Wall clock time and date at job start Tue Mar 31 2020 18:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46834 * 2 1 4 4 C 1.34666 * 126.59507 * 275.04617 * 3 2 1 5 5 N 1.34120 * 108.02377 * 179.74557 * 4 3 2 6 6 C 1.30503 * 109.25419 * 0.36969 * 5 4 3 7 7 C 1.50700 * 125.64966 * 179.89802 * 6 5 4 8 8 C 1.50702 * 109.46869 * 304.68678 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46931 * 120.63086 * 0.02562 * 10 8 7 12 12 C 1.53622 * 108.54424 * 126.36867 * 11 10 8 13 13 C 1.53036 * 109.24613 * 54.85288 * 12 11 10 14 14 C 1.52995 * 109.46103 * 178.49326 * 13 12 11 15 15 C 1.52997 * 109.47264 * 295.06762 * 14 13 12 16 16 N 1.46499 * 109.47690 * 179.97438 * 15 14 13 17 17 C 1.36938 * 120.00375 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99743 * 0.02562 * 17 16 15 19 19 C 1.38809 * 119.99976 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00061 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99896 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47068 * 90.00405 * 21 19 17 23 23 H 1.48500 * 109.46966 * 210.00135 * 21 19 17 24 24 H 1.48499 * 109.47470 * 330.00230 * 21 19 17 25 25 C 1.53046 * 109.53689 * 298.51382 * 13 12 11 26 26 C 1.46925 * 120.62933 * 180.27723 * 10 8 7 27 27 N 1.35041 * 108.70158 * 359.62956 * 6 5 4 28 28 H 0.96999 * 126.40013 * 180.25199 * 27 6 5 29 29 H 1.09006 * 109.47043 * 299.99028 * 1 2 3 30 30 H 1.08989 * 109.47804 * 59.99638 * 1 2 3 31 31 H 1.09001 * 109.46968 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46785 * 240.00222 * 2 1 3 33 33 H 1.09001 * 109.47143 * 120.00373 * 2 1 3 34 34 H 1.08006 * 125.98558 * 359.97438 * 4 3 2 35 35 H 1.09004 * 109.47210 * 184.68971 * 7 6 5 36 36 H 1.08994 * 109.47551 * 64.68624 * 7 6 5 37 37 H 1.09000 * 109.58052 * 246.19939 * 11 10 8 38 38 H 1.08995 * 109.58699 * 6.62138 * 11 10 8 39 39 H 1.09003 * 109.63253 * 294.86246 * 12 11 10 40 40 H 1.08996 * 109.45752 * 174.74562 * 12 11 10 41 41 H 1.08996 * 109.44694 * 58.52287 * 13 12 11 42 42 H 1.09002 * 109.47470 * 55.06719 * 14 13 12 43 43 H 1.08999 * 109.47237 * 175.06818 * 14 13 12 44 44 H 1.09004 * 109.47357 * 300.00387 * 15 14 13 45 45 H 1.08999 * 109.46947 * 59.99879 * 15 14 13 46 46 H 0.97001 * 119.99189 * 0.02562 * 16 15 14 47 47 H 0.97003 * 119.99900 * 179.97438 * 20 19 17 48 48 H 1.08997 * 109.49431 * 301.40868 * 25 13 12 49 49 H 1.08999 * 109.52034 * 181.33388 * 25 13 12 50 50 H 1.08994 * 109.58707 * 353.37218 * 26 10 8 51 51 H 1.09001 * 109.58947 * 113.66077 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2102 2.2095 -1.0770 5 7 2.6640 3.3975 -0.6510 6 6 2.7816 3.3725 0.6485 7 6 3.2632 4.5121 1.5089 8 6 4.6177 4.9661 1.0292 9 8 5.1404 4.4185 0.0816 10 7 5.2457 5.9846 1.6494 11 6 4.6227 6.6619 2.7948 12 6 5.6139 6.6489 3.9684 13 6 6.9384 7.2684 3.5169 14 6 7.9170 7.2922 4.6927 15 6 7.3829 8.2244 5.7820 16 7 8.3196 8.2468 6.9082 17 6 8.0505 9.0177 8.0075 18 1 7.1474 9.6089 8.0444 19 6 8.9378 9.0385 9.0747 20 7 10.0381 8.3176 9.0299 21 14 8.5702 10.0895 10.5746 22 1 7.7930 9.2936 11.5583 23 1 9.8455 10.5323 11.1933 24 1 7.7800 11.2781 10.1647 25 6 7.5306 6.4358 2.3774 26 6 6.5639 6.4425 1.1895 27 7 2.3946 2.1582 1.0949 28 1 2.3765 1.8635 2.0189 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.0173 1.9347 -2.1036 35 1 3.3371 4.1796 2.5444 36 1 2.5579 5.3405 1.4428 37 1 4.3845 7.6909 2.5255 38 1 3.7111 6.1360 3.0787 39 1 5.7842 5.6222 4.2926 40 1 5.2045 7.2284 4.7959 41 1 6.7631 8.2865 3.1696 42 1 8.0244 6.2855 5.0966 43 1 8.8874 7.6517 4.3505 44 1 7.2755 9.2312 5.3781 45 1 6.4125 7.8649 6.1242 46 1 9.1309 7.7161 6.8747 47 1 10.6584 8.3324 9.7755 48 1 7.6829 5.4112 2.7166 49 1 8.4855 6.8636 2.0720 50 1 6.9336 5.7717 0.4140 51 1 6.4807 7.4530 0.7895 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753568045.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:38 Heat of formation + Delta-G solvation = -11.736520 kcal Electronic energy + Delta-G solvation = -28099.204190 eV Core-core repulsion = 24225.793278 eV Total energy + Delta-G solvation = -3873.410911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 4.23 seconds Orbital eigenvalues (eV) -43.10525 -41.12782 -38.93550 -36.84606 -35.11784 -35.02210 -33.57250 -33.12234 -32.47606 -31.53095 -29.85712 -28.06916 -26.45063 -24.71415 -24.24790 -24.17949 -22.77062 -21.98961 -21.69728 -21.13168 -19.82414 -19.11231 -18.47503 -18.04902 -16.86476 -16.65109 -16.57763 -15.96267 -15.81903 -15.48742 -15.42228 -15.28948 -15.18536 -14.81803 -14.76193 -14.46717 -14.36185 -14.27247 -13.91856 -13.73895 -13.26042 -13.12970 -13.09332 -13.00587 -12.82473 -12.47793 -12.44120 -12.28739 -12.14753 -12.07800 -12.02659 -11.93958 -11.60413 -11.34109 -11.16581 -10.97089 -10.86999 -10.85157 -10.76351 -9.60594 -9.18033 -8.97367 -7.94316 -5.23121 1.01256 1.48143 1.50008 1.58562 1.65046 1.83756 2.18301 2.34745 2.57151 3.31529 3.39628 3.63263 3.71816 3.83957 3.89690 3.95703 4.04097 4.14403 4.17044 4.24701 4.35538 4.38703 4.43155 4.45026 4.51942 4.58612 4.62886 4.67643 4.70903 4.76083 4.82644 4.87582 4.94366 4.95557 5.01255 5.06714 5.08918 5.13234 5.26026 5.32744 5.35118 5.40637 5.43555 5.51122 5.58918 5.63983 5.80995 6.28464 6.39987 6.53292 7.17865 7.21165 7.33979 8.12345 8.33712 9.29515 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.020349 B = 0.001756 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.662927 B =15941.364161 C =16738.794315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.045 4.045 3 C -0.009 4.009 4 C -0.060 4.060 5 N -0.507 5.507 6 C 0.204 3.796 7 C -0.049 4.049 8 C 0.515 3.485 9 O -0.572 6.572 10 N -0.609 5.609 11 C 0.106 3.894 12 C -0.130 4.130 13 C -0.074 4.074 14 C -0.109 4.109 15 C 0.151 3.849 16 N -0.751 5.751 17 C -0.245 4.245 18 H 0.078 0.922 19 C -0.079 4.079 20 N -0.972 5.972 21 Si 0.975 3.025 22 H -0.286 1.286 23 H -0.297 1.297 24 H -0.268 1.268 25 C -0.120 4.120 26 C 0.115 3.885 27 N -0.553 5.553 28 H 0.432 0.568 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.173 0.827 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.062 0.938 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.018 0.982 45 H 0.031 0.969 46 H 0.371 0.629 47 H 0.250 0.750 48 H 0.054 0.946 49 H 0.079 0.921 50 H 0.071 0.929 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.190 -13.903 -17.915 31.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 C -0.126 4.126 4 C -0.207 4.207 5 N -0.227 5.227 6 C -0.061 4.061 7 C -0.090 4.090 8 C 0.303 3.697 9 O -0.451 6.451 10 N -0.342 5.342 11 C -0.016 4.016 12 C -0.168 4.168 13 C -0.094 4.094 14 C -0.147 4.147 15 C 0.025 3.975 16 N -0.394 5.394 17 C -0.377 4.377 18 H 0.096 0.904 19 C -0.271 4.271 20 N -0.623 5.623 21 Si 0.804 3.196 22 H -0.213 1.213 23 H -0.224 1.224 24 H -0.193 1.193 25 C -0.158 4.158 26 C -0.007 4.007 27 N -0.158 5.158 28 H 0.272 0.728 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.190 0.810 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.106 0.894 38 H 0.132 0.868 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.036 0.964 45 H 0.049 0.951 46 H 0.202 0.798 47 H 0.059 0.941 48 H 0.073 0.927 49 H 0.097 0.903 50 H 0.089 0.911 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.856 -13.375 -18.877 31.148 hybrid contribution 0.695 -0.386 1.706 1.883 sum -20.161 -13.760 -17.170 29.844 Atomic orbital electron populations 1.21740 0.93625 1.02808 1.01937 1.20111 0.96538 0.87088 1.04585 1.21674 1.07011 0.97263 0.86661 1.22406 1.07708 0.90732 0.99892 1.70144 1.18077 1.24762 1.09698 1.22595 1.04459 0.88128 0.90904 1.20112 0.94146 0.95505 0.99234 1.20688 0.87435 0.79257 0.82359 1.90740 1.68114 1.56856 1.29363 1.48200 1.19601 1.33683 1.32751 1.22134 0.96354 0.99109 0.83958 1.22093 0.94966 1.01638 0.98102 1.21009 0.94728 0.99984 0.93632 1.21629 0.98867 0.98948 0.95211 1.20905 0.92699 0.96683 0.87215 1.42678 1.24869 1.54779 1.17035 1.19686 1.04177 1.18876 0.94942 0.90393 1.25608 0.97212 1.02403 1.01896 1.69828 1.13260 1.46260 1.32935 0.85118 0.76502 0.78588 0.79430 1.21297 1.22357 1.19258 1.21872 0.98712 1.00285 0.94941 1.21524 0.82301 1.00340 0.96544 1.43057 1.50605 1.11632 1.10495 0.72752 0.93118 0.92788 0.90459 0.88648 0.89778 0.81000 0.83868 0.83987 0.89418 0.86761 0.91968 0.89672 0.90107 0.92990 0.92901 0.96411 0.95137 0.79758 0.94085 0.92709 0.90273 0.91080 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.89 71.98 0.71 -0.32 16 2 C -0.04 -0.39 6.49 29.85 0.19 -0.20 16 3 C -0.01 -0.15 6.49 40.95 0.27 0.11 16 4 C -0.06 -1.33 11.79 83.52 0.98 -0.35 16 5 N -0.51 -13.87 10.60 -188.13 -1.99 -15.87 16 6 C 0.20 4.16 6.95 138.13 0.96 5.12 16 7 C -0.05 -0.68 4.67 29.10 0.14 -0.55 16 8 C 0.51 11.48 7.69 87.66 0.67 12.15 16 9 O -0.57 -18.80 14.97 -3.04 -0.05 -18.85 16 10 N -0.61 -11.24 2.97 -818.14 -2.43 -13.67 16 11 C 0.11 1.31 6.37 86.51 0.55 1.87 16 12 C -0.13 -2.25 5.16 30.82 0.16 -2.10 16 13 C -0.07 -1.59 2.15 -10.77 -0.02 -1.61 16 14 C -0.11 -3.24 4.80 30.59 0.15 -3.09 16 15 C 0.15 5.67 6.02 86.38 0.52 6.19 16 16 N -0.75 -38.06 5.60 -343.46 -1.92 -39.99 16 17 C -0.24 -13.61 9.99 84.03 0.84 -12.77 16 18 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 19 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 20 N -0.97 -59.73 13.06 21.65 0.28 -59.45 16 21 Si 0.97 45.70 29.55 68.60 2.03 47.73 16 22 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 25 C -0.12 -2.47 5.36 30.66 0.16 -2.30 16 26 C 0.12 2.34 6.43 86.35 0.55 2.90 16 27 N -0.55 -8.12 6.15 -174.60 -1.07 -9.19 16 28 H 0.43 3.17 8.96 -92.71 -0.83 2.34 16 29 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 35 H 0.14 0.89 7.70 -2.38 -0.02 0.87 16 36 H 0.14 1.32 7.93 -2.39 -0.02 1.30 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 38 H 0.11 0.71 5.94 -2.39 -0.01 0.69 16 39 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 1.52 6.50 -2.39 -0.02 1.51 16 41 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.02 0.67 8.14 -2.38 -0.02 0.66 16 45 H 0.03 1.10 6.53 -2.39 -0.02 1.08 16 46 H 0.37 20.21 7.67 -92.71 -0.71 19.50 16 47 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 48 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.07 1.75 7.00 -2.39 -0.02 1.73 16 51 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -82.12 406.40 1.54 -80.58 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: -0.61 Total: 27.75 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 7.31 Total: 0.96 kcal Atomic # 7 Polarization: -131.02 SS G_CDS: -7.14 Total: -138.16 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.05 Total: -18.85 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -82.12 1.54 -80.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753568045.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.839 kcal (2) G-P(sol) polarization free energy of solvation -82.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.23 seconds