Wall clock time and date at job start Tue Mar 31 2020 17:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46791 * 2 1 4 4 C 1.39672 * 126.06265 * 125.00457 * 3 2 1 5 5 C 1.38413 * 105.35676 * 180.02562 * 4 3 2 6 6 C 1.47157 * 126.88387 * 180.02562 * 5 4 3 7 7 O 1.21633 * 120.00338 * 184.81177 * 6 5 4 8 8 N 1.34778 * 120.00039 * 4.80582 * 6 5 4 9 9 C 1.46503 * 119.99889 * 185.17697 * 8 6 5 10 10 C 1.53007 * 109.46737 * 180.02562 * 9 8 6 11 11 C 1.53006 * 109.46841 * 180.02562 * 10 9 8 12 12 C 1.52992 * 109.47177 * 174.91888 * 11 10 9 13 13 H 1.09002 * 109.87605 * 306.13635 * 12 11 10 14 14 C 1.54327 * 109.88379 * 67.30430 * 12 11 10 15 15 C 1.55160 * 102.94397 * 141.61007 * 14 12 11 16 16 C 1.54913 * 101.57965 * 324.50197 * 15 14 12 17 17 N 1.47022 * 109.88310 * 185.11564 * 12 11 10 18 18 C 1.36935 * 125.64976 * 61.60830 * 17 12 11 19 19 H 1.07998 * 119.99759 * 13.29357 * 18 17 12 20 20 C 1.38814 * 119.99903 * 193.29740 * 18 17 12 21 21 N 1.31617 * 120.00264 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99622 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47529 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47091 * 120.00315 * 22 20 18 25 25 H 1.48500 * 109.47036 * 239.99954 * 22 20 18 26 26 N 1.36603 * 106.23000 * 359.97438 * 5 4 3 27 27 C 1.46500 * 125.18479 * 180.26061 * 26 5 4 28 28 N 1.28441 * 109.61648 * 0.02562 * 26 5 4 29 29 H 1.08998 * 109.46748 * 299.99757 * 1 2 3 30 30 H 1.08998 * 109.47292 * 59.99356 * 1 2 3 31 31 H 1.09003 * 109.47219 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46661 * 240.00785 * 2 1 3 33 33 H 1.08998 * 109.47292 * 120.00643 * 2 1 3 34 34 H 1.08000 * 127.32693 * 0.05797 * 4 3 2 35 35 H 0.97001 * 120.00250 * 5.18699 * 8 6 5 36 36 H 1.09000 * 109.47082 * 300.00056 * 9 8 6 37 37 H 1.09000 * 109.46992 * 60.00376 * 9 8 6 38 38 H 1.09000 * 109.47194 * 299.99759 * 10 9 8 39 39 H 1.09000 * 109.47259 * 60.00311 * 10 9 8 40 40 H 1.09012 * 109.46911 * 294.91871 * 11 10 9 41 41 H 1.09002 * 109.47048 * 54.91376 * 11 10 9 42 42 H 1.08999 * 110.72264 * 259.97490 * 14 12 11 43 43 H 1.08998 * 110.71845 * 23.25223 * 14 12 11 44 44 H 1.08996 * 111.00395 * 206.42945 * 15 14 12 45 45 H 1.09003 * 111.03563 * 82.58565 * 15 14 12 46 46 H 1.09002 * 110.36863 * 278.16691 * 16 15 14 47 47 H 1.08999 * 110.36697 * 155.84405 * 16 15 14 48 48 H 0.96997 * 120.00065 * 180.02562 * 21 20 18 49 49 H 1.08999 * 109.47159 * 267.57276 * 27 26 5 50 50 H 1.08999 * 109.47111 * 27.57437 * 27 26 5 51 51 H 1.09005 * 109.46402 * 147.57642 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9170 1.9802 0.9248 5 6 3.0833 3.2946 0.5243 6 6 3.9242 4.3151 1.1702 7 8 3.9112 5.4610 0.7625 8 7 4.7086 3.9800 2.2137 9 6 5.4587 5.0158 2.9285 10 6 6.2634 4.3733 4.0602 11 6 7.0462 5.4551 4.8072 12 6 7.7501 4.8332 6.0148 13 1 7.0266 4.2997 6.6313 14 6 8.8532 3.8649 5.5381 15 6 9.9951 4.1088 6.5599 16 6 9.8565 5.6289 6.8242 17 7 8.4046 5.8840 6.8080 18 6 7.7706 6.9272 7.4283 19 1 6.6966 6.9159 7.5417 20 6 8.5083 7.9993 7.9113 21 7 9.8171 8.0134 7.7726 22 14 7.6433 9.4228 8.7569 23 1 6.1807 9.1677 8.7838 24 1 8.1491 9.5540 10.1469 25 1 7.9126 10.6787 8.0116 26 7 2.3115 3.4544 -0.5913 27 6 2.1855 4.6951 -1.3601 28 7 1.7169 2.3496 -0.8662 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.3745 1.4910 1.7721 35 1 4.7768 3.0531 2.4913 36 1 6.1384 5.5144 2.2375 37 1 4.7640 5.7453 3.3449 38 1 5.5840 3.8744 4.7513 39 1 6.9581 3.6440 3.6435 40 1 7.7886 5.8928 4.1395 41 1 6.3601 6.2312 5.1464 42 1 8.5071 2.8324 5.5858 43 1 9.1784 4.1176 4.5289 44 1 10.9663 3.8750 6.1237 45 1 9.8315 3.5369 7.4734 46 1 10.3504 6.1975 6.0362 47 1 10.2757 5.8845 7.7973 48 1 10.3326 8.7624 8.1105 49 1 1.3350 5.2674 -0.9896 50 1 3.0957 5.2847 -1.2502 51 1 2.0320 4.4563 -2.4125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753037043.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:33 Heat of formation + Delta-G solvation = 44.023719 kcal Electronic energy + Delta-G solvation = -28184.775342 eV Core-core repulsion = 24313.782376 eV Total energy + Delta-G solvation = -3870.992966 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.84522 -39.59291 -37.84887 -35.77111 -35.00763 -33.19422 -32.38209 -31.91555 -31.02382 -29.38294 -28.08609 -27.18925 -25.04483 -24.30199 -23.74128 -22.97423 -21.62750 -21.13467 -20.16330 -19.54677 -19.13913 -17.92471 -16.75436 -16.64622 -16.47393 -15.74524 -15.60296 -15.06336 -14.78218 -14.50820 -14.36711 -14.21248 -14.09876 -13.93316 -13.73970 -13.23484 -12.90709 -12.80003 -12.41508 -12.34922 -12.06065 -11.92195 -11.81675 -11.73602 -11.60747 -11.48613 -11.03854 -10.85246 -10.82910 -10.75263 -10.58500 -10.27837 -10.04599 -9.98755 -9.76938 -9.61692 -9.60728 -9.50171 -9.20123 -9.13779 -8.56919 -6.76523 -5.72432 -3.07362 0.98743 2.08818 2.24562 2.95865 3.00577 3.39573 3.45831 3.47761 4.11217 4.27007 4.49924 4.58310 4.79858 4.88631 4.95669 4.98594 5.00015 5.11385 5.13838 5.23936 5.33537 5.35947 5.42476 5.45286 5.57624 5.58433 5.60646 5.71882 5.77105 5.84471 5.89815 5.92211 5.99591 6.08461 6.16629 6.23988 6.31319 6.35037 6.42214 6.45054 6.57232 6.70186 6.73239 6.95294 7.16533 7.21154 7.57808 7.64641 7.76381 7.82948 7.90363 8.31467 9.22550 9.84213 10.53027 11.39559 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016623 B = 0.001985 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.058390 B =14099.761038 C =14905.608885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.036 4.036 3 C 0.025 3.975 4 C -0.187 4.187 5 C -0.035 4.035 6 C 0.588 3.412 7 O -0.541 6.541 8 N -0.711 5.711 9 C 0.120 3.880 10 C -0.128 4.128 11 C -0.122 4.122 12 C 0.162 3.838 13 H 0.031 0.969 14 C -0.124 4.124 15 C -0.151 4.151 16 C 0.172 3.828 17 N -0.597 5.597 18 C -0.224 4.224 19 H 0.075 0.925 20 C -0.007 4.007 21 N -0.918 5.918 22 Si 0.908 3.092 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.290 1.290 26 N -0.257 5.257 27 C 0.085 3.915 28 N -0.275 5.275 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.161 0.839 35 H 0.403 0.597 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.022 0.978 47 H 0.071 0.929 48 H 0.252 0.748 49 H 0.085 0.915 50 H 0.111 0.889 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.298 -16.011 -15.956 26.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.075 4.075 3 C -0.131 4.131 4 C -0.216 4.216 5 C -0.163 4.163 6 C 0.373 3.627 7 O -0.419 6.419 8 N -0.362 5.362 9 C -0.003 4.003 10 C -0.166 4.166 11 C -0.162 4.162 12 C 0.055 3.945 13 H 0.049 0.951 14 C -0.162 4.162 15 C -0.189 4.189 16 C 0.047 3.953 17 N -0.321 5.321 18 C -0.353 4.353 19 H 0.093 0.907 20 C -0.204 4.204 21 N -0.565 5.565 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.217 1.217 26 N -0.044 5.044 27 C -0.055 4.055 28 N -0.109 5.109 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.178 0.822 35 H 0.238 0.762 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.040 0.960 47 H 0.090 0.910 48 H 0.062 0.938 49 H 0.103 0.897 50 H 0.130 0.870 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.887 -14.583 -17.144 26.447 hybrid contribution 0.090 0.401 1.207 1.275 sum -13.797 -14.182 -15.937 25.406 Atomic orbital electron populations 1.21717 0.94585 1.01703 1.02466 1.19879 0.96204 0.88326 1.03113 1.21985 1.00110 0.96685 0.94310 1.22135 1.03967 0.92378 1.03092 1.21438 1.03414 0.96596 0.94886 1.16923 0.79305 0.86344 0.80153 1.90800 1.67095 1.20319 1.63657 1.45789 1.46248 1.12252 1.31871 1.21606 0.94818 0.89972 0.93918 1.21850 0.98773 0.99758 0.96231 1.22036 0.99112 0.97221 0.97853 1.20924 0.93158 0.89951 0.90491 0.95121 1.22592 0.96874 0.97952 0.98806 1.23016 0.96925 1.00916 0.98071 1.21433 0.85054 0.87798 1.01032 1.44561 1.02721 1.27661 1.57133 1.19013 0.91542 0.95161 1.29584 0.90725 1.24883 0.95804 0.97946 1.01737 1.69946 1.04255 1.31429 1.50917 0.86101 0.78619 0.82601 0.78802 1.20468 1.21809 1.21749 1.45561 1.30139 1.09559 1.19114 1.22370 1.05924 0.81236 0.95960 1.73091 1.19555 0.92672 1.25576 0.92701 0.92189 0.92239 0.90451 0.89935 0.82167 0.76198 0.91031 0.91043 0.91574 0.91555 0.92195 0.91583 0.92630 0.92053 0.92581 0.92493 0.95969 0.91025 0.93804 0.89670 0.87027 0.88949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.87 37.16 0.37 -0.58 16 2 C -0.04 -0.24 6.51 -27.88 -0.18 -0.42 16 3 C 0.03 0.25 6.49 -82.47 -0.54 -0.29 16 4 C -0.19 -1.73 10.42 -38.98 -0.41 -2.14 16 5 C -0.03 -0.39 6.96 -82.06 -0.57 -0.96 16 6 C 0.59 7.30 7.79 -12.64 -0.10 7.20 16 7 O -0.54 -8.24 14.71 5.25 0.08 -8.16 16 8 N -0.71 -7.45 5.54 -61.46 -0.34 -7.79 16 9 C 0.12 1.46 5.68 -4.04 -0.02 1.43 16 10 C -0.13 -1.55 5.10 -26.72 -0.14 -1.69 16 11 C -0.12 -2.07 4.71 -26.73 -0.13 -2.20 16 12 C 0.16 3.14 3.16 -66.96 -0.21 2.93 16 13 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 14 C -0.12 -2.05 5.70 -24.89 -0.14 -2.20 16 15 C -0.15 -2.79 7.09 -24.58 -0.17 -2.96 16 16 C 0.17 4.12 5.43 -2.52 -0.01 4.10 16 17 N -0.60 -14.74 3.13 -162.57 -0.51 -15.25 16 18 C -0.22 -6.11 9.72 -15.06 -0.15 -6.25 16 19 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 20 C -0.01 -0.20 5.47 -17.43 -0.10 -0.30 16 21 N -0.92 -26.81 10.52 55.49 0.58 -26.23 16 22 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 N -0.26 -2.89 3.75 -63.88 -0.24 -3.13 16 27 C 0.09 0.73 10.84 59.85 0.65 1.38 16 28 N -0.28 -3.12 11.87 33.64 0.40 -2.72 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.41 8.12 -51.93 -0.42 -0.02 16 34 H 0.16 1.00 7.62 -52.49 -0.40 0.60 16 35 H 0.40 3.11 7.55 -40.82 -0.31 2.81 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.73 7.64 -51.93 -0.40 0.33 16 40 H 0.06 1.09 8.02 -51.92 -0.42 0.67 16 41 H 0.07 1.25 7.84 -51.93 -0.41 0.84 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.97 7.77 -51.93 -0.40 0.57 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.02 0.58 8.09 -51.93 -0.42 0.16 16 47 H 0.07 1.92 6.83 -51.93 -0.35 1.57 16 48 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 49 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.11 1.05 6.29 -51.93 -0.33 0.73 16 51 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 409.10 15.07 6.17 6.17 Total: -1.00 -33.07 409.10 -9.63 -42.70 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -8.90 Total: 0.36 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -1.85 Total: -2.95 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.10 Total: -55.12 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.08 Total: -8.16 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.07 -9.63 -42.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753037043.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.722 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds