C 0.18 5.92 2.19 44.99 0.10 6.02 16 16 H 0.04 1.42 8.08 -2.39 -0.02 1.40 16 17 N -0.72 -32.65 3.69 -322.92 -1.19 -33.84 16 18 C -0.21 -10.77 7.57 84.03 0.64 -10.14 16 19 H 0.07 3.69 7.39 -2.91 -0.02 3.67 16 20 C -0.08 -4.34 5.50 84.86 0.47 -3.88 16 21 N -0.97 -58.47 13.06 21.65 0.28 -58.19 16 22 Si 0.95 46.40 29.55 68.60 2.03 48.42 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 24 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 25 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 26 C -0.10 -3.09 2.80 -10.80 -0.03 -3.12 16 27 C -0.14 -4.80 8.26 71.98 0.59 -4.20 16 28 C -0.13 -3.87 8.68 71.98 0.62 -3.24 16 29 H 0.07 1.28 7.80 -2.39 -0.02 1.27 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.10 2.95 5.62 -2.39 -0.01 2.94 16 33 H 0.04 1.09 7.35 -2.39 -0.02 1.08 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.24 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.20 1.89 6.58 -2.91 -0.02 1.88 16 38 H 0.41 5.97 6.65 -92.71 -0.62 5.36 16 39 H 0.04 1.66 7.75 -2.39 -0.02 1.65 16 40 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 41 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.08 1.88 6.71 -2.39 -0.02 1.86 16 43 H 0.37 18.51 7.80 -92.71 -0.72 17.79 16 44 H 0.24 14.66 8.31 -92.71 -0.77 13.89 16 45 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.05 2.00 6.01 -2.39 -0.01 1.99 16 47 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 48 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.07 1.59 6.55 -2.38 -0.02 1.57 16 50 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.03 1.11 7.60 -2.39 -0.02 1.09 16 Total: -1.00 -69.78 402.45 2.47 -67.31 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: -0.40 Total: 33.95 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 8.19 Total: 4.49 kcal Atomic # 7 Polarization: -127.29 SS G_CDS: -7.30 Total: -134.58 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.05 Total: -19.59 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -69.78 2.47 -67.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734290554.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.189 kcal (2) G-P(sol) polarization free energy of solvation -69.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds