Wall clock time and date at job start Tue Mar 31 2020 18:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46970 * 2 1 4 4 N 1.33315 * 126.10475 * 269.69315 * 3 2 1 5 5 C 1.30861 * 109.68312 * 179.82250 * 4 3 2 6 6 N 1.34492 * 109.16461 * 0.44414 * 5 4 3 7 7 H 0.96995 * 126.47902 * 179.74804 * 6 5 4 8 8 C 1.36661 * 126.10618 * 89.99896 * 3 2 1 9 9 C 1.46762 * 126.84599 * 0.02562 * 8 3 2 10 10 O 1.21679 * 119.99920 * 359.97438 * 9 8 3 11 11 N 1.34780 * 120.00014 * 179.97438 * 9 8 3 12 12 C 1.46500 * 119.99988 * 174.67055 * 11 9 8 13 13 C 1.53005 * 109.46750 * 303.93307 * 12 11 9 14 14 N 1.46495 * 109.47342 * 305.52589 * 13 12 11 15 15 C 1.36933 * 119.99970 * 175.03724 * 14 13 12 16 16 H 1.08004 * 120.00025 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00288 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99653 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00223 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47210 * 359.97438 * 19 17 15 21 21 H 1.48509 * 109.47297 * 120.00094 * 19 17 15 22 22 H 1.48504 * 109.47236 * 239.99680 * 19 17 15 23 23 C 1.53001 * 109.46976 * 183.93757 * 12 11 9 24 24 C 1.52998 * 109.47004 * 299.99654 * 23 12 11 25 25 C 1.52993 * 109.47120 * 299.99789 * 24 23 12 26 26 C 1.53001 * 109.47010 * 60.00215 * 25 24 23 27 27 C 1.52998 * 109.47374 * 299.99806 * 26 25 24 28 28 H 1.08996 * 109.47277 * 179.97438 * 27 26 25 29 29 C 1.53000 * 109.47125 * 300.00157 * 27 26 25 30 30 H 1.08998 * 109.47247 * 59.99704 * 1 2 3 31 31 H 1.09007 * 109.47398 * 299.99927 * 1 2 3 32 32 H 1.09000 * 109.47462 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47207 * 119.99740 * 2 1 3 34 34 H 1.08993 * 109.46874 * 240.00100 * 2 1 3 35 35 H 1.08000 * 125.41926 * 180.13568 * 5 4 3 36 36 H 0.97001 * 119.99918 * 354.66595 * 11 9 8 37 37 H 1.09003 * 109.46919 * 65.52929 * 13 12 11 38 38 H 1.08997 * 109.46679 * 185.51928 * 13 12 11 39 39 H 0.96998 * 120.00048 * 355.03656 * 14 13 12 40 40 H 0.97003 * 119.99692 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.46847 * 59.99937 * 23 12 11 42 42 H 1.09003 * 109.47163 * 179.97438 * 23 12 11 43 43 H 1.09005 * 109.46773 * 180.02562 * 24 23 12 44 44 H 1.09000 * 109.47335 * 60.00470 * 24 23 12 45 45 H 1.09000 * 109.47573 * 300.00535 * 25 24 23 46 46 H 1.09006 * 109.47239 * 179.97438 * 25 24 23 47 47 H 1.09007 * 109.47281 * 179.97438 * 26 25 24 48 48 H 1.09003 * 109.47163 * 59.99938 * 26 25 24 49 49 H 1.08992 * 109.47191 * 179.97438 * 29 27 26 50 50 H 1.09002 * 109.46940 * 300.00137 * 29 27 26 51 51 H 1.08996 * 109.47292 * 59.99704 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2996 2.1596 -1.0771 5 6 2.7125 3.3450 -0.7072 6 7 2.7340 3.4057 0.6362 7 1 3.0026 4.1662 1.1749 8 6 2.3007 2.1801 1.1041 9 6 2.1578 1.7743 2.5073 10 8 1.7625 0.6563 2.7800 11 7 2.4643 2.6400 3.4937 12 6 2.2118 2.2780 4.8907 13 6 0.7359 1.9138 5.0643 14 7 -0.0993 3.0137 4.5756 15 6 -1.4608 2.8738 4.5352 16 1 -1.9190 1.9527 4.8641 17 6 -2.2523 3.9161 4.0726 18 7 -1.6939 5.0388 3.6724 19 14 -4.1097 3.7255 4.0183 20 1 -4.4839 2.3783 4.5185 21 1 -4.7392 4.7640 4.8731 22 1 -4.5827 3.8826 2.6193 23 6 2.5543 3.4639 5.7947 24 6 4.0301 3.8281 5.6210 25 6 4.8997 2.6284 6.0022 26 6 4.5572 1.4425 5.0982 27 6 3.0814 1.0783 5.2718 28 1 2.8374 0.2337 4.6275 29 6 2.8177 0.7002 6.7307 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 2.9961 4.1454 -1.3745 36 1 2.8521 3.5028 3.2788 37 1 0.5155 1.0100 4.4963 38 1 0.5265 1.7397 6.1197 39 1 0.3122 3.8411 4.2806 40 1 -2.2470 5.7670 3.3488 41 1 1.9346 4.3185 5.5231 42 1 2.3660 3.1947 6.8341 43 1 4.2741 4.6727 6.2654 44 1 4.2180 4.0975 4.5817 45 1 4.7118 2.3590 7.0416 46 1 5.9511 2.8877 5.8780 47 1 5.1771 0.5879 5.3694 48 1 4.7451 1.7118 4.0588 49 1 1.7663 0.4412 6.8546 50 1 3.4373 -0.1544 7.0023 51 1 3.0616 1.5450 7.3748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753536409.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:57 Heat of formation + Delta-G solvation = -6.704894 kcal Electronic energy + Delta-G solvation = -31632.804243 eV Core-core repulsion = 27759.611520 eV Total energy + Delta-G solvation = -3873.192723 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.19606 -41.69130 -39.04214 -36.48134 -35.47612 -34.56275 -33.54477 -32.88969 -32.65437 -31.04388 -29.91061 -27.81387 -26.62681 -25.11270 -24.73484 -23.75472 -23.06883 -22.59971 -21.61615 -20.64746 -19.71419 -19.49047 -18.92869 -17.39677 -17.00133 -16.66046 -16.52230 -16.28580 -15.81194 -15.65579 -15.26973 -15.12038 -15.05981 -14.82364 -14.65405 -14.44313 -14.34434 -13.97990 -13.75980 -13.58813 -13.30365 -13.13854 -12.94334 -12.88957 -12.65934 -12.47948 -12.42330 -12.28323 -12.09019 -11.99837 -11.95286 -11.83913 -11.43880 -11.23121 -11.13522 -11.01072 -10.98391 -10.89901 -10.43104 -9.91020 -9.43405 -8.92947 -7.97073 -5.21069 0.36690 1.40741 1.42505 1.51430 1.88692 1.98785 2.22776 2.44659 2.53306 3.36970 3.53495 3.62081 3.80409 3.82168 3.90718 4.07359 4.12625 4.21343 4.22576 4.36245 4.43705 4.47881 4.51408 4.55431 4.59099 4.67258 4.70760 4.76029 4.80246 4.83890 4.91878 4.98921 5.01917 5.13025 5.15711 5.18292 5.23989 5.25831 5.25932 5.32616 5.39942 5.43741 5.46839 5.51837 5.56214 5.57651 5.76562 6.26362 6.38109 6.58268 6.96478 7.28830 7.34262 8.09361 8.37195 9.25899 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007269 B = 0.006377 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3851.013574 B = 4389.519392 C = 6669.363132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.041 4.041 3 C 0.074 3.926 4 N -0.531 5.531 5 C 0.231 3.769 6 N -0.541 5.541 7 H 0.436 0.564 8 C -0.101 4.101 9 C 0.599 3.401 10 O -0.546 6.546 11 N -0.699 5.699 12 C 0.193 3.807 13 C 0.142 3.858 14 N -0.726 5.726 15 C -0.235 4.235 16 H 0.060 0.940 17 C -0.068 4.068 18 N -0.961 5.961 19 Si 0.961 3.039 20 H -0.274 1.274 21 H -0.288 1.288 22 H -0.296 1.296 23 C -0.117 4.117 24 C -0.112 4.112 25 C -0.114 4.114 26 C -0.102 4.102 27 C -0.094 4.094 28 H 0.062 0.938 29 C -0.145 4.145 30 H 0.049 0.951 31 H 0.023 0.977 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.262 0.738 36 H 0.398 0.602 37 H 0.020 0.980 38 H 0.022 0.978 39 H 0.376 0.624 40 H 0.249 0.751 41 H 0.052 0.948 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.050 0.950 49 H 0.041 0.959 50 H 0.068 0.932 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.415 -2.092 -0.814 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.079 4.079 3 C -0.060 4.060 4 N -0.252 5.252 5 C -0.053 4.053 6 N -0.147 5.147 7 H 0.277 0.723 8 C -0.218 4.218 9 C 0.386 3.614 10 O -0.424 6.424 11 N -0.350 5.350 12 C 0.107 3.893 13 C 0.015 3.985 14 N -0.369 5.369 15 C -0.367 4.367 16 H 0.078 0.922 17 C -0.260 4.260 18 N -0.612 5.612 19 Si 0.791 3.209 20 H -0.199 1.199 21 H -0.215 1.215 22 H -0.224 1.224 23 C -0.155 4.155 24 C -0.150 4.150 25 C -0.151 4.151 26 C -0.140 4.140 27 C -0.114 4.114 28 H 0.081 0.919 29 C -0.203 4.203 30 H 0.068 0.932 31 H 0.042 0.958 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.278 0.722 36 H 0.234 0.766 37 H 0.038 0.962 38 H 0.039 0.961 39 H 0.209 0.791 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.088 0.912 48 H 0.069 0.931 49 H 0.060 0.940 50 H 0.087 0.913 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 17.871 -3.260 -1.332 18.214 hybrid contribution -1.226 1.430 0.599 1.977 sum 16.644 -1.830 -0.733 16.760 Atomic orbital electron populations 1.21524 0.94950 1.02078 1.00220 1.19953 0.95632 0.89095 1.03268 1.21181 0.99644 0.97727 0.87447 1.70068 1.20224 1.04253 1.30611 1.26027 0.99174 0.97737 0.82376 1.43234 1.49712 1.12627 1.09096 0.72320 1.20970 1.16481 0.89480 0.94869 1.16873 0.76720 0.84774 0.83046 1.90718 1.47266 1.21334 1.83072 1.45676 1.64284 1.19084 1.05924 1.20429 0.92950 0.95935 0.80009 1.21194 0.90074 0.91199 0.96066 1.42249 1.02283 1.14899 1.77430 1.19515 0.84680 0.98540 1.34000 0.92167 1.25318 1.01484 0.96373 1.02839 1.69763 1.34845 1.05275 1.51314 0.85253 0.81588 0.77346 0.76727 1.19893 1.21526 1.22383 1.21771 0.97796 0.96156 0.99756 1.21528 0.92706 0.98743 1.01974 1.21562 0.99604 0.94026 0.99952 1.21444 0.94014 0.98872 0.99657 1.21365 0.95517 0.96674 0.97844 0.91925 1.21941 1.01181 1.02192 0.94956 0.93187 0.95766 0.90602 0.90063 0.89545 0.72242 0.76629 0.96244 0.96054 0.79123 0.94219 0.92903 0.89926 0.90233 0.91907 0.90928 0.90460 0.91221 0.93109 0.94026 0.91261 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 9.89 71.98 0.71 -3.73 16 2 C -0.04 -1.34 5.93 29.85 0.18 -1.17 16 3 C 0.07 2.52 6.40 41.97 0.27 2.78 16 4 N -0.53 -16.19 11.20 -187.59 -2.10 -18.29 16 5 C 0.23 5.07 13.01 180.33 2.35 7.42 16 6 N -0.54 -12.60 6.08 -188.04 -1.14 -13.74 16 7 H 0.44 7.16 8.33 -92.71 -0.77 6.39 16 8 C -0.10 -3.31 7.07 40.01 0.28 -3.03 16 9 C 0.60 21.43 7.20 86.47 0.62 22.05 16 10 O -0.55 -22.70 11.11 -4.28 -0.05 -22.75 16 11 N -0.70 -21.24 3.57 -426.75 -1.52 -22.76 16 12 C 0.19 6.02 0.09 3.61 0.00 6.02 16 13 C 0.14 6.05 4.27 86.38 0.37 6.42 16 14 N -0.73 -36.90 5.18 -343.45 -1.78 -38.68 16 15 C -0.24 -13.61 9.99 84.03 0.84 -12.77 16 16 H 0.06 3.52 7.83 -2.91 -0.02 3.49 16 17 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 18 N -0.96 -57.85 13.06 21.65 0.28 -57.56 16 19 Si 0.96 47.80 29.55 68.60 2.03 49.83 16 20 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 21 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 22 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 23 C -0.12 -3.13 4.40 30.59 0.13 -3.00 16 24 C -0.11 -2.09 5.75 30.59 0.18 -1.92 16 25 C -0.11 -1.91 5.65 30.59 0.17 -1.73 16 26 C -0.10 -2.14 5.29 30.59 0.16 -1.98 16 27 C -0.09 -2.57 2.10 -10.79 -0.02 -2.59 16 28 H 0.06 2.11 6.28 -2.39 -0.01 2.09 16 29 C -0.15 -3.51 8.15 71.98 0.59 -2.93 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.08 2.80 6.48 -2.39 -0.02 2.79 16 34 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.26 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.40 9.99 6.46 -92.71 -0.60 9.40 16 37 H 0.02 0.96 6.25 -2.39 -0.01 0.94 16 38 H 0.02 0.93 6.74 -2.39 -0.02 0.91 16 39 H 0.38 19.50 6.47 -92.71 -0.60 18.90 16 40 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 41 H 0.05 1.70 7.11 -2.39 -0.02 1.68 16 42 H 0.08 2.17 6.43 -2.39 -0.02 2.16 16 43 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 44 H 0.06 1.08 6.78 -2.39 -0.02 1.06 16 45 H 0.07 1.15 6.43 -2.39 -0.02 1.14 16 46 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 47 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 48 H 0.05 1.13 7.60 -2.39 -0.02 1.12 16 49 H 0.04 1.16 6.55 -2.39 -0.02 1.15 16 50 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 51 H 0.07 1.54 4.81 -2.39 -0.01 1.53 16 Total: -1.00 -76.17 383.82 2.02 -74.16 By element: Atomic # 1 Polarization: 44.42 SS G_CDS: -0.99 Total: 43.43 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 7.29 Total: 6.36 kcal Atomic # 7 Polarization: -144.76 SS G_CDS: -6.26 Total: -151.03 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.05 Total: -22.75 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -76.17 2.02 -74.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753536409.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.452 kcal (2) G-P(sol) polarization free energy of solvation -76.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds