Wall clock time and date at job start Tue Mar 31 2020 17:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46791 * 2 1 4 4 C 1.39672 * 126.06265 * 125.00457 * 3 2 1 5 5 C 1.38413 * 105.35676 * 180.02562 * 4 3 2 6 6 C 1.47157 * 126.88387 * 180.02562 * 5 4 3 7 7 O 1.21633 * 120.00338 * 184.81177 * 6 5 4 8 8 N 1.34778 * 120.00039 * 4.80582 * 6 5 4 9 9 C 1.46503 * 119.99889 * 185.17697 * 8 6 5 10 10 C 1.53007 * 109.46737 * 180.02562 * 9 8 6 11 11 C 1.53006 * 109.46841 * 180.02562 * 10 9 8 12 12 C 1.52992 * 109.47177 * 174.91888 * 11 10 9 13 13 H 1.09002 * 109.87605 * 306.13635 * 12 11 10 14 14 C 1.54327 * 109.88379 * 67.30430 * 12 11 10 15 15 C 1.55160 * 102.94397 * 141.61007 * 14 12 11 16 16 C 1.54913 * 101.57965 * 324.50197 * 15 14 12 17 17 N 1.47022 * 109.88310 * 185.11564 * 12 11 10 18 18 C 1.36935 * 125.64976 * 61.60830 * 17 12 11 19 19 H 1.07998 * 119.99759 * 13.29357 * 18 17 12 20 20 C 1.38814 * 119.99903 * 193.29740 * 18 17 12 21 21 N 1.31617 * 120.00264 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99622 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47529 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47091 * 120.00315 * 22 20 18 25 25 H 1.48500 * 109.47036 * 239.99954 * 22 20 18 26 26 N 1.36603 * 106.23000 * 359.97438 * 5 4 3 27 27 C 1.46500 * 125.18479 * 180.26061 * 26 5 4 28 28 N 1.28441 * 109.61648 * 0.02562 * 26 5 4 29 29 H 1.08998 * 109.46748 * 299.99757 * 1 2 3 30 30 H 1.08998 * 109.47292 * 59.99356 * 1 2 3 31 31 H 1.09003 * 109.47219 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46661 * 240.00785 * 2 1 3 33 33 H 1.08998 * 109.47292 * 120.00643 * 2 1 3 34 34 H 1.08000 * 127.32693 * 0.05797 * 4 3 2 35 35 H 0.97001 * 120.00250 * 5.18699 * 8 6 5 36 36 H 1.09000 * 109.47082 * 300.00056 * 9 8 6 37 37 H 1.09000 * 109.46992 * 60.00376 * 9 8 6 38 38 H 1.09000 * 109.47194 * 299.99759 * 10 9 8 39 39 H 1.09000 * 109.47259 * 60.00311 * 10 9 8 40 40 H 1.09012 * 109.46911 * 294.91871 * 11 10 9 41 41 H 1.09002 * 109.47048 * 54.91376 * 11 10 9 42 42 H 1.08999 * 110.72264 * 259.97490 * 14 12 11 43 43 H 1.08998 * 110.71845 * 23.25223 * 14 12 11 44 44 H 1.08996 * 111.00395 * 206.42945 * 15 14 12 45 45 H 1.09003 * 111.03563 * 82.58565 * 15 14 12 46 46 H 1.09002 * 110.36863 * 278.16691 * 16 15 14 47 47 H 1.08999 * 110.36697 * 155.84405 * 16 15 14 48 48 H 0.96997 * 120.00065 * 180.02562 * 21 20 18 49 49 H 1.08999 * 109.47159 * 267.57276 * 27 26 5 50 50 H 1.08999 * 109.47111 * 27.57437 * 27 26 5 51 51 H 1.09005 * 109.46402 * 147.57642 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9170 1.9802 0.9248 5 6 3.0833 3.2946 0.5243 6 6 3.9242 4.3151 1.1702 7 8 3.9112 5.4610 0.7625 8 7 4.7086 3.9800 2.2137 9 6 5.4587 5.0158 2.9285 10 6 6.2634 4.3733 4.0602 11 6 7.0462 5.4551 4.8072 12 6 7.7501 4.8332 6.0148 13 1 7.0266 4.2997 6.6313 14 6 8.8532 3.8649 5.5381 15 6 9.9951 4.1088 6.5599 16 6 9.8565 5.6289 6.8242 17 7 8.4046 5.8840 6.8080 18 6 7.7706 6.9272 7.4283 19 1 6.6966 6.9159 7.5417 20 6 8.5083 7.9993 7.9113 21 7 9.8171 8.0134 7.7726 22 14 7.6433 9.4228 8.7569 23 1 6.1807 9.1677 8.7838 24 1 8.1491 9.5540 10.1469 25 1 7.9126 10.6787 8.0116 26 7 2.3115 3.4544 -0.5913 27 6 2.1855 4.6951 -1.3601 28 7 1.7169 2.3496 -0.8662 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.3745 1.4910 1.7721 35 1 4.7768 3.0531 2.4913 36 1 6.1384 5.5144 2.2375 37 1 4.7640 5.7453 3.3449 38 1 5.5840 3.8744 4.7513 39 1 6.9581 3.6440 3.6435 40 1 7.7886 5.8928 4.1395 41 1 6.3601 6.2312 5.1464 42 1 8.5071 2.8324 5.5858 43 1 9.1784 4.1176 4.5289 44 1 10.9663 3.8750 6.1237 45 1 9.8315 3.5369 7.4734 46 1 10.3504 6.1975 6.0362 47 1 10.2757 5.8845 7.7973 48 1 10.3326 8.7624 8.1105 49 1 1.3350 5.2674 -0.9896 50 1 3.0957 5.2847 -1.2502 51 1 2.0320 4.4563 -2.4125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753037043.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:31 Heat of formation + Delta-G solvation = 23.370989 kcal Electronic energy + Delta-G solvation = -28185.670912 eV Core-core repulsion = 24313.782376 eV Total energy + Delta-G solvation = -3871.888535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.59642 -40.56699 -39.43461 -36.83353 -35.68534 -34.72724 -33.86429 -32.65789 -31.90130 -31.19806 -29.41837 -27.87248 -26.66108 -25.87391 -24.30714 -23.98151 -22.74250 -21.97650 -21.84148 -20.81070 -20.29349 -18.77110 -18.60468 -17.44902 -17.38552 -16.95671 -16.65670 -16.54561 -16.03061 -15.70553 -15.48150 -15.24735 -15.06391 -14.78271 -14.66691 -14.31549 -13.91432 -13.87767 -13.68413 -13.55771 -13.43953 -13.11069 -12.98650 -12.98338 -12.76216 -12.65079 -12.34863 -12.23317 -12.16103 -11.95168 -11.81489 -11.67196 -11.52123 -11.49708 -11.30469 -11.23193 -11.09001 -10.65072 -10.40282 -10.03386 -9.87107 -8.76593 -7.83635 -5.18852 0.16709 1.34505 1.44491 1.45508 1.52905 1.55163 2.07744 2.14494 2.50578 3.34421 3.45533 3.49083 3.72051 3.91641 3.98918 4.03853 4.18961 4.23730 4.25921 4.28297 4.31035 4.37590 4.45427 4.48586 4.54057 4.58081 4.65136 4.74170 4.81939 4.84894 4.86740 4.88382 5.01515 5.06952 5.13869 5.15805 5.25593 5.25890 5.29861 5.38511 5.39562 5.52907 5.53306 5.55293 5.70781 5.74033 5.75098 5.82535 6.29521 6.36565 6.98568 7.06834 7.14602 7.84810 8.51405 9.27642 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016623 B = 0.001985 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.058390 B =14099.761038 C =14905.608885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.036 4.036 3 C 0.017 3.983 4 C -0.174 4.174 5 C -0.057 4.057 6 C 0.587 3.413 7 O -0.577 6.577 8 N -0.695 5.695 9 C 0.127 3.873 10 C -0.108 4.108 11 C -0.113 4.113 12 C 0.151 3.849 13 H 0.037 0.963 14 C -0.111 4.111 15 C -0.138 4.138 16 C 0.173 3.827 17 N -0.619 5.619 18 C -0.226 4.226 19 H 0.077 0.923 20 C -0.069 4.069 21 N -0.950 5.950 22 Si 0.970 3.030 23 H -0.266 1.266 24 H -0.293 1.293 25 H -0.296 1.296 26 N -0.269 5.269 27 C 0.083 3.917 28 N -0.295 5.295 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.194 0.806 35 H 0.420 0.580 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.042 0.958 41 H 0.037 0.963 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.063 0.937 46 H -0.011 1.011 47 H 0.031 0.969 48 H 0.245 0.755 49 H 0.089 0.911 50 H 0.100 0.900 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.488 -19.368 -16.370 29.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.075 4.075 3 C -0.139 4.139 4 C -0.203 4.203 5 C -0.185 4.185 6 C 0.373 3.627 7 O -0.458 6.458 8 N -0.346 5.346 9 C 0.004 3.996 10 C -0.147 4.147 11 C -0.153 4.153 12 C 0.045 3.955 13 H 0.055 0.945 14 C -0.149 4.149 15 C -0.177 4.177 16 C 0.048 3.952 17 N -0.344 5.344 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.262 4.262 21 N -0.600 5.600 22 Si 0.799 3.201 23 H -0.190 1.190 24 H -0.220 1.220 25 H -0.223 1.223 26 N -0.057 5.057 27 C -0.057 4.057 28 N -0.129 5.129 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.125 0.875 34 H 0.211 0.789 35 H 0.258 0.742 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.116 0.884 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.082 0.918 46 H 0.007 0.993 47 H 0.050 0.950 48 H 0.054 0.946 49 H 0.108 0.892 50 H 0.118 0.882 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.104 -18.002 -17.564 29.338 hybrid contribution 0.419 1.388 1.317 1.958 sum -14.685 -16.615 -16.247 27.490 Atomic orbital electron populations 1.21692 0.94664 1.02557 1.01317 1.20036 0.96073 0.86714 1.04627 1.22586 0.99839 0.97647 0.93846 1.22578 1.02966 0.91333 1.03400 1.21456 1.04251 0.97195 0.95625 1.17132 0.79289 0.86094 0.80188 1.90784 1.68287 1.21905 1.64819 1.45547 1.45316 1.12759 1.31028 1.21361 0.94371 0.90160 0.93757 1.21647 0.98895 0.98276 0.95859 1.21824 0.98447 0.97906 0.97107 1.21236 0.94299 0.89255 0.90688 0.94476 1.22593 0.94566 0.99364 0.98340 1.22887 0.99257 0.96131 0.99376 1.21231 0.84650 0.91617 0.97725 1.44878 1.03354 1.28069 1.58085 1.19341 0.91800 0.95774 1.28630 0.90480 1.25655 0.96497 1.00578 1.03457 1.70159 1.05498 1.31775 1.52556 0.85129 0.78282 0.79358 0.77352 1.19010 1.22002 1.22323 1.45790 1.30408 1.10004 1.19475 1.22433 1.05488 0.80795 0.96940 1.73086 1.20134 0.93135 1.26540 0.93428 0.93748 0.90383 0.89758 0.87542 0.78879 0.74187 0.92314 0.92678 0.89749 0.88964 0.93941 0.94374 0.88352 0.91051 0.90220 0.91804 0.99260 0.95049 0.94603 0.89230 0.88190 0.87173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.87 71.98 0.71 -0.86 16 2 C -0.04 -0.37 6.51 29.85 0.19 -0.18 16 3 C 0.02 0.29 6.49 43.05 0.28 0.57 16 4 C -0.17 -2.73 10.42 22.66 0.24 -2.49 16 5 C -0.06 -1.20 6.96 40.79 0.28 -0.92 16 6 C 0.59 13.98 7.79 86.58 0.67 14.65 16 7 O -0.58 -17.77 14.71 -4.13 -0.06 -17.83 16 8 N -0.69 -12.94 5.54 -466.61 -2.58 -15.52 16 9 C 0.13 2.90 5.68 86.38 0.49 3.39 16 10 C -0.11 -2.30 5.10 30.60 0.16 -2.14 16 11 C -0.11 -3.70 4.71 30.59 0.14 -3.56 16 12 C 0.15 5.57 3.16 45.34 0.14 5.71 16 13 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 14 C -0.11 -3.25 5.70 31.79 0.18 -3.06 16 15 C -0.14 -4.81 7.09 31.99 0.23 -4.59 16 16 C 0.17 8.48 5.43 86.86 0.47 8.95 16 17 N -0.62 -30.88 3.13 -668.25 -2.09 -32.97 16 18 C -0.23 -12.51 9.72 84.03 0.82 -11.69 16 19 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 20 C -0.07 -3.96 5.47 84.86 0.46 -3.50 16 21 N -0.95 -57.88 10.52 21.65 0.23 -57.66 16 22 Si 0.97 46.42 29.55 68.60 2.03 48.45 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 24 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 25 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 26 N -0.27 -5.88 3.75 -356.01 -1.33 -7.21 16 27 C 0.08 1.44 10.84 127.77 1.38 2.83 16 28 N -0.29 -6.36 11.87 -47.50 -0.56 -6.92 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.11 0.61 8.12 -2.39 -0.02 0.59 16 34 H 0.19 1.50 7.62 -2.91 -0.02 1.48 16 35 H 0.42 4.84 7.55 -92.71 -0.70 4.14 16 36 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.09 1.56 7.64 -2.39 -0.02 1.54 16 40 H 0.04 1.52 8.02 -2.38 -0.02 1.51 16 41 H 0.04 1.44 7.84 -2.39 -0.02 1.42 16 42 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.07 1.98 7.77 -2.39 -0.02 1.96 16 44 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 46 H -0.01 -0.58 8.09 -2.39 -0.02 -0.60 16 47 H 0.03 1.75 6.83 -2.39 -0.02 1.74 16 48 H 0.24 14.53 8.31 -92.71 -0.77 13.76 16 49 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.10 1.97 6.29 -2.39 -0.02 1.96 16 51 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -76.10 409.10 2.69 -73.41 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.21 Total: 13.15 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 6.86 Total: 3.11 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -6.34 Total: -120.29 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.06 Total: -17.83 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -76.10 2.69 -73.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753037043.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.782 kcal (2) G-P(sol) polarization free energy of solvation -76.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds