Wall clock time and date at job start Tue Mar 31 2020 18:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46970 * 2 1 4 4 N 1.33315 * 126.10475 * 269.69315 * 3 2 1 5 5 C 1.30861 * 109.68312 * 179.82250 * 4 3 2 6 6 N 1.34492 * 109.16461 * 0.44414 * 5 4 3 7 7 H 0.96995 * 126.47902 * 179.74804 * 6 5 4 8 8 C 1.36661 * 126.10618 * 89.99896 * 3 2 1 9 9 C 1.46762 * 126.84599 * 0.02562 * 8 3 2 10 10 O 1.21679 * 119.99920 * 359.97438 * 9 8 3 11 11 N 1.34780 * 120.00014 * 179.97438 * 9 8 3 12 12 C 1.46500 * 119.99988 * 174.67055 * 11 9 8 13 13 C 1.53005 * 109.46750 * 303.93307 * 12 11 9 14 14 N 1.46495 * 109.47342 * 305.52589 * 13 12 11 15 15 C 1.36933 * 119.99970 * 175.03724 * 14 13 12 16 16 H 1.08004 * 120.00025 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00288 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99653 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00223 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47210 * 359.97438 * 19 17 15 21 21 H 1.48509 * 109.47297 * 120.00094 * 19 17 15 22 22 H 1.48504 * 109.47236 * 239.99680 * 19 17 15 23 23 C 1.53001 * 109.46976 * 183.93757 * 12 11 9 24 24 C 1.52998 * 109.47004 * 299.99654 * 23 12 11 25 25 C 1.52993 * 109.47120 * 299.99789 * 24 23 12 26 26 C 1.53001 * 109.47010 * 60.00215 * 25 24 23 27 27 C 1.52998 * 109.47374 * 299.99806 * 26 25 24 28 28 H 1.08996 * 109.47277 * 179.97438 * 27 26 25 29 29 C 1.53000 * 109.47125 * 300.00157 * 27 26 25 30 30 H 1.08998 * 109.47247 * 59.99704 * 1 2 3 31 31 H 1.09007 * 109.47398 * 299.99927 * 1 2 3 32 32 H 1.09000 * 109.47462 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47207 * 119.99740 * 2 1 3 34 34 H 1.08993 * 109.46874 * 240.00100 * 2 1 3 35 35 H 1.08000 * 125.41926 * 180.13568 * 5 4 3 36 36 H 0.97001 * 119.99918 * 354.66595 * 11 9 8 37 37 H 1.09003 * 109.46919 * 65.52929 * 13 12 11 38 38 H 1.08997 * 109.46679 * 185.51928 * 13 12 11 39 39 H 0.96998 * 120.00048 * 355.03656 * 14 13 12 40 40 H 0.97003 * 119.99692 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.46847 * 59.99937 * 23 12 11 42 42 H 1.09003 * 109.47163 * 179.97438 * 23 12 11 43 43 H 1.09005 * 109.46773 * 180.02562 * 24 23 12 44 44 H 1.09000 * 109.47335 * 60.00470 * 24 23 12 45 45 H 1.09000 * 109.47573 * 300.00535 * 25 24 23 46 46 H 1.09006 * 109.47239 * 179.97438 * 25 24 23 47 47 H 1.09007 * 109.47281 * 179.97438 * 26 25 24 48 48 H 1.09003 * 109.47163 * 59.99938 * 26 25 24 49 49 H 1.08992 * 109.47191 * 179.97438 * 29 27 26 50 50 H 1.09002 * 109.46940 * 300.00137 * 29 27 26 51 51 H 1.08996 * 109.47292 * 59.99704 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2996 2.1596 -1.0771 5 6 2.7125 3.3450 -0.7072 6 7 2.7340 3.4057 0.6362 7 1 3.0026 4.1662 1.1749 8 6 2.3007 2.1801 1.1041 9 6 2.1578 1.7743 2.5073 10 8 1.7625 0.6563 2.7800 11 7 2.4643 2.6400 3.4937 12 6 2.2118 2.2780 4.8907 13 6 0.7359 1.9138 5.0643 14 7 -0.0993 3.0137 4.5756 15 6 -1.4608 2.8738 4.5352 16 1 -1.9190 1.9527 4.8641 17 6 -2.2523 3.9161 4.0726 18 7 -1.6939 5.0388 3.6724 19 14 -4.1097 3.7255 4.0183 20 1 -4.4839 2.3783 4.5185 21 1 -4.7392 4.7640 4.8731 22 1 -4.5827 3.8826 2.6193 23 6 2.5543 3.4639 5.7947 24 6 4.0301 3.8281 5.6210 25 6 4.8997 2.6284 6.0022 26 6 4.5572 1.4425 5.0982 27 6 3.0814 1.0783 5.2718 28 1 2.8374 0.2337 4.6275 29 6 2.8177 0.7002 6.7307 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 2.9961 4.1454 -1.3745 36 1 2.8521 3.5028 3.2788 37 1 0.5155 1.0100 4.4963 38 1 0.5265 1.7397 6.1197 39 1 0.3122 3.8411 4.2806 40 1 -2.2470 5.7670 3.3488 41 1 1.9346 4.3185 5.5231 42 1 2.3660 3.1947 6.8341 43 1 4.2741 4.6727 6.2654 44 1 4.2180 4.0975 4.5817 45 1 4.7118 2.3590 7.0416 46 1 5.9511 2.8877 5.8780 47 1 5.1771 0.5879 5.3694 48 1 4.7451 1.7118 4.0588 49 1 1.7663 0.4412 6.8546 50 1 3.4373 -0.1544 7.0023 51 1 3.0616 1.5450 7.3748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753536409.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:58 Heat of formation + Delta-G solvation = 14.747172 kcal Electronic energy + Delta-G solvation = -31631.874012 eV Core-core repulsion = 27759.611520 eV Total energy + Delta-G solvation = -3872.262492 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.06847 -40.46808 -37.78935 -34.78994 -34.15520 -33.14457 -32.20468 -31.77340 -31.08104 -29.57088 -28.72934 -26.48790 -25.08799 -23.87225 -22.99208 -22.56131 -22.00981 -21.38679 -20.36640 -19.42729 -18.57548 -18.04410 -17.12668 -16.23842 -15.62122 -15.40577 -15.31973 -14.69616 -14.52397 -14.24184 -14.04927 -13.80541 -13.60923 -13.50811 -13.25431 -13.12759 -12.93770 -12.71182 -12.39680 -12.28377 -12.04515 -11.98492 -11.50881 -11.47495 -11.13880 -11.12683 -10.96526 -10.83136 -10.76209 -10.63937 -10.29237 -10.21672 -10.12961 -10.03899 -9.85932 -9.80024 -9.65075 -9.23616 -8.77433 -8.59184 -8.24002 -6.83698 -5.74524 -2.99679 1.55448 3.00386 3.06084 3.42257 3.45344 3.51772 3.53362 3.73989 4.55743 4.61724 4.76490 4.83539 4.86026 5.02228 5.17651 5.23388 5.27200 5.32522 5.47064 5.51158 5.61944 5.64012 5.71205 5.75070 5.78931 5.81035 5.84352 5.89652 5.96343 5.98200 6.03614 6.11613 6.17236 6.18061 6.27028 6.30325 6.39937 6.47645 6.51698 6.54965 6.59699 6.69454 6.71359 6.79644 6.92694 7.10673 7.31925 7.75533 7.81052 8.09161 8.45355 8.58424 9.57182 10.15003 10.50275 11.48895 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007269 B = 0.006377 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3851.013574 B = 4389.519392 C = 6669.363132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.043 4.043 3 C 0.092 3.908 4 N -0.500 5.500 5 C 0.209 3.791 6 N -0.552 5.552 7 H 0.421 0.579 8 C -0.076 4.076 9 C 0.606 3.394 10 O -0.514 6.514 11 N -0.709 5.709 12 C 0.185 3.815 13 C 0.139 3.861 14 N -0.724 5.724 15 C -0.225 4.225 16 H 0.069 0.931 17 C -0.016 4.016 18 N -0.937 5.937 19 Si 0.903 3.097 20 H -0.280 1.280 21 H -0.293 1.293 22 H -0.293 1.293 23 C -0.123 4.123 24 C -0.118 4.118 25 C -0.120 4.120 26 C -0.109 4.109 27 C -0.099 4.099 28 H 0.092 0.908 29 C -0.148 4.148 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.211 0.789 36 H 0.387 0.613 37 H 0.049 0.951 38 H 0.023 0.977 39 H 0.380 0.620 40 H 0.251 0.749 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.050 0.950 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.398 -3.180 -0.823 16.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.082 4.082 3 C -0.042 4.042 4 N -0.220 5.220 5 C -0.075 4.075 6 N -0.157 5.157 7 H 0.259 0.741 8 C -0.192 4.192 9 C 0.392 3.608 10 O -0.390 6.390 11 N -0.359 5.359 12 C 0.100 3.900 13 C 0.011 3.989 14 N -0.368 5.368 15 C -0.357 4.357 16 H 0.087 0.913 17 C -0.211 4.211 18 N -0.587 5.587 19 Si 0.735 3.265 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.220 1.220 23 C -0.161 4.161 24 C -0.156 4.156 25 C -0.157 4.157 26 C -0.146 4.146 27 C -0.119 4.119 28 H 0.110 0.890 29 C -0.206 4.206 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.227 0.773 36 H 0.220 0.780 37 H 0.067 0.933 38 H 0.040 0.960 39 H 0.213 0.787 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.081 0.919 50 H 0.069 0.931 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.821 -4.364 -1.375 16.470 hybrid contribution -0.592 1.795 0.640 1.995 sum 15.229 -2.570 -0.735 15.462 Atomic orbital electron populations 1.21624 0.94228 1.01459 1.02418 1.19999 0.96381 0.88755 1.03039 1.20979 0.99294 0.97217 0.86667 1.70070 1.18501 1.02772 1.30645 1.25001 1.02426 0.97880 0.82164 1.43293 1.50375 1.13300 1.08713 0.74126 1.21114 1.14685 0.87793 0.95571 1.16600 0.77109 0.84936 0.82169 1.90736 1.45840 1.19949 1.82442 1.45786 1.64850 1.18904 1.06378 1.20541 0.96050 0.94137 0.79310 1.21162 0.87012 0.93510 0.97180 1.42211 1.02962 1.14096 1.77532 1.19268 0.82867 0.98939 1.34613 0.91328 1.24649 0.97709 0.96393 1.02386 1.69648 1.33806 1.04869 1.50392 0.86159 0.86070 0.77152 0.77152 1.20576 1.22050 1.22030 1.21838 0.95595 0.98253 1.00388 1.21542 0.95389 0.97729 1.00894 1.21581 0.98601 0.95421 1.00146 1.21491 0.96130 0.97540 0.99455 1.21453 0.94015 0.98702 0.97688 0.89023 1.21959 1.02109 1.00866 0.95627 0.93193 0.91721 0.92560 0.88953 0.91296 0.77253 0.77990 0.93284 0.95957 0.78678 0.93902 0.90375 0.90110 0.91969 0.92739 0.91622 0.92697 0.92453 0.92501 0.91934 0.93086 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.89 37.16 0.37 -1.92 16 2 C -0.04 -0.69 5.93 -27.88 -0.17 -0.85 16 3 C 0.09 1.55 6.40 -82.52 -0.53 1.02 16 4 N -0.50 -7.89 11.20 -10.64 -0.12 -8.01 16 5 C 0.21 2.55 13.01 -90.57 -1.18 1.37 16 6 N -0.55 -6.83 6.08 -10.79 -0.07 -6.89 16 7 H 0.42 3.87 8.33 -40.82 -0.34 3.53 16 8 C -0.08 -1.22 7.07 -82.14 -0.58 -1.80 16 9 C 0.61 10.46 7.20 -12.81 -0.09 10.37 16 10 O -0.51 -10.05 11.11 5.21 0.06 -9.99 16 11 N -0.71 -10.64 3.57 -48.87 -0.17 -10.82 16 12 C 0.19 2.86 0.09 -131.82 -0.01 2.84 16 13 C 0.14 2.84 4.27 -4.04 -0.02 2.82 16 14 N -0.72 -17.80 5.18 -59.91 -0.31 -18.11 16 15 C -0.23 -6.35 9.99 -15.06 -0.15 -6.50 16 16 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 17 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 18 N -0.94 -27.91 13.06 55.49 0.72 -27.18 16 19 Si 0.90 22.94 29.55 -169.99 -5.02 17.92 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 22 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 23 C -0.12 -1.70 4.40 -26.73 -0.12 -1.82 16 24 C -0.12 -1.27 5.75 -26.74 -0.15 -1.42 16 25 C -0.12 -1.21 5.65 -26.73 -0.15 -1.36 16 26 C -0.11 -1.24 5.29 -26.73 -0.14 -1.39 16 27 C -0.10 -1.36 2.10 -90.62 -0.19 -1.55 16 28 H 0.09 1.48 6.28 -51.93 -0.33 1.15 16 29 C -0.15 -1.84 8.15 37.16 0.30 -1.54 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.50 6.48 -51.93 -0.34 1.17 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.21 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.39 4.97 6.46 -40.82 -0.26 4.70 16 37 H 0.05 1.13 6.25 -51.93 -0.32 0.80 16 38 H 0.02 0.46 6.74 -51.93 -0.35 0.11 16 39 H 0.38 9.59 6.47 -40.82 -0.26 9.32 16 40 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.08 1.26 7.11 -51.93 -0.37 0.89 16 42 H 0.08 1.11 6.43 -51.93 -0.33 0.77 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.55 6.78 -51.93 -0.35 0.20 16 45 H 0.07 0.65 6.43 -51.93 -0.33 0.32 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 48 H 0.06 0.69 7.60 -51.93 -0.39 0.29 16 49 H 0.06 0.86 6.55 -51.93 -0.34 0.52 16 50 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.06 0.67 4.81 -51.93 -0.25 0.42 16 LS Contribution 383.82 15.07 5.78 5.78 Total: -1.00 -33.80 383.82 -9.96 -43.76 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -7.93 Total: 15.81 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -2.90 Total: -2.27 kcal Atomic # 7 Polarization: -71.07 SS G_CDS: 0.05 Total: -71.01 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.06 Total: -9.99 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.80 -9.96 -43.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753536409.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.508 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds