Wall clock time and date at job start Tue Mar 31 2020 18:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50706 * 109.47177 * 2 1 4 4 N 1.33324 * 126.10410 * 89.96918 * 3 2 1 5 5 C 1.30862 * 109.68114 * 180.02562 * 4 3 2 6 6 N 1.34496 * 109.16460 * 0.02562 * 5 4 3 7 7 H 0.96996 * 126.47665 * 180.02562 * 6 5 4 8 8 C 1.36658 * 126.10791 * 270.00420 * 3 2 1 9 9 C 1.46767 * 126.84389 * 359.97213 * 8 3 2 10 10 O 1.21682 * 120.00208 * 0.02562 * 9 8 3 11 11 N 1.34776 * 120.00121 * 180.02562 * 9 8 3 12 12 C 1.46501 * 120.00363 * 173.99381 * 11 9 8 13 13 C 1.53004 * 109.46932 * 51.14502 * 12 11 9 14 14 N 1.46502 * 109.47209 * 54.12962 * 13 12 11 15 15 C 1.36933 * 120.00090 * 183.51851 * 14 13 12 16 16 H 1.08001 * 119.99952 * 0.02562 * 15 14 13 17 17 C 1.38813 * 120.00025 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99783 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99895 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47146 * 90.00229 * 19 17 15 21 21 H 1.48507 * 109.47322 * 209.99978 * 19 17 15 22 22 H 1.48498 * 109.47387 * 329.99834 * 19 17 15 23 23 C 1.52995 * 109.47369 * 171.14223 * 12 11 9 24 24 C 1.53004 * 109.46866 * 60.00238 * 23 12 11 25 25 C 1.52993 * 109.47134 * 59.99858 * 24 23 12 26 26 C 1.52995 * 109.47360 * 299.99840 * 25 24 23 27 27 C 1.52993 * 109.47071 * 291.14634 * 12 11 9 28 28 H 1.09001 * 109.47277 * 179.97438 * 27 12 11 29 29 C 1.53004 * 109.47309 * 59.99755 * 27 12 11 30 30 H 1.09007 * 109.47477 * 59.99853 * 1 2 3 31 31 H 1.09000 * 109.47544 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47746 * 299.99954 * 1 2 3 33 33 H 1.08997 * 109.47746 * 240.00046 * 2 1 3 34 34 H 1.09001 * 109.47428 * 119.99445 * 2 1 3 35 35 H 1.07995 * 125.41424 * 179.97438 * 5 4 3 36 36 H 0.97001 * 119.99670 * 353.99085 * 11 9 8 37 37 H 1.08996 * 109.47213 * 174.13468 * 13 12 11 38 38 H 1.09004 * 109.46669 * 294.13332 * 13 12 11 39 39 H 0.97002 * 119.99919 * 3.52695 * 14 13 12 40 40 H 0.97006 * 119.99779 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.47382 * 179.97438 * 23 12 11 42 42 H 1.08998 * 109.47505 * 300.00369 * 23 12 11 43 43 H 1.09002 * 109.46831 * 179.97438 * 24 23 12 44 44 H 1.09001 * 109.47208 * 299.99607 * 24 23 12 45 45 H 1.09002 * 109.47182 * 60.00340 * 25 24 23 46 46 H 1.09003 * 109.47320 * 180.02562 * 25 24 23 47 47 H 1.08998 * 109.47505 * 179.97438 * 26 25 24 48 48 H 1.08996 * 109.47530 * 299.99939 * 26 25 24 49 49 H 1.09003 * 109.47139 * 52.03176 * 29 27 12 50 50 H 1.08998 * 109.47000 * 172.03500 * 29 27 12 51 51 H 1.08994 * 109.47192 * 292.03372 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2936 2.1617 1.0772 5 6 2.7117 3.3453 0.7072 6 7 2.7329 3.4060 -0.6362 7 1 3.0019 4.1665 -1.1749 8 6 2.3007 2.1802 -1.1041 9 6 2.1577 1.7743 -2.5072 10 8 1.7624 0.6563 -2.7800 11 7 2.4641 2.6400 -3.4937 12 6 2.4483 2.1955 -4.8896 13 6 1.1175 1.5023 -5.1890 14 7 0.0112 2.3932 -4.8301 15 6 -1.2823 1.9584 -4.9433 16 1 -1.4870 0.9586 -5.2967 17 6 -2.3305 2.8027 -4.6037 18 7 -2.0810 4.0213 -4.1734 19 14 -4.0951 2.2098 -4.7588 20 1 -4.5189 1.5778 -3.4836 21 1 -4.9807 3.3640 -5.0574 22 1 -4.1888 1.2165 -5.8587 23 6 2.6120 3.4051 -5.8119 24 6 3.9427 4.0983 -5.5126 25 6 5.0930 3.1176 -5.7486 26 6 4.9293 1.9080 -4.8262 27 6 3.5986 1.2148 -5.1256 28 1 3.5865 0.8837 -6.1640 29 6 3.4348 0.0051 -4.2032 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 2.9939 4.1462 1.3745 36 1 2.6952 3.5574 -3.2795 37 1 1.0626 1.2646 -6.2513 38 1 1.0476 0.5834 -4.6068 39 1 0.1951 3.2911 -4.5123 40 1 -2.8136 4.6112 -3.9357 41 1 2.6006 3.0744 -6.8505 42 1 1.7925 4.1039 -5.6438 43 1 4.0596 4.9599 -6.1700 44 1 3.9545 4.4291 -4.4740 45 1 5.0812 2.7869 -6.7871 46 1 6.0411 3.6113 -5.5349 47 1 5.7486 1.2090 -4.9946 48 1 4.9412 2.2386 -3.7877 49 1 2.4309 -0.4044 -4.3157 50 1 4.1693 -0.7556 -4.4678 51 1 3.5876 0.3134 -3.1690 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753536408.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:52 Heat of formation + Delta-G solvation = 33.500825 kcal Electronic energy + Delta-G solvation = -31914.486912 eV Core-core repulsion = 28043.037639 eV Total energy + Delta-G solvation = -3871.449273 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.11541 -40.57590 -37.58889 -34.67305 -34.13901 -33.08921 -32.57600 -31.84499 -31.07975 -29.50932 -28.57841 -26.38076 -24.99882 -23.98322 -22.98525 -22.60594 -21.43062 -21.21797 -20.48450 -19.43521 -18.80794 -18.54610 -17.14596 -16.13624 -15.89365 -15.37538 -14.99080 -14.66426 -14.38706 -14.28602 -14.09064 -13.79793 -13.66287 -13.55893 -13.41245 -13.12450 -12.99284 -12.52647 -12.34540 -12.02855 -11.87038 -11.79659 -11.44530 -11.38188 -11.18581 -11.10011 -10.88581 -10.78659 -10.75166 -10.61298 -10.43365 -10.10419 -10.07586 -10.01235 -9.86802 -9.68166 -9.58544 -9.23333 -8.65518 -8.36951 -8.26005 -6.75652 -5.69001 -2.93448 1.54700 2.98937 3.03021 3.45954 3.49198 3.54497 3.55188 3.74339 4.53747 4.65701 4.77950 4.81920 4.84130 4.99588 5.15750 5.20618 5.23060 5.32925 5.52739 5.55814 5.59681 5.67281 5.68189 5.75085 5.81174 5.85161 5.87865 5.96831 5.97918 6.03432 6.07560 6.18691 6.23078 6.25642 6.32708 6.34742 6.36107 6.46613 6.55179 6.64087 6.65583 6.70718 6.77926 6.85339 7.05956 7.24454 7.28971 7.79756 7.84255 8.08195 8.50924 8.65451 9.62455 10.21483 10.56468 11.54493 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007926 B = 0.006196 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3531.733077 B = 4518.258238 C = 6554.681479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.043 4.043 3 C 0.092 3.908 4 N -0.499 5.499 5 C 0.206 3.794 6 N -0.555 5.555 7 H 0.419 0.581 8 C -0.074 4.074 9 C 0.596 3.404 10 O -0.492 6.492 11 N -0.709 5.709 12 C 0.183 3.817 13 C 0.133 3.867 14 N -0.722 5.722 15 C -0.221 4.221 16 H 0.068 0.932 17 C -0.018 4.018 18 N -0.938 5.938 19 Si 0.903 3.097 20 H -0.291 1.291 21 H -0.294 1.294 22 H -0.283 1.283 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.110 4.110 27 C -0.093 4.093 28 H 0.074 0.926 29 C -0.144 4.144 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.210 0.790 36 H 0.386 0.614 37 H 0.014 0.986 38 H 0.068 0.932 39 H 0.379 0.621 40 H 0.251 0.749 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.057 0.943 49 H 0.085 0.915 50 H 0.028 0.972 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.364 0.122 3.367 17.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.082 4.082 3 C -0.042 4.042 4 N -0.219 5.219 5 C -0.078 4.078 6 N -0.160 5.160 7 H 0.257 0.743 8 C -0.190 4.190 9 C 0.383 3.617 10 O -0.366 6.366 11 N -0.360 5.360 12 C 0.097 3.903 13 C 0.005 3.995 14 N -0.365 5.365 15 C -0.353 4.353 16 H 0.086 0.914 17 C -0.213 4.213 18 N -0.589 5.589 19 Si 0.735 3.265 20 H -0.219 1.219 21 H -0.220 1.220 22 H -0.209 1.209 23 C -0.159 4.159 24 C -0.156 4.156 25 C -0.156 4.156 26 C -0.147 4.147 27 C -0.112 4.112 28 H 0.092 0.908 29 C -0.201 4.201 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.227 0.773 36 H 0.219 0.781 37 H 0.031 0.969 38 H 0.086 0.914 39 H 0.213 0.787 40 H 0.061 0.939 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.103 0.897 50 H 0.047 0.953 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.839 -1.115 3.895 17.320 hybrid contribution -0.651 1.603 -0.832 1.919 sum 16.189 0.488 3.064 16.483 Atomic orbital electron populations 1.21622 0.94166 1.01555 1.02397 1.20007 0.96414 0.88697 1.03059 1.20991 0.99336 0.97240 0.86634 1.70075 1.18378 1.02751 1.30707 1.24994 1.02636 0.97985 0.82163 1.43314 1.50622 1.13357 1.08688 0.74267 1.21230 1.14392 0.87674 0.95744 1.16481 0.78064 0.85185 0.82019 1.90818 1.43750 1.20360 1.81691 1.45706 1.71232 1.12824 1.06274 1.20599 0.95999 0.94008 0.79667 1.21342 0.85278 0.95680 0.97209 1.42159 1.00863 1.14030 1.79491 1.19206 0.83149 0.97565 1.35378 0.91443 1.24636 0.97582 0.96290 1.02747 1.69642 1.30390 1.06840 1.51984 0.86237 0.85422 0.77238 0.77652 1.21894 1.22042 1.20894 1.21804 0.97295 0.97087 0.99706 1.21553 0.95025 0.98077 1.00944 1.21549 0.97769 0.96303 1.00002 1.21547 0.97074 0.96679 0.99420 1.21494 0.93713 0.95622 1.00413 0.90769 1.22411 1.02429 0.96050 0.99221 0.91546 0.92552 0.93335 0.88852 0.91385 0.77323 0.78105 0.96869 0.91422 0.78718 0.93919 0.90514 0.90184 0.91922 0.92747 0.91983 0.92561 0.92454 0.92382 0.89673 0.95300 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.89 37.15 0.37 -1.94 16 2 C -0.04 -0.68 5.93 -27.88 -0.17 -0.85 16 3 C 0.09 1.50 6.40 -82.51 -0.53 0.97 16 4 N -0.50 -7.64 11.20 -10.64 -0.12 -7.76 16 5 C 0.21 2.37 13.01 -90.57 -1.18 1.19 16 6 N -0.55 -6.40 6.08 -10.79 -0.07 -6.46 16 7 H 0.42 3.43 8.33 -40.82 -0.34 3.09 16 8 C -0.07 -1.16 7.07 -82.14 -0.58 -1.74 16 9 C 0.60 9.97 5.84 -12.81 -0.07 9.90 16 10 O -0.49 -9.31 8.27 5.20 0.04 -9.27 16 11 N -0.71 -10.36 3.57 -48.88 -0.17 -10.54 16 12 C 0.18 2.78 0.32 -131.82 -0.04 2.74 16 13 C 0.13 2.69 4.44 -4.04 -0.02 2.67 16 14 N -0.72 -17.82 5.17 -59.91 -0.31 -18.13 16 15 C -0.22 -6.26 9.99 -15.06 -0.15 -6.42 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 17 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 18 N -0.94 -28.31 13.06 55.49 0.72 -27.58 16 19 Si 0.90 23.10 29.55 -169.99 -5.02 18.08 16 20 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 21 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 22 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 23 C -0.12 -1.67 4.70 -26.73 -0.13 -1.80 16 24 C -0.12 -1.25 5.75 -26.73 -0.15 -1.40 16 25 C -0.12 -1.16 5.92 -26.74 -0.16 -1.32 16 26 C -0.11 -1.21 5.04 -26.73 -0.13 -1.34 16 27 C -0.09 -1.23 2.07 -90.62 -0.19 -1.42 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 C -0.14 -2.12 7.29 37.16 0.27 -1.85 16 30 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 1.51 6.48 -51.93 -0.34 1.17 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.21 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.39 4.83 6.33 -40.82 -0.26 4.57 16 37 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 1.49 4.24 -51.93 -0.22 1.27 16 39 H 0.38 9.71 6.50 -40.82 -0.27 9.44 16 40 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.08 1.31 7.17 -51.93 -0.37 0.94 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.53 6.70 -51.93 -0.35 0.18 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.66 7.60 -51.93 -0.39 0.27 16 49 H 0.08 1.46 5.04 -51.93 -0.26 1.20 16 50 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.06 0.92 5.32 -51.93 -0.28 0.65 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -33.68 383.00 -10.22 -43.91 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -8.12 Total: 15.20 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -2.95 Total: -3.22 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: 0.06 Total: -70.47 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.04 Total: -9.27 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.68 -10.22 -43.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753536408.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.408 kcal (2) G-P(sol) polarization free energy of solvation -33.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds