Wall clock time and date at job start Tue Mar 31 2020 18:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.46807 * 2 1 4 4 N 1.33325 * 126.10803 * 89.97785 * 3 2 1 5 5 C 1.30850 * 109.68636 * 179.97438 * 4 3 2 6 6 N 1.34496 * 109.16428 * 0.26228 * 5 4 3 7 7 H 0.97006 * 126.47435 * 179.72885 * 6 5 4 8 8 C 1.36664 * 126.10778 * 269.97098 * 3 2 1 9 9 C 1.46766 * 126.84225 * 0.03023 * 8 3 2 10 10 O 1.21679 * 120.00188 * 359.97438 * 9 8 3 11 11 N 1.34775 * 119.99811 * 179.97438 * 9 8 3 12 12 C 1.46496 * 120.00139 * 175.44523 * 11 9 8 13 13 C 1.53008 * 109.46535 * 61.91093 * 12 11 9 14 14 N 1.46500 * 109.46953 * 56.22693 * 13 12 11 15 15 C 1.36942 * 119.99698 * 175.02222 * 14 13 12 16 16 H 1.07995 * 120.00117 * 359.97438 * 15 14 13 17 17 C 1.38806 * 119.99586 * 180.02562 * 15 14 13 18 18 N 1.31621 * 120.00625 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99694 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47496 * 89.99731 * 19 17 15 21 21 H 1.48498 * 109.46938 * 209.99677 * 19 17 15 22 22 H 1.48503 * 109.46979 * 329.99014 * 19 17 15 23 23 C 1.53003 * 109.47435 * 181.90946 * 12 11 9 24 24 C 1.53001 * 109.46909 * 60.00556 * 23 12 11 25 25 C 1.52999 * 109.47132 * 59.99721 * 24 23 12 26 26 C 1.52998 * 109.47345 * 300.00261 * 25 24 23 27 27 C 1.52994 * 109.47521 * 301.91595 * 12 11 9 28 28 H 1.09002 * 109.47536 * 59.99601 * 27 12 11 29 29 C 1.52997 * 109.47531 * 179.97438 * 27 12 11 30 30 H 1.08999 * 109.47171 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47168 * 300.00196 * 1 2 3 32 32 H 1.08995 * 109.47014 * 60.00022 * 1 2 3 33 33 H 1.08995 * 109.47057 * 239.99954 * 2 1 3 34 34 H 1.09004 * 109.47129 * 119.99895 * 2 1 3 35 35 H 1.08003 * 125.42061 * 180.02562 * 5 4 3 36 36 H 0.97000 * 119.99787 * 355.45347 * 11 9 8 37 37 H 1.09004 * 109.46633 * 176.22219 * 13 12 11 38 38 H 1.08995 * 109.47374 * 296.21759 * 13 12 11 39 39 H 0.96999 * 120.00050 * 355.01736 * 14 13 12 40 40 H 0.96991 * 120.00268 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.47232 * 180.02562 * 23 12 11 42 42 H 1.09004 * 109.46801 * 300.00177 * 23 12 11 43 43 H 1.08993 * 109.46783 * 180.02562 * 24 23 12 44 44 H 1.09004 * 109.46525 * 300.00062 * 24 23 12 45 45 H 1.08998 * 109.46828 * 60.00103 * 25 24 23 46 46 H 1.09003 * 109.47058 * 180.02562 * 25 24 23 47 47 H 1.09005 * 109.47143 * 180.02562 * 26 25 24 48 48 H 1.08998 * 109.47028 * 299.99720 * 26 25 24 49 49 H 1.09002 * 109.47305 * 59.99736 * 29 27 12 50 50 H 1.09000 * 109.47759 * 179.97438 * 29 27 12 51 51 H 1.09003 * 109.46861 * 299.99794 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2937 2.1618 1.0771 5 6 2.7127 3.3449 0.7072 6 7 2.7295 3.4072 -0.6362 7 1 2.9943 4.1693 -1.1749 8 6 2.3012 2.1800 -1.1041 9 6 2.1579 1.7742 -2.5073 10 8 1.7627 0.6562 -2.7800 11 7 2.4640 2.6401 -3.4937 12 6 2.4169 2.2043 -4.8916 13 6 0.9890 1.7852 -5.2472 14 7 0.0721 2.8947 -4.9740 15 6 -1.2509 2.7885 -5.3113 16 1 -1.6182 1.8870 -5.7791 17 6 -2.1195 3.8399 -5.0530 18 7 -1.6718 4.9387 -4.4833 19 14 -3.9243 3.6947 -5.5124 20 1 -4.6805 3.1166 -4.3726 21 1 -4.4634 5.0409 -5.8322 22 1 -4.0638 2.8114 -6.6980 23 6 2.8515 3.3563 -5.7999 24 6 4.2794 3.7753 -5.4443 25 6 5.2233 2.5873 -5.6402 26 6 4.7887 1.4353 -4.7320 27 6 3.3608 1.0163 -5.0876 28 1 3.0512 0.1955 -4.4406 29 6 3.3111 0.5608 -6.5474 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.9960 4.1455 1.3745 36 1 2.7156 3.5517 -3.2781 37 1 0.9395 1.5249 -6.3046 38 1 0.7035 0.9215 -4.6467 39 1 0.4021 3.7044 -4.5541 40 1 -2.2788 5.6732 -4.3024 41 1 2.8160 3.0322 -6.8400 42 1 2.1789 4.2026 -5.6603 43 1 4.5888 4.5963 -6.0910 44 1 4.3144 4.0995 -4.4041 45 1 5.1882 2.2631 -6.6803 46 1 6.2405 2.8857 -5.3864 47 1 5.4615 0.5891 -4.8713 48 1 4.8238 1.7595 -3.6919 49 1 3.6205 1.3813 -7.1948 50 1 3.9839 -0.2853 -6.6872 51 1 2.2938 0.2621 -6.8004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753536406.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:39 Heat of formation + Delta-G solvation = 14.906585 kcal Electronic energy + Delta-G solvation = -31505.148724 eV Core-core repulsion = 27632.893145 eV Total energy + Delta-G solvation = -3872.255579 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.14505 -40.49141 -37.80828 -34.80390 -34.21171 -33.18018 -32.21981 -31.81518 -31.10219 -29.57202 -28.78365 -26.49567 -25.07638 -23.93504 -22.99071 -22.62598 -22.02117 -21.43365 -20.37840 -19.47738 -18.62958 -18.04932 -17.13918 -16.23611 -15.65943 -15.44571 -15.37276 -14.74133 -14.53549 -14.23340 -14.13498 -13.80528 -13.69333 -13.49306 -13.25835 -13.20046 -12.98034 -12.71257 -12.39595 -12.22547 -12.11194 -12.00280 -11.50953 -11.44489 -11.20393 -11.16459 -10.95571 -10.83386 -10.76903 -10.69461 -10.31681 -10.25832 -10.13080 -10.05143 -9.93969 -9.81691 -9.65353 -9.28532 -8.76249 -8.61882 -8.30966 -6.82815 -5.74219 -2.99526 1.47828 2.94353 2.97843 3.40071 3.45811 3.51294 3.52005 3.64958 4.48772 4.61417 4.74684 4.83367 4.86670 4.96749 5.12078 5.23622 5.25796 5.28894 5.47205 5.49907 5.61854 5.64457 5.71750 5.73707 5.75060 5.78612 5.78854 5.82769 5.90088 5.97830 6.04011 6.12994 6.17469 6.18277 6.24579 6.28917 6.40760 6.44631 6.50311 6.51629 6.57920 6.61438 6.70669 6.72346 6.93153 7.12291 7.24456 7.74231 7.77492 8.02382 8.45750 8.53707 9.57292 10.15760 10.50931 11.49232 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007683 B = 0.005742 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3643.708523 B = 4874.879269 C = 6971.399201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.044 4.044 3 C 0.093 3.907 4 N -0.500 5.500 5 C 0.210 3.790 6 N -0.553 5.553 7 H 0.421 0.579 8 C -0.078 4.078 9 C 0.601 3.399 10 O -0.512 6.512 11 N -0.708 5.708 12 C 0.185 3.815 13 C 0.140 3.860 14 N -0.725 5.725 15 C -0.227 4.227 16 H 0.068 0.932 17 C -0.016 4.016 18 N -0.938 5.938 19 Si 0.904 3.096 20 H -0.291 1.291 21 H -0.293 1.293 22 H -0.282 1.282 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.120 4.120 26 C -0.108 4.108 27 C -0.100 4.100 28 H 0.092 0.908 29 C -0.148 4.148 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.212 0.788 36 H 0.388 0.612 37 H 0.028 0.972 38 H 0.044 0.956 39 H 0.380 0.620 40 H 0.252 0.748 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.056 0.944 49 H 0.058 0.942 50 H 0.050 0.950 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.658 -2.969 3.882 17.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.083 4.083 3 C -0.041 4.041 4 N -0.219 5.219 5 C -0.074 4.074 6 N -0.158 5.158 7 H 0.259 0.741 8 C -0.194 4.194 9 C 0.388 3.612 10 O -0.388 6.388 11 N -0.359 5.359 12 C 0.100 3.900 13 C 0.012 3.988 14 N -0.369 5.369 15 C -0.359 4.359 16 H 0.086 0.914 17 C -0.212 4.212 18 N -0.588 5.588 19 Si 0.736 3.264 20 H -0.219 1.219 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.160 4.160 24 C -0.155 4.155 25 C -0.157 4.157 26 C -0.146 4.146 27 C -0.119 4.119 28 H 0.110 0.890 29 C -0.205 4.205 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.228 0.772 36 H 0.221 0.779 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.213 0.787 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.074 0.926 49 H 0.077 0.923 50 H 0.069 0.931 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.118 -4.145 4.377 17.208 hybrid contribution -0.650 1.800 -0.896 2.113 sum 15.468 -2.345 3.482 16.027 Atomic orbital electron populations 1.21622 0.94269 1.01572 1.02243 1.20013 0.96343 0.88744 1.03180 1.20997 0.99242 0.97195 0.86638 1.70079 1.18419 1.02811 1.30638 1.25027 1.02312 0.97950 0.82146 1.43320 1.50578 1.13180 1.08736 0.74078 1.21156 1.14911 0.87755 0.95607 1.16643 0.77235 0.85190 0.82178 1.90753 1.45141 1.20481 1.82389 1.45817 1.70105 1.13587 1.06350 1.20562 0.96302 0.93872 0.79307 1.21183 0.86913 0.92949 0.97778 1.42204 1.05437 1.15533 1.73712 1.19229 0.85110 0.99728 1.31804 0.91361 1.24656 0.97936 0.96518 1.02042 1.69634 1.34184 1.05793 1.49154 0.86219 0.85660 0.76535 0.78009 1.21859 1.21941 1.20825 1.21826 0.95718 0.98505 0.99933 1.21543 0.95426 0.97641 1.00926 1.21576 0.98136 0.95647 1.00359 1.21488 0.96209 0.97695 0.99207 1.21431 0.94060 0.98425 0.98005 0.89010 1.21957 1.02225 1.00708 0.95627 0.92451 0.93169 0.91906 0.88861 0.91201 0.77187 0.77857 0.95435 0.93845 0.78681 0.93812 0.90123 0.90208 0.92002 0.92768 0.91623 0.92724 0.92446 0.92568 0.92310 0.93067 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.89 37.16 0.37 -1.79 16 2 C -0.04 -0.67 5.93 -27.88 -0.17 -0.84 16 3 C 0.09 1.49 6.40 -82.51 -0.53 0.96 16 4 N -0.50 -7.47 11.20 -10.64 -0.12 -7.59 16 5 C 0.21 2.37 13.01 -90.58 -1.18 1.19 16 6 N -0.55 -6.35 6.07 -10.79 -0.07 -6.41 16 7 H 0.42 3.50 8.33 -40.82 -0.34 3.16 16 8 C -0.08 -1.20 7.08 -82.14 -0.58 -1.79 16 9 C 0.60 10.12 7.20 -12.82 -0.09 10.03 16 10 O -0.51 -9.86 11.08 5.21 0.06 -9.80 16 11 N -0.71 -10.55 3.44 -48.87 -0.17 -10.72 16 12 C 0.19 2.86 0.09 -131.82 -0.01 2.85 16 13 C 0.14 2.86 4.45 -4.04 -0.02 2.84 16 14 N -0.72 -17.91 5.12 -59.91 -0.31 -18.22 16 15 C -0.23 -6.40 9.99 -15.06 -0.15 -6.55 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 18 N -0.94 -28.01 13.06 55.49 0.72 -27.28 16 19 Si 0.90 22.84 29.55 -169.99 -5.02 17.82 16 20 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 23 C -0.12 -1.71 4.36 -26.73 -0.12 -1.83 16 24 C -0.12 -1.28 5.75 -26.73 -0.15 -1.43 16 25 C -0.12 -1.22 5.65 -26.73 -0.15 -1.37 16 26 C -0.11 -1.25 5.29 -26.73 -0.14 -1.39 16 27 C -0.10 -1.37 2.01 -90.62 -0.18 -1.55 16 28 H 0.09 1.48 6.18 -51.93 -0.32 1.16 16 29 C -0.15 -1.85 8.15 37.16 0.30 -1.55 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.09 1.47 6.48 -51.93 -0.34 1.13 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.21 1.36 8.06 -52.48 -0.42 0.94 16 36 H 0.39 5.01 6.64 -40.82 -0.27 4.74 16 37 H 0.03 0.57 6.64 -51.93 -0.34 0.23 16 38 H 0.04 1.00 6.26 -51.93 -0.33 0.68 16 39 H 0.38 9.64 6.57 -40.82 -0.27 9.37 16 40 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.08 1.13 6.43 -51.93 -0.33 0.79 16 42 H 0.08 1.32 7.21 -51.93 -0.37 0.94 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.55 6.90 -51.93 -0.36 0.19 16 45 H 0.07 0.66 6.43 -51.93 -0.33 0.32 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.68 7.60 -51.93 -0.39 0.29 16 49 H 0.06 0.68 4.81 -51.93 -0.25 0.43 16 50 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.06 0.87 6.52 -51.93 -0.34 0.53 16 LS Contribution 383.94 15.07 5.79 5.79 Total: -1.00 -33.86 383.94 -9.95 -43.81 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -7.94 Total: 15.38 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -2.90 Total: -2.77 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: 0.06 Total: -70.22 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.06 Total: -9.80 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.86 -9.95 -43.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753536406.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.720 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds