Wall clock time and date at job start Tue Mar 31 2020 20:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 C 1.50697 * 109.47068 * 119.99796 * 2 1 3 5 5 N 1.30496 * 125.65170 * 300.04263 * 4 2 1 6 6 C 1.34136 * 109.25420 * 179.97438 * 5 4 2 7 7 C 1.34673 * 108.02155 * 359.72927 * 6 5 4 8 8 N 1.35045 * 125.64489 * 120.00046 * 4 2 1 9 9 C 1.46501 * 126.40014 * 0.03463 * 8 4 2 10 10 C 1.50700 * 109.46827 * 85.00363 * 9 8 4 11 11 O 1.21280 * 120.00058 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99856 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00083 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47062 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46967 * 180.02562 * 14 13 12 16 16 H 1.08999 * 110.78170 * 308.24051 * 15 14 13 17 17 C 1.55158 * 110.72145 * 184.99928 * 15 14 13 18 18 C 1.54909 * 101.61642 * 206.15534 * 17 15 14 19 19 N 1.47423 * 104.83351 * 36.99324 * 18 17 15 20 20 C 1.36936 * 125.64594 * 155.90840 * 19 18 17 21 21 H 1.08007 * 120.00033 * 179.97438 * 20 19 18 22 22 C 1.38813 * 120.00281 * 359.97114 * 20 19 18 23 23 N 1.31616 * 120.00050 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99983 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47406 * 59.99989 * 24 22 20 26 26 H 1.48499 * 109.47231 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47250 * 299.99992 * 24 22 20 28 28 C 1.47016 * 108.70440 * 335.86643 * 19 18 17 29 29 H 1.08998 * 109.47226 * 300.00303 * 1 2 3 30 30 H 1.09006 * 109.47365 * 59.99710 * 1 2 3 31 31 H 1.08992 * 109.47253 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46943 * 240.00137 * 2 1 3 33 33 H 1.08994 * 109.47217 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47204 * 300.00388 * 3 2 1 35 35 H 1.08998 * 109.47284 * 59.99732 * 3 2 1 36 36 H 1.07991 * 125.98651 * 179.97438 * 6 5 4 37 37 H 1.07996 * 126.59182 * 180.28384 * 7 6 5 38 38 H 1.08998 * 109.46992 * 325.00052 * 9 8 4 39 39 H 1.09005 * 109.47036 * 204.99792 * 9 8 4 40 40 H 0.97002 * 120.00212 * 359.97438 * 12 10 9 41 41 H 1.09007 * 109.46821 * 60.00505 * 13 12 10 42 42 H 1.08996 * 109.47722 * 300.00172 * 13 12 10 43 43 H 1.08996 * 109.47404 * 60.00468 * 14 13 12 44 44 H 1.09005 * 109.47092 * 300.00001 * 14 13 12 45 45 H 1.09002 * 111.00366 * 88.06052 * 17 15 14 46 46 H 1.09002 * 111.00429 * 324.25114 * 17 15 14 47 47 H 1.09000 * 110.36449 * 155.82966 * 18 17 15 48 48 H 1.09002 * 110.36579 * 278.03887 * 18 17 15 49 49 H 0.96996 * 120.00056 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.88531 * 120.47268 * 28 19 18 51 51 H 1.08996 * 109.88671 * 241.49081 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7853 -0.3624 2.4637 6 6 2.3925 -1.2216 3.2958 7 6 3.0354 -2.1402 2.5498 8 7 2.8120 -1.8130 1.2395 9 6 3.3190 -2.5288 0.0661 10 6 4.5914 -1.8761 -0.4094 11 8 5.0310 -0.9080 0.1741 12 7 5.2401 -2.3675 -1.4836 13 6 6.4767 -1.7327 -1.9463 14 6 7.0056 -2.4796 -3.1724 15 6 8.2974 -1.8169 -3.6552 16 1 8.1555 -0.7445 -3.7885 17 6 8.7923 -2.4729 -4.9713 18 6 10.3150 -2.1965 -4.9043 19 7 10.6619 -2.3381 -3.4784 20 6 11.9024 -2.6433 -2.9855 21 1 12.0549 -2.7244 -1.9193 22 6 12.9640 -2.8487 -3.8559 23 7 12.7784 -2.7495 -5.1552 24 14 14.6561 -3.2658 -3.1834 25 1 14.5818 -4.5278 -2.4042 26 1 15.6088 -3.4344 -4.3099 27 1 15.1230 -2.1662 -2.3013 28 6 9.4557 -2.0964 -2.6735 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 2.3667 -1.1855 4.3748 37 1 3.6173 -2.9734 2.9151 38 1 2.5745 -2.4960 -0.7292 39 1 3.5206 -3.5664 0.3326 40 1 4.8883 -3.1416 -1.9505 41 1 7.2215 -1.7656 -1.1511 42 1 6.2750 -0.6951 -2.2124 43 1 6.2607 -2.4463 -3.9675 44 1 7.2073 -3.5173 -2.9067 45 1 8.3454 -1.9903 -5.8405 46 1 8.5893 -3.5439 -4.9744 47 1 10.8599 -2.9275 -5.5017 48 1 10.5328 -1.1863 -5.2509 49 1 13.5201 -2.8934 -5.7634 50 1 9.2276 -2.9774 -2.0735 51 1 9.6101 -1.2352 -2.0235 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753337565.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:32 Heat of formation + Delta-G solvation = 38.428030 kcal Electronic energy + Delta-G solvation = -28509.514398 eV Core-core repulsion = 24638.278785 eV Total energy + Delta-G solvation = -3871.235613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.42662 -39.87559 -37.88417 -35.62073 -35.44510 -34.27526 -33.11884 -31.03730 -29.30584 -29.00677 -28.16111 -27.40030 -26.36619 -24.68205 -23.13764 -22.47489 -21.63810 -21.10754 -20.14399 -19.58101 -19.23897 -17.75672 -17.60636 -16.90863 -16.17994 -15.79748 -15.47703 -15.14421 -14.98586 -14.63429 -14.53520 -14.06003 -13.92204 -13.77401 -13.67520 -13.55643 -13.12434 -12.80166 -12.59033 -12.38678 -12.34750 -11.97885 -11.77587 -11.76768 -11.62590 -11.45597 -11.24808 -11.14909 -10.94505 -10.77501 -10.63935 -10.20784 -10.13247 -10.09011 -9.99707 -9.80060 -9.67735 -9.48351 -9.33745 -8.65554 -8.52354 -6.83675 -5.66095 -3.07630 1.72748 2.18046 2.31750 2.93692 3.02095 3.39573 3.43774 3.45081 4.07313 4.17384 4.24204 4.36826 4.48254 4.48629 4.76534 4.83076 4.85102 4.96956 4.99617 5.20586 5.26654 5.38870 5.42763 5.45419 5.51743 5.55540 5.56864 5.61694 5.68726 5.69940 5.80540 5.92674 5.94395 6.03410 6.05995 6.11006 6.14216 6.22595 6.34151 6.56966 6.57739 6.59291 6.73053 6.87872 6.93487 7.12988 7.50944 7.61946 7.81720 7.84670 7.93791 8.35873 9.21808 9.82827 10.47968 11.37789 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.001920 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.803203 B =14579.240541 C =15247.927749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.007 4.007 3 C -0.140 4.140 4 C 0.227 3.773 5 N -0.486 5.486 6 C -0.027 4.027 7 C -0.052 4.052 8 N -0.443 5.443 9 C 0.083 3.917 10 C 0.491 3.509 11 O -0.516 6.516 12 N -0.724 5.724 13 C 0.118 3.882 14 C -0.116 4.116 15 C -0.098 4.098 16 H 0.072 0.928 17 C -0.138 4.138 18 C 0.151 3.849 19 N -0.605 5.605 20 C -0.223 4.223 21 H 0.076 0.924 22 C -0.012 4.012 23 N -0.923 5.923 24 Si 0.915 3.085 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.140 3.860 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.169 0.831 37 H 0.173 0.827 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.401 0.599 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.106 0.894 48 H 0.011 0.989 49 H 0.252 0.748 50 H 0.021 0.979 51 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.151 -0.958 6.771 27.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 C -0.198 4.198 4 C -0.035 4.035 5 N -0.204 5.204 6 C -0.174 4.174 7 C -0.184 4.184 8 N -0.125 5.125 9 C -0.044 4.044 10 C 0.274 3.726 11 O -0.390 6.390 12 N -0.376 5.376 13 C -0.005 4.005 14 C -0.154 4.154 15 C -0.117 4.117 16 H 0.091 0.909 17 C -0.177 4.177 18 C 0.026 3.974 19 N -0.331 5.331 20 C -0.351 4.351 21 H 0.094 0.906 22 C -0.208 4.208 23 N -0.572 5.572 24 Si 0.745 3.255 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.014 3.986 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.186 0.814 37 H 0.190 0.810 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.235 0.765 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.123 0.877 48 H 0.029 0.971 49 H 0.063 0.937 50 H 0.039 0.961 51 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -26.000 0.308 7.283 27.002 hybrid contribution 1.480 -1.402 -0.030 2.039 sum -24.520 -1.094 7.252 25.594 Atomic orbital electron populations 1.21792 0.93050 1.02011 1.02879 1.19530 0.96421 0.96185 0.90600 1.21765 1.01768 0.93779 1.02478 1.23166 0.96366 0.88265 0.95705 1.70176 1.24501 1.26801 0.98922 1.22233 1.01403 0.94201 0.99544 1.22642 1.08161 1.05064 0.82515 1.44832 1.38602 1.23272 1.05822 1.21680 0.95889 0.97683 0.89161 1.20678 0.85841 0.85005 0.81086 1.90817 1.66813 1.26029 1.55365 1.46016 1.26942 1.33986 1.30673 1.21560 0.84606 0.97037 0.97259 1.21794 0.97706 0.99999 0.95871 1.22103 0.92990 0.99391 0.97254 0.90925 1.23041 1.00239 0.99431 0.94987 1.21923 0.88615 1.00128 0.86744 1.44508 1.04724 1.82225 1.01659 1.19041 0.84428 1.39725 0.91900 0.90617 1.24791 0.98208 1.02303 0.95474 1.69787 1.30237 1.56397 1.00784 0.86148 0.83612 0.78260 0.77463 1.21177 1.21552 1.21204 1.21369 0.87011 0.97082 0.93150 0.91235 0.91802 0.92867 0.90707 0.92141 0.91977 0.91405 0.81356 0.81022 0.86193 0.85871 0.76491 0.90836 0.91305 0.91528 0.91100 0.92470 0.92207 0.87675 0.97129 0.93705 0.96098 0.96325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.18 37.16 0.34 -0.66 16 2 C -0.01 -0.06 3.25 -91.77 -0.30 -0.36 16 3 C -0.14 -1.34 9.18 37.16 0.34 -1.00 16 4 C 0.23 2.57 6.40 -155.42 -0.99 1.58 16 5 N -0.49 -6.32 11.25 -10.82 -0.12 -6.44 16 6 C -0.03 -0.30 11.87 -17.81 -0.21 -0.51 16 7 C -0.05 -0.52 11.58 -16.56 -0.19 -0.71 16 8 N -0.44 -4.40 2.24 -115.19 -0.26 -4.65 16 9 C 0.08 0.54 6.17 -5.19 -0.03 0.51 16 10 C 0.49 4.94 7.90 -10.99 -0.09 4.85 16 11 O -0.52 -7.90 16.42 5.56 0.09 -7.81 16 12 N -0.72 -6.07 5.56 -60.29 -0.33 -6.40 16 13 C 0.12 1.34 5.56 -4.04 -0.02 1.32 16 14 C -0.12 -1.32 4.73 -26.73 -0.13 -1.45 16 15 C -0.10 -1.57 2.93 -88.75 -0.26 -1.83 16 16 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 17 C -0.14 -2.47 6.53 -24.58 -0.16 -2.63 16 18 C 0.15 3.62 5.89 -2.53 -0.01 3.61 16 19 N -0.61 -15.55 3.39 -170.04 -0.58 -16.12 16 20 C -0.22 -6.26 10.27 -15.06 -0.15 -6.41 16 21 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 22 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 23 N -0.92 -26.94 10.09 55.49 0.56 -26.38 16 24 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 C 0.14 2.87 6.24 -3.04 -0.02 2.85 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.55 6.85 -51.93 -0.36 0.20 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.17 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.12 0.44 7.28 -51.93 -0.38 0.06 16 39 H 0.12 0.44 8.13 -51.93 -0.42 0.02 16 40 H 0.40 1.98 8.47 -40.82 -0.35 1.63 16 41 H 0.07 1.00 7.69 -51.93 -0.40 0.61 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.82 7.93 -51.93 -0.41 0.41 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.06 1.04 8.05 -51.93 -0.42 0.62 16 47 H 0.11 2.84 5.88 -51.93 -0.31 2.54 16 48 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 50 H 0.02 0.42 7.68 -51.93 -0.40 0.03 16 51 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 410.90 15.07 6.19 6.19 Total: -1.00 -36.21 410.90 -10.36 -46.57 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -8.90 Total: -0.80 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -1.99 Total: -1.29 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -0.73 Total: -60.01 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.09 Total: -7.81 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.21 -10.36 -46.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753337565.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.999 kcal (2) G-P(sol) polarization free energy of solvation -36.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds