Wall clock time and date at job start Tue Mar 31 2020 18:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50706 * 109.47177 * 2 1 4 4 N 1.33324 * 126.10410 * 89.96918 * 3 2 1 5 5 C 1.30862 * 109.68114 * 180.02562 * 4 3 2 6 6 N 1.34496 * 109.16460 * 0.02562 * 5 4 3 7 7 H 0.96996 * 126.47665 * 180.02562 * 6 5 4 8 8 C 1.36658 * 126.10791 * 270.00420 * 3 2 1 9 9 C 1.46767 * 126.84389 * 359.97213 * 8 3 2 10 10 O 1.21682 * 120.00208 * 0.02562 * 9 8 3 11 11 N 1.34776 * 120.00121 * 180.02562 * 9 8 3 12 12 C 1.46501 * 120.00363 * 173.99381 * 11 9 8 13 13 C 1.53004 * 109.46932 * 51.14502 * 12 11 9 14 14 N 1.46502 * 109.47209 * 54.12962 * 13 12 11 15 15 C 1.36933 * 120.00090 * 183.51851 * 14 13 12 16 16 H 1.08001 * 119.99952 * 0.02562 * 15 14 13 17 17 C 1.38813 * 120.00025 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99783 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99895 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47146 * 90.00229 * 19 17 15 21 21 H 1.48507 * 109.47322 * 209.99978 * 19 17 15 22 22 H 1.48498 * 109.47387 * 329.99834 * 19 17 15 23 23 C 1.52995 * 109.47369 * 171.14223 * 12 11 9 24 24 C 1.53004 * 109.46866 * 60.00238 * 23 12 11 25 25 C 1.52993 * 109.47134 * 59.99858 * 24 23 12 26 26 C 1.52995 * 109.47360 * 299.99840 * 25 24 23 27 27 C 1.52993 * 109.47071 * 291.14634 * 12 11 9 28 28 H 1.09001 * 109.47277 * 179.97438 * 27 12 11 29 29 C 1.53004 * 109.47309 * 59.99755 * 27 12 11 30 30 H 1.09007 * 109.47477 * 59.99853 * 1 2 3 31 31 H 1.09000 * 109.47544 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47746 * 299.99954 * 1 2 3 33 33 H 1.08997 * 109.47746 * 240.00046 * 2 1 3 34 34 H 1.09001 * 109.47428 * 119.99445 * 2 1 3 35 35 H 1.07995 * 125.41424 * 179.97438 * 5 4 3 36 36 H 0.97001 * 119.99670 * 353.99085 * 11 9 8 37 37 H 1.08996 * 109.47213 * 174.13468 * 13 12 11 38 38 H 1.09004 * 109.46669 * 294.13332 * 13 12 11 39 39 H 0.97002 * 119.99919 * 3.52695 * 14 13 12 40 40 H 0.97006 * 119.99779 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.47382 * 179.97438 * 23 12 11 42 42 H 1.08998 * 109.47505 * 300.00369 * 23 12 11 43 43 H 1.09002 * 109.46831 * 179.97438 * 24 23 12 44 44 H 1.09001 * 109.47208 * 299.99607 * 24 23 12 45 45 H 1.09002 * 109.47182 * 60.00340 * 25 24 23 46 46 H 1.09003 * 109.47320 * 180.02562 * 25 24 23 47 47 H 1.08998 * 109.47505 * 179.97438 * 26 25 24 48 48 H 1.08996 * 109.47530 * 299.99939 * 26 25 24 49 49 H 1.09003 * 109.47139 * 52.03176 * 29 27 12 50 50 H 1.08998 * 109.47000 * 172.03500 * 29 27 12 51 51 H 1.08994 * 109.47192 * 292.03372 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2936 2.1617 1.0772 5 6 2.7117 3.3453 0.7072 6 7 2.7329 3.4060 -0.6362 7 1 3.0019 4.1665 -1.1749 8 6 2.3007 2.1802 -1.1041 9 6 2.1577 1.7743 -2.5072 10 8 1.7624 0.6563 -2.7800 11 7 2.4641 2.6400 -3.4937 12 6 2.4483 2.1955 -4.8896 13 6 1.1175 1.5023 -5.1890 14 7 0.0112 2.3932 -4.8301 15 6 -1.2823 1.9584 -4.9433 16 1 -1.4870 0.9586 -5.2967 17 6 -2.3305 2.8027 -4.6037 18 7 -2.0810 4.0213 -4.1734 19 14 -4.0951 2.2098 -4.7588 20 1 -4.5189 1.5778 -3.4836 21 1 -4.9807 3.3640 -5.0574 22 1 -4.1888 1.2165 -5.8587 23 6 2.6120 3.4051 -5.8119 24 6 3.9427 4.0983 -5.5126 25 6 5.0930 3.1176 -5.7486 26 6 4.9293 1.9080 -4.8262 27 6 3.5986 1.2148 -5.1256 28 1 3.5865 0.8837 -6.1640 29 6 3.4348 0.0051 -4.2032 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 2.9939 4.1462 1.3745 36 1 2.6952 3.5574 -3.2795 37 1 1.0626 1.2646 -6.2513 38 1 1.0476 0.5834 -4.6068 39 1 0.1951 3.2911 -4.5123 40 1 -2.8136 4.6112 -3.9357 41 1 2.6006 3.0744 -6.8505 42 1 1.7925 4.1039 -5.6438 43 1 4.0596 4.9599 -6.1700 44 1 3.9545 4.4291 -4.4740 45 1 5.0812 2.7869 -6.7871 46 1 6.0411 3.6113 -5.5349 47 1 5.7486 1.2090 -4.9946 48 1 4.9412 2.2386 -3.7877 49 1 2.4309 -0.4044 -4.3157 50 1 4.1693 -0.7556 -4.4678 51 1 3.5876 0.3134 -3.1690 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753536408.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:51 Heat of formation + Delta-G solvation = 12.215592 kcal Electronic energy + Delta-G solvation = -31915.409909 eV Core-core repulsion = 28043.037639 eV Total energy + Delta-G solvation = -3872.372270 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.19547 -41.78703 -38.78429 -36.37429 -35.40891 -34.45749 -33.75121 -33.15758 -32.62868 -30.98271 -29.74021 -27.73924 -26.50607 -25.22821 -24.71902 -23.76578 -22.60791 -22.36322 -21.57407 -20.60862 -20.03046 -19.64564 -19.17104 -17.28896 -17.16540 -16.80588 -16.31519 -16.06624 -15.68974 -15.44448 -15.28162 -15.24757 -14.84451 -14.82034 -14.75867 -14.69174 -14.30826 -13.96972 -13.63038 -13.31369 -13.28061 -12.96948 -12.84863 -12.76788 -12.64934 -12.52360 -12.39528 -12.31716 -12.08685 -11.93703 -11.85732 -11.81674 -11.38449 -11.22379 -11.05453 -11.00419 -10.93086 -10.78304 -10.37113 -9.65805 -9.40261 -8.84741 -7.93371 -5.16152 0.41845 1.41974 1.44385 1.51441 1.94670 2.01515 2.29166 2.49264 2.56109 3.40674 3.56979 3.67946 3.77005 3.83483 3.93265 4.10591 4.15566 4.19032 4.24475 4.37995 4.48328 4.52727 4.54324 4.57221 4.62376 4.70245 4.70556 4.76649 4.80891 4.92515 4.95305 5.03514 5.04837 5.13253 5.19766 5.23062 5.25590 5.29154 5.34334 5.36338 5.39838 5.45705 5.50469 5.54834 5.59267 5.76776 5.78600 6.30148 6.42006 6.65332 7.00487 7.37294 7.40667 8.15512 8.41608 9.29807 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007926 B = 0.006196 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3531.733077 B = 4518.258238 C = 6554.681479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.040 4.040 3 C 0.072 3.928 4 N -0.533 5.533 5 C 0.230 3.770 6 N -0.542 5.542 7 H 0.436 0.564 8 C -0.098 4.098 9 C 0.590 3.410 10 O -0.522 6.522 11 N -0.699 5.699 12 C 0.191 3.809 13 C 0.131 3.869 14 N -0.724 5.724 15 C -0.228 4.228 16 H 0.061 0.939 17 C -0.072 4.072 18 N -0.964 5.964 19 Si 0.961 3.039 20 H -0.294 1.294 21 H -0.292 1.292 22 H -0.273 1.273 23 C -0.116 4.116 24 C -0.112 4.112 25 C -0.113 4.113 26 C -0.102 4.102 27 C -0.088 4.088 28 H 0.077 0.923 29 C -0.135 4.135 30 H 0.023 0.977 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.262 0.738 36 H 0.397 0.603 37 H 0.007 0.993 38 H 0.051 0.949 39 H 0.374 0.626 40 H 0.247 0.753 41 H 0.075 0.925 42 H 0.051 0.949 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.070 0.930 48 H 0.056 0.944 49 H 0.053 0.947 50 H 0.043 0.957 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.601 1.395 3.733 20.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.079 4.079 3 C -0.062 4.062 4 N -0.253 5.253 5 C -0.055 4.055 6 N -0.148 5.148 7 H 0.277 0.723 8 C -0.214 4.214 9 C 0.377 3.623 10 O -0.399 6.399 11 N -0.351 5.351 12 C 0.105 3.895 13 C 0.004 3.996 14 N -0.366 5.366 15 C -0.361 4.361 16 H 0.079 0.921 17 C -0.264 4.264 18 N -0.616 5.616 19 Si 0.791 3.209 20 H -0.222 1.222 21 H -0.219 1.219 22 H -0.199 1.199 23 C -0.154 4.154 24 C -0.149 4.149 25 C -0.150 4.150 26 C -0.140 4.140 27 C -0.107 4.107 28 H 0.096 0.904 29 C -0.192 4.192 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.277 0.723 36 H 0.233 0.767 37 H 0.024 0.976 38 H 0.068 0.932 39 H 0.207 0.793 40 H 0.056 0.944 41 H 0.094 0.906 42 H 0.070 0.930 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.061 0.939 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 19.115 0.175 4.226 19.578 hybrid contribution -1.336 1.171 -0.911 1.997 sum 17.779 1.346 3.316 18.136 Atomic orbital electron populations 1.21509 0.95113 1.01904 1.00185 1.19933 0.95455 0.89296 1.03190 1.21126 0.99883 0.97623 0.87521 1.70066 1.20200 1.04319 1.30707 1.26013 0.99276 0.97759 0.82417 1.43236 1.49855 1.12648 1.09032 0.72279 1.21032 1.16077 0.89385 0.94921 1.16754 0.77646 0.85015 0.82872 1.90816 1.45119 1.21654 1.82290 1.45586 1.70671 1.13182 1.05678 1.20457 0.93833 0.94855 0.80335 1.21426 0.86944 0.95071 0.96155 1.42205 1.00905 1.14276 1.79210 1.19485 0.84949 0.97219 1.34408 0.92111 1.25315 1.01015 0.96659 1.03416 1.69768 1.30976 1.07643 1.53239 0.85314 0.81201 0.76866 0.77508 1.22217 1.21875 1.19850 1.21733 0.98609 0.95888 0.99176 1.21530 0.92993 0.98390 1.02012 1.21525 0.98274 0.95404 0.99831 1.21491 0.95425 0.97335 0.99732 1.21457 0.94409 0.94696 1.00187 0.90433 1.22241 1.00919 0.96984 0.99077 0.95727 0.90987 0.93207 0.89990 0.89808 0.72261 0.76738 0.97568 0.93171 0.79345 0.94387 0.90622 0.93047 0.90479 0.91634 0.91611 0.90223 0.91169 0.92492 0.92792 0.93853 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 9.89 71.98 0.71 -3.74 16 2 C -0.04 -1.31 5.93 29.85 0.18 -1.13 16 3 C 0.07 2.37 6.40 41.96 0.27 2.64 16 4 N -0.53 -15.57 11.20 -187.59 -2.10 -17.68 16 5 C 0.23 4.63 13.01 180.33 2.35 6.97 16 6 N -0.54 -11.43 6.08 -188.04 -1.14 -12.57 16 7 H 0.44 5.99 8.33 -92.71 -0.77 5.22 16 8 C -0.10 -3.02 7.07 40.01 0.28 -2.74 16 9 C 0.59 20.20 5.84 86.47 0.51 20.71 16 10 O -0.52 -20.87 8.27 -4.29 -0.04 -20.90 16 11 N -0.70 -20.40 3.57 -426.77 -1.53 -21.92 16 12 C 0.19 5.83 0.32 3.60 0.00 5.83 16 13 C 0.13 5.53 4.44 86.38 0.38 5.92 16 14 N -0.72 -37.03 5.17 -343.44 -1.77 -38.80 16 15 C -0.23 -13.30 9.99 84.03 0.84 -12.46 16 16 H 0.06 3.55 7.83 -2.91 -0.02 3.53 16 17 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 18 N -0.96 -59.24 13.06 21.65 0.28 -58.96 16 19 Si 0.96 48.37 29.55 68.60 2.03 50.40 16 20 H -0.29 -14.88 7.11 99.48 0.71 -14.17 16 21 H -0.29 -14.55 7.11 99.48 0.71 -13.85 16 22 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 23 C -0.12 -3.13 4.70 30.59 0.14 -2.98 16 24 C -0.11 -2.04 5.75 30.59 0.18 -1.87 16 25 C -0.11 -1.81 5.92 30.59 0.18 -1.62 16 26 C -0.10 -1.98 5.04 30.59 0.15 -1.82 16 27 C -0.09 -2.27 2.07 -10.79 -0.02 -2.29 16 28 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 29 C -0.14 -4.03 7.29 71.98 0.52 -3.51 16 30 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 2.80 6.48 -2.39 -0.02 2.79 16 34 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.26 2.19 8.06 -2.91 -0.02 2.17 16 36 H 0.40 9.54 6.33 -92.71 -0.59 8.95 16 37 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.05 2.35 4.24 -2.39 -0.01 2.34 16 39 H 0.37 19.74 6.50 -92.71 -0.60 19.14 16 40 H 0.25 14.84 8.31 -92.70 -0.77 14.07 16 41 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.05 1.69 7.17 -2.39 -0.02 1.67 16 43 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.07 1.06 6.70 -2.39 -0.02 1.05 16 45 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.06 1.14 7.60 -2.39 -0.02 1.12 16 49 H 0.05 1.95 5.04 -2.39 -0.01 1.94 16 50 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 51 H 0.05 1.58 5.32 -2.39 -0.01 1.57 16 Total: -1.00 -76.23 383.00 1.88 -74.36 By element: Atomic # 1 Polarization: 42.96 SS G_CDS: -0.99 Total: 41.97 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 7.14 Total: 4.11 kcal Atomic # 7 Polarization: -143.67 SS G_CDS: -6.26 Total: -149.93 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.04 Total: -20.90 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.03 Total: 50.40 kcal Total: -76.23 1.88 -74.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753536408.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.571 kcal (2) G-P(sol) polarization free energy of solvation -76.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds