Wall clock time and date at job start Tue Mar 31 2020 18:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46834 * 2 1 4 4 C 1.34666 * 126.59507 * 275.04617 * 3 2 1 5 5 N 1.34120 * 108.02377 * 179.74557 * 4 3 2 6 6 C 1.30503 * 109.25419 * 0.36969 * 5 4 3 7 7 C 1.50700 * 125.64966 * 179.89802 * 6 5 4 8 8 C 1.50702 * 109.46869 * 304.68678 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46931 * 120.63086 * 0.02562 * 10 8 7 12 12 C 1.53622 * 108.54424 * 126.36867 * 11 10 8 13 13 C 1.53036 * 109.24613 * 54.85288 * 12 11 10 14 14 C 1.52995 * 109.46103 * 178.49326 * 13 12 11 15 15 C 1.52997 * 109.47264 * 295.06762 * 14 13 12 16 16 N 1.46499 * 109.47690 * 179.97438 * 15 14 13 17 17 C 1.36938 * 120.00375 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99743 * 0.02562 * 17 16 15 19 19 C 1.38809 * 119.99976 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00061 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99896 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47068 * 90.00405 * 21 19 17 23 23 H 1.48500 * 109.46966 * 210.00135 * 21 19 17 24 24 H 1.48499 * 109.47470 * 330.00230 * 21 19 17 25 25 C 1.53046 * 109.53689 * 298.51382 * 13 12 11 26 26 C 1.46925 * 120.62933 * 180.27723 * 10 8 7 27 27 N 1.35041 * 108.70158 * 359.62956 * 6 5 4 28 28 H 0.96999 * 126.40013 * 180.25199 * 27 6 5 29 29 H 1.09006 * 109.47043 * 299.99028 * 1 2 3 30 30 H 1.08989 * 109.47804 * 59.99638 * 1 2 3 31 31 H 1.09001 * 109.46968 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46785 * 240.00222 * 2 1 3 33 33 H 1.09001 * 109.47143 * 120.00373 * 2 1 3 34 34 H 1.08006 * 125.98558 * 359.97438 * 4 3 2 35 35 H 1.09004 * 109.47210 * 184.68971 * 7 6 5 36 36 H 1.08994 * 109.47551 * 64.68624 * 7 6 5 37 37 H 1.09000 * 109.58052 * 246.19939 * 11 10 8 38 38 H 1.08995 * 109.58699 * 6.62138 * 11 10 8 39 39 H 1.09003 * 109.63253 * 294.86246 * 12 11 10 40 40 H 1.08996 * 109.45752 * 174.74562 * 12 11 10 41 41 H 1.08996 * 109.44694 * 58.52287 * 13 12 11 42 42 H 1.09002 * 109.47470 * 55.06719 * 14 13 12 43 43 H 1.08999 * 109.47237 * 175.06818 * 14 13 12 44 44 H 1.09004 * 109.47357 * 300.00387 * 15 14 13 45 45 H 1.08999 * 109.46947 * 59.99879 * 15 14 13 46 46 H 0.97001 * 119.99189 * 0.02562 * 16 15 14 47 47 H 0.97003 * 119.99900 * 179.97438 * 20 19 17 48 48 H 1.08997 * 109.49431 * 301.40868 * 25 13 12 49 49 H 1.08999 * 109.52034 * 181.33388 * 25 13 12 50 50 H 1.08994 * 109.58707 * 353.37218 * 26 10 8 51 51 H 1.09001 * 109.58947 * 113.66077 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2102 2.2095 -1.0770 5 7 2.6640 3.3975 -0.6510 6 6 2.7816 3.3725 0.6485 7 6 3.2632 4.5121 1.5089 8 6 4.6177 4.9661 1.0292 9 8 5.1404 4.4185 0.0816 10 7 5.2457 5.9846 1.6494 11 6 4.6227 6.6619 2.7948 12 6 5.6139 6.6489 3.9684 13 6 6.9384 7.2684 3.5169 14 6 7.9170 7.2922 4.6927 15 6 7.3829 8.2244 5.7820 16 7 8.3196 8.2468 6.9082 17 6 8.0505 9.0177 8.0075 18 1 7.1474 9.6089 8.0444 19 6 8.9378 9.0385 9.0747 20 7 10.0381 8.3176 9.0299 21 14 8.5702 10.0895 10.5746 22 1 7.7930 9.2936 11.5583 23 1 9.8455 10.5323 11.1933 24 1 7.7800 11.2781 10.1647 25 6 7.5306 6.4358 2.3774 26 6 6.5639 6.4425 1.1895 27 7 2.3946 2.1582 1.0949 28 1 2.3765 1.8635 2.0189 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.0173 1.9347 -2.1036 35 1 3.3371 4.1796 2.5444 36 1 2.5579 5.3405 1.4428 37 1 4.3845 7.6909 2.5255 38 1 3.7111 6.1360 3.0787 39 1 5.7842 5.6222 4.2926 40 1 5.2045 7.2284 4.7959 41 1 6.7631 8.2865 3.1696 42 1 8.0244 6.2855 5.0966 43 1 8.8874 7.6517 4.3505 44 1 7.2755 9.2312 5.3781 45 1 6.4125 7.8649 6.1242 46 1 9.1309 7.7161 6.8747 47 1 10.6584 8.3324 9.7755 48 1 7.6829 5.4112 2.7166 49 1 8.4855 6.8636 2.0720 50 1 6.9336 5.7717 0.4140 51 1 6.4807 7.4530 0.7895 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753568045.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:40 Heat of formation + Delta-G solvation = 12.439508 kcal Electronic energy + Delta-G solvation = -28098.155838 eV Core-core repulsion = 24225.793278 eV Total energy + Delta-G solvation = -3872.362560 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -42.40870 -40.26932 -37.92902 -35.31799 -34.58552 -33.62293 -32.76523 -32.10302 -31.01994 -30.80056 -28.48267 -27.32764 -25.01600 -23.81521 -23.43544 -22.98781 -21.64080 -21.19191 -20.74057 -20.20812 -19.01484 -17.78085 -17.33054 -16.98949 -16.00941 -15.79110 -15.26878 -14.93262 -14.77425 -14.70525 -14.53071 -14.15991 -13.92702 -13.88290 -13.78832 -13.58764 -13.36449 -13.02782 -12.95824 -12.75156 -12.66321 -12.38441 -12.20581 -12.02608 -11.64981 -11.35534 -11.28220 -11.15891 -11.00224 -10.80189 -10.61446 -10.32375 -10.22584 -10.21157 -10.08301 -9.94345 -9.88892 -9.67570 -8.86755 -8.74708 -8.48568 -6.91472 -5.76919 -3.05442 1.69090 2.48221 2.54977 2.87058 3.08245 3.42327 3.47296 3.49325 3.98253 4.33519 4.38578 4.51026 4.56567 4.58063 4.64391 4.80320 4.82790 4.83767 4.95188 4.99921 5.09633 5.15021 5.16860 5.24480 5.30857 5.39061 5.41008 5.50719 5.54487 5.63051 5.69221 5.70180 5.74018 5.81816 5.85524 5.99179 6.02690 6.03352 6.17696 6.35639 6.38224 6.43506 6.45752 6.51423 6.86582 6.91717 7.03966 7.24173 7.68785 7.89430 8.04719 8.42313 9.53035 10.12592 10.46597 11.46080 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.020349 B = 0.001756 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.662927 B =15941.364161 C =16738.794315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.047 4.047 3 C -0.023 4.023 4 C -0.022 4.022 5 N -0.458 5.458 6 C 0.218 3.782 7 C -0.054 4.054 8 C 0.520 3.480 9 O -0.518 6.518 10 N -0.612 5.612 11 C 0.104 3.896 12 C -0.132 4.132 13 C -0.082 4.082 14 C -0.121 4.121 15 C 0.153 3.847 16 N -0.735 5.735 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.129 4.129 26 C 0.114 3.886 27 N -0.562 5.562 28 H 0.416 0.584 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.167 0.833 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.016 0.984 45 H 0.019 0.981 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.065 0.935 49 H 0.076 0.924 50 H 0.090 0.910 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.849 -13.925 -18.752 30.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 C -0.139 4.139 4 C -0.170 4.170 5 N -0.177 5.177 6 C -0.046 4.046 7 C -0.096 4.096 8 C 0.306 3.694 9 O -0.393 6.393 10 N -0.347 5.347 11 C -0.018 4.018 12 C -0.170 4.170 13 C -0.101 4.101 14 C -0.159 4.159 15 C 0.025 3.975 16 N -0.379 5.379 17 C -0.371 4.371 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.167 4.167 26 C -0.008 4.008 27 N -0.166 5.166 28 H 0.253 0.747 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.185 0.815 35 H 0.125 0.875 36 H 0.137 0.863 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.034 0.966 45 H 0.037 0.963 46 H 0.216 0.784 47 H 0.065 0.935 48 H 0.084 0.916 49 H 0.094 0.906 50 H 0.108 0.892 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.462 -13.417 -19.723 30.164 hybrid contribution -0.027 -0.361 2.027 2.060 sum -18.489 -13.778 -17.696 29.066 Atomic orbital electron populations 1.21777 0.94399 1.01935 1.02416 1.19986 0.96026 0.89088 1.03469 1.21237 1.08980 0.96388 0.87262 1.22105 1.05942 0.90385 0.98614 1.70229 1.16524 1.23121 1.07790 1.22221 1.04371 0.86841 0.91153 1.19969 0.96133 0.95387 0.98075 1.20060 0.86479 0.79761 0.83103 1.90759 1.66555 1.55087 1.26901 1.48101 1.19951 1.34084 1.32522 1.21954 0.96093 0.97925 0.85851 1.22133 0.95493 1.02180 0.97233 1.21078 0.94767 0.99117 0.95167 1.21760 0.98387 1.00665 0.95069 1.20699 0.93252 0.95660 0.87866 1.42393 1.24259 1.55287 1.15948 1.19240 1.04277 1.19299 0.94247 0.91226 1.24750 0.97082 1.00575 0.98717 1.69664 1.12122 1.44285 1.32196 0.86188 0.76947 0.79890 0.83162 1.21761 1.21758 1.20768 1.21979 0.98429 1.01105 0.95171 1.21601 0.81866 1.00144 0.97205 1.43080 1.51458 1.12383 1.09691 0.74651 0.92898 0.92036 0.92024 0.89403 0.91273 0.81531 0.87491 0.86310 0.90854 0.90053 0.91488 0.89669 0.90928 0.92102 0.91902 0.96626 0.96342 0.78369 0.93539 0.91610 0.90561 0.89187 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.89 37.16 0.37 -0.30 16 2 C -0.05 -0.25 6.49 -27.88 -0.18 -0.43 16 3 C -0.02 -0.20 6.49 -81.60 -0.53 -0.73 16 4 C -0.02 -0.24 11.79 -17.82 -0.21 -0.45 16 5 N -0.46 -6.17 10.60 -10.82 -0.11 -6.29 16 6 C 0.22 2.34 6.95 -155.42 -1.08 1.26 16 7 C -0.05 -0.44 4.67 -29.03 -0.14 -0.58 16 8 C 0.52 6.10 7.69 -10.98 -0.08 6.02 16 9 O -0.52 -8.36 14.97 5.55 0.08 -8.28 16 10 N -0.61 -6.23 2.97 -172.53 -0.51 -6.74 16 11 C 0.10 0.83 6.37 -3.48 -0.02 0.81 16 12 C -0.13 -1.33 5.16 -26.39 -0.14 -1.46 16 13 C -0.08 -0.95 2.15 -90.58 -0.19 -1.14 16 14 C -0.12 -1.85 4.80 -26.74 -0.13 -1.98 16 15 C 0.15 2.96 6.02 -4.04 -0.02 2.93 16 16 N -0.73 -18.65 5.60 -59.91 -0.34 -18.99 16 17 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 19 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 20 N -0.93 -28.36 13.06 55.49 0.72 -27.63 16 21 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C -0.13 -1.38 5.36 -26.63 -0.14 -1.52 16 26 C 0.11 1.21 6.43 -3.73 -0.02 1.18 16 27 N -0.56 -4.58 6.15 -6.54 -0.04 -4.62 16 28 H 0.42 2.04 8.96 -40.82 -0.37 1.68 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.30 8.14 -51.94 -0.42 -0.12 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.17 1.47 8.06 -52.48 -0.42 1.05 16 35 H 0.11 0.55 7.70 -51.93 -0.40 0.15 16 36 H 0.12 0.75 7.93 -51.93 -0.41 0.34 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.45 5.94 -51.93 -0.31 0.14 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.89 6.50 -51.93 -0.34 0.56 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.02 0.35 6.53 -51.93 -0.34 0.02 16 46 H 0.38 10.26 7.67 -40.82 -0.31 9.95 16 47 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.09 1.08 7.00 -51.93 -0.36 0.72 16 51 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 406.40 15.07 6.12 6.12 Total: -1.00 -36.88 406.40 -10.59 -47.48 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -8.73 Total: 5.43 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -2.77 Total: -3.80 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: -0.28 Total: -64.27 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.08 Total: -8.28 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.88 -10.59 -47.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753568045.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.916 kcal (2) G-P(sol) polarization free energy of solvation -36.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds