Wall clock time and date at job start Tue Mar 31 2020 20:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 C 1.50697 * 109.47068 * 119.99796 * 2 1 3 5 5 N 1.30496 * 125.65170 * 300.04263 * 4 2 1 6 6 C 1.34136 * 109.25420 * 179.97438 * 5 4 2 7 7 C 1.34673 * 108.02155 * 359.72927 * 6 5 4 8 8 N 1.35045 * 125.64489 * 120.00046 * 4 2 1 9 9 C 1.46501 * 126.40014 * 0.03463 * 8 4 2 10 10 C 1.50700 * 109.46827 * 85.00363 * 9 8 4 11 11 O 1.21280 * 120.00058 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99856 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00083 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47062 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46967 * 180.02562 * 14 13 12 16 16 H 1.08999 * 110.78170 * 308.24051 * 15 14 13 17 17 C 1.55158 * 110.72145 * 184.99928 * 15 14 13 18 18 C 1.54909 * 101.61642 * 206.15534 * 17 15 14 19 19 N 1.47423 * 104.83351 * 36.99324 * 18 17 15 20 20 C 1.36936 * 125.64594 * 155.90840 * 19 18 17 21 21 H 1.08007 * 120.00033 * 179.97438 * 20 19 18 22 22 C 1.38813 * 120.00281 * 359.97114 * 20 19 18 23 23 N 1.31616 * 120.00050 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99983 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47406 * 59.99989 * 24 22 20 26 26 H 1.48499 * 109.47231 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47250 * 299.99992 * 24 22 20 28 28 C 1.47016 * 108.70440 * 335.86643 * 19 18 17 29 29 H 1.08998 * 109.47226 * 300.00303 * 1 2 3 30 30 H 1.09006 * 109.47365 * 59.99710 * 1 2 3 31 31 H 1.08992 * 109.47253 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46943 * 240.00137 * 2 1 3 33 33 H 1.08994 * 109.47217 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47204 * 300.00388 * 3 2 1 35 35 H 1.08998 * 109.47284 * 59.99732 * 3 2 1 36 36 H 1.07991 * 125.98651 * 179.97438 * 6 5 4 37 37 H 1.07996 * 126.59182 * 180.28384 * 7 6 5 38 38 H 1.08998 * 109.46992 * 325.00052 * 9 8 4 39 39 H 1.09005 * 109.47036 * 204.99792 * 9 8 4 40 40 H 0.97002 * 120.00212 * 359.97438 * 12 10 9 41 41 H 1.09007 * 109.46821 * 60.00505 * 13 12 10 42 42 H 1.08996 * 109.47722 * 300.00172 * 13 12 10 43 43 H 1.08996 * 109.47404 * 60.00468 * 14 13 12 44 44 H 1.09005 * 109.47092 * 300.00001 * 14 13 12 45 45 H 1.09002 * 111.00366 * 88.06052 * 17 15 14 46 46 H 1.09002 * 111.00429 * 324.25114 * 17 15 14 47 47 H 1.09000 * 110.36449 * 155.82966 * 18 17 15 48 48 H 1.09002 * 110.36579 * 278.03887 * 18 17 15 49 49 H 0.96996 * 120.00056 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.88531 * 120.47268 * 28 19 18 51 51 H 1.08996 * 109.88671 * 241.49081 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7853 -0.3624 2.4637 6 6 2.3925 -1.2216 3.2958 7 6 3.0354 -2.1402 2.5498 8 7 2.8120 -1.8130 1.2395 9 6 3.3190 -2.5288 0.0661 10 6 4.5914 -1.8761 -0.4094 11 8 5.0310 -0.9080 0.1741 12 7 5.2401 -2.3675 -1.4836 13 6 6.4767 -1.7327 -1.9463 14 6 7.0056 -2.4796 -3.1724 15 6 8.2974 -1.8169 -3.6552 16 1 8.1555 -0.7445 -3.7885 17 6 8.7923 -2.4729 -4.9713 18 6 10.3150 -2.1965 -4.9043 19 7 10.6619 -2.3381 -3.4784 20 6 11.9024 -2.6433 -2.9855 21 1 12.0549 -2.7244 -1.9193 22 6 12.9640 -2.8487 -3.8559 23 7 12.7784 -2.7495 -5.1552 24 14 14.6561 -3.2658 -3.1834 25 1 14.5818 -4.5278 -2.4042 26 1 15.6088 -3.4344 -4.3099 27 1 15.1230 -2.1662 -2.3013 28 6 9.4557 -2.0964 -2.6735 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 2.3667 -1.1855 4.3748 37 1 3.6173 -2.9734 2.9151 38 1 2.5745 -2.4960 -0.7292 39 1 3.5206 -3.5664 0.3326 40 1 4.8883 -3.1416 -1.9505 41 1 7.2215 -1.7656 -1.1511 42 1 6.2750 -0.6951 -2.2124 43 1 6.2607 -2.4463 -3.9675 44 1 7.2073 -3.5173 -2.9067 45 1 8.3454 -1.9903 -5.8405 46 1 8.5893 -3.5439 -4.9744 47 1 10.8599 -2.9275 -5.5017 48 1 10.5328 -1.1863 -5.2509 49 1 13.5201 -2.8934 -5.7634 50 1 9.2276 -2.9774 -2.0735 51 1 9.6101 -1.2352 -2.0235 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753337565.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:30 Heat of formation + Delta-G solvation = 14.900810 kcal Electronic energy + Delta-G solvation = -28510.534615 eV Core-core repulsion = 24638.278785 eV Total energy + Delta-G solvation = -3872.255830 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.15172 -40.71551 -39.40775 -36.54751 -36.27868 -35.01638 -34.76510 -32.56855 -30.83289 -29.85849 -29.13484 -28.04856 -27.75774 -26.39141 -23.92012 -23.60947 -22.44469 -21.99314 -21.80438 -20.83200 -20.05419 -18.91200 -18.51241 -18.27259 -17.14266 -16.77249 -16.71210 -16.39858 -15.91831 -15.83383 -15.55118 -15.22734 -15.05047 -14.65022 -14.55079 -14.30820 -14.26540 -13.84672 -13.80614 -13.55321 -13.38124 -13.32969 -13.06635 -13.01393 -12.83146 -12.67679 -12.40685 -12.25333 -12.13125 -12.04750 -11.90098 -11.79701 -11.64860 -11.44234 -11.38316 -11.22205 -10.92248 -10.75218 -10.45669 -10.17203 -9.27750 -8.89216 -7.79098 -5.23481 0.98700 1.43951 1.45463 1.47173 1.53678 1.69269 2.19796 2.25460 2.47959 3.29498 3.41273 3.59805 3.71800 3.74189 3.75766 3.80863 3.93426 4.07904 4.13140 4.17431 4.20053 4.31404 4.34082 4.35975 4.59542 4.62855 4.70564 4.73262 4.73828 4.79080 4.88446 4.89610 4.95563 5.02162 5.05444 5.11154 5.18068 5.26022 5.26896 5.32558 5.37525 5.42106 5.42476 5.51065 5.68873 5.82936 5.85639 6.17933 6.31447 6.48914 7.10303 7.14954 7.17666 7.78506 8.41926 9.22220 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.001920 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.803203 B =14579.240541 C =15247.927749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.008 4.008 3 C -0.135 4.135 4 C 0.213 3.787 5 N -0.524 5.524 6 C -0.058 4.058 7 C -0.051 4.051 8 N -0.446 5.446 9 C 0.084 3.916 10 C 0.490 3.510 11 O -0.576 6.576 12 N -0.705 5.705 13 C 0.125 3.875 14 C -0.098 4.098 15 C -0.085 4.085 16 H 0.076 0.924 17 C -0.120 4.120 18 C 0.147 3.853 19 N -0.630 5.630 20 C -0.243 4.243 21 H 0.076 0.924 22 C -0.068 4.068 23 N -0.948 5.948 24 Si 0.980 3.020 25 H -0.275 1.275 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.134 3.866 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.031 0.969 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.180 0.820 37 H 0.200 0.800 38 H 0.157 0.843 39 H 0.161 0.839 40 H 0.423 0.577 41 H 0.044 0.956 42 H 0.060 0.940 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.070 0.930 47 H 0.071 0.929 48 H -0.019 1.019 49 H 0.248 0.752 50 H 0.027 0.973 51 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.313 -2.821 6.015 29.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.029 4.029 3 C -0.193 4.193 4 C -0.050 4.050 5 N -0.243 5.243 6 C -0.204 4.204 7 C -0.183 4.183 8 N -0.128 5.128 9 C -0.041 4.041 10 C 0.276 3.724 11 O -0.455 6.455 12 N -0.359 5.359 13 C 0.001 3.999 14 C -0.136 4.136 15 C -0.104 4.104 16 H 0.094 0.906 17 C -0.159 4.159 18 C 0.023 3.977 19 N -0.356 5.356 20 C -0.372 4.372 21 H 0.093 0.907 22 C -0.261 4.261 23 N -0.598 5.598 24 Si 0.808 3.192 25 H -0.201 1.201 26 H -0.217 1.217 27 H -0.208 1.208 28 C 0.009 3.991 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.050 0.950 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.197 0.803 37 H 0.217 0.783 38 H 0.175 0.825 39 H 0.179 0.821 40 H 0.261 0.739 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.121 0.879 44 H 0.096 0.904 45 H 0.105 0.895 46 H 0.089 0.911 47 H 0.089 0.911 48 H -0.001 1.001 49 H 0.057 0.943 50 H 0.045 0.955 51 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -28.205 -1.599 6.513 28.991 hybrid contribution 2.191 -0.783 0.236 2.338 sum -26.014 -2.382 6.749 26.980 Atomic orbital electron populations 1.21733 0.91737 1.02562 1.02952 1.19673 0.97446 0.95296 0.90444 1.21708 0.99808 0.94945 1.02825 1.23604 0.96586 0.88850 0.95912 1.70116 1.25956 1.28055 1.00212 1.22627 1.02429 0.94897 1.00451 1.23109 1.07333 1.05189 0.82654 1.45037 1.38030 1.23076 1.06690 1.22030 0.94610 0.98432 0.89071 1.21315 0.86531 0.84112 0.80475 1.90812 1.68579 1.28834 1.57262 1.45767 1.25619 1.34208 1.30296 1.21260 0.85231 0.97004 0.96373 1.21628 0.95844 0.99458 0.96689 1.22024 0.93436 1.00060 0.94900 0.90599 1.22873 0.95304 1.00617 0.97093 1.21776 0.92949 0.97360 0.85662 1.44865 1.05480 1.82141 1.03081 1.19405 0.86073 1.39549 0.92147 0.90653 1.25641 1.01822 1.02724 0.95864 1.70050 1.30765 1.57220 1.01718 0.85133 0.79062 0.78254 0.76768 1.20082 1.21667 1.20788 1.21588 0.87067 0.96653 0.93842 0.93082 0.89761 0.92056 0.88679 0.94961 0.89691 0.92975 0.80297 0.78342 0.82533 0.82122 0.73917 0.93731 0.92192 0.87942 0.90418 0.89535 0.91130 0.91064 1.00107 0.94281 0.95497 0.97551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.18 71.98 0.66 -0.99 16 2 C -0.01 -0.14 3.25 -11.54 -0.04 -0.17 16 3 C -0.13 -2.55 9.18 71.98 0.66 -1.89 16 4 C 0.21 4.65 6.40 138.13 0.88 5.53 16 5 N -0.52 -13.87 11.25 -188.13 -2.12 -15.98 16 6 C -0.06 -1.31 11.87 83.52 0.99 -0.32 16 7 C -0.05 -0.94 11.58 83.09 0.96 0.02 16 8 N -0.45 -7.95 2.24 -518.34 -1.16 -9.12 16 9 C 0.08 0.77 6.17 85.63 0.53 1.29 16 10 C 0.49 8.61 7.90 87.66 0.69 9.30 16 11 O -0.58 -17.36 16.42 -3.03 -0.05 -17.41 16 12 N -0.71 -9.33 5.56 -463.06 -2.57 -11.91 16 13 C 0.13 2.56 5.56 86.38 0.48 3.04 16 14 C -0.10 -1.87 4.73 30.60 0.14 -1.73 16 15 C -0.08 -2.53 2.93 -9.58 -0.03 -2.56 16 16 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 17 C -0.12 -4.04 6.53 31.99 0.21 -3.83 16 18 C 0.15 7.22 5.89 86.86 0.51 7.73 16 19 N -0.63 -32.93 3.39 -691.88 -2.35 -35.27 16 20 C -0.24 -13.93 10.27 84.03 0.86 -13.07 16 21 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 22 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 23 N -0.95 -56.90 10.09 21.65 0.22 -56.68 16 24 Si 0.98 46.19 29.55 68.60 2.03 48.22 16 25 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 26 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 27 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 28 C 0.13 5.45 6.24 86.75 0.54 5.99 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.69 8.14 -2.38 -0.02 0.68 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 1.11 6.85 -2.39 -0.02 1.09 16 33 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.18 3.25 8.06 -2.92 -0.02 3.23 16 37 H 0.20 2.33 8.06 -2.91 -0.02 2.31 16 38 H 0.16 0.30 7.28 -2.39 -0.02 0.29 16 39 H 0.16 0.30 8.13 -2.38 -0.02 0.28 16 40 H 0.42 1.99 8.47 -92.71 -0.79 1.21 16 41 H 0.04 1.18 7.69 -2.38 -0.02 1.17 16 42 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.08 1.45 7.93 -2.38 -0.02 1.43 16 45 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.07 2.24 8.05 -2.39 -0.02 2.22 16 47 H 0.07 3.98 5.88 -2.39 -0.01 3.96 16 48 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 49 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 50 H 0.03 1.07 7.68 -2.39 -0.02 1.05 16 51 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 Total: -1.00 -85.14 410.90 2.64 -82.49 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.12 Total: 10.76 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 8.53 Total: 4.90 kcal Atomic # 7 Polarization: -120.98 SS G_CDS: -7.98 Total: -128.96 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.05 Total: -17.41 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -85.14 2.64 -82.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753337565.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.395 kcal (2) G-P(sol) polarization free energy of solvation -85.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds