Wall clock time and date at job start Tue Mar 31 2020 19:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47341 * 2 1 4 4 C 1.50692 * 109.46974 * 180.02562 * 3 2 1 5 5 N 1.30455 * 125.98969 * 270.14051 * 4 3 2 6 6 N 1.39929 * 108.89777 * 180.26237 * 5 4 3 7 7 H 0.97000 * 125.75513 * 179.72918 * 6 5 4 8 8 C 1.34257 * 108.49471 * 359.75302 * 6 5 4 9 9 C 1.38043 * 107.41454 * 359.97438 * 8 6 5 10 10 C 1.47435 * 126.41321 * 179.97438 * 9 8 6 11 11 O 1.21604 * 119.99945 * 230.50617 * 10 9 8 12 12 N 1.34770 * 120.00120 * 50.50274 * 10 9 8 13 13 C 1.46929 * 120.63348 * 175.64839 * 12 10 9 14 14 C 1.53196 * 108.77257 * 233.58861 * 13 12 10 15 15 C 1.53039 * 109.31169 * 305.35791 * 14 13 12 16 16 C 1.52995 * 109.45914 * 181.38768 * 15 14 13 17 17 C 1.52996 * 109.47230 * 64.93389 * 16 15 14 18 18 N 1.46496 * 109.47527 * 179.97438 * 17 16 15 19 19 C 1.36936 * 120.00197 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00254 * 359.97438 * 19 18 17 21 21 C 1.38816 * 120.00045 * 180.02562 * 19 18 17 22 22 N 1.31614 * 119.99859 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00048 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47292 * 59.99897 * 23 21 19 25 25 H 1.48498 * 109.47217 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47136 * 299.99886 * 23 21 19 27 27 C 1.53040 * 109.53748 * 61.37109 * 15 14 13 28 28 C 1.46934 * 120.63080 * 355.62266 * 12 10 9 29 29 H 1.08995 * 109.47362 * 59.99788 * 1 2 3 30 30 H 1.08998 * 109.47494 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46861 * 300.00386 * 1 2 3 32 32 H 1.08996 * 109.46963 * 239.99759 * 2 1 3 33 33 H 1.09006 * 109.46894 * 120.00096 * 2 1 3 34 34 H 1.08996 * 109.47288 * 59.99959 * 3 2 1 35 35 H 1.08999 * 109.46577 * 299.99829 * 3 2 1 36 36 H 1.08003 * 126.29497 * 180.02562 * 8 6 5 37 37 H 1.08997 * 109.58211 * 353.37124 * 13 12 10 38 38 H 1.08995 * 109.58539 * 113.79653 * 13 12 10 39 39 H 1.08999 * 109.49887 * 65.31109 * 14 13 12 40 40 H 1.09000 * 109.49019 * 185.40865 * 14 13 12 41 41 H 1.08995 * 109.46017 * 301.34825 * 15 14 13 42 42 H 1.09004 * 109.47321 * 184.93290 * 16 15 14 43 43 H 1.09002 * 109.47547 * 304.93452 * 16 15 14 44 44 H 1.09008 * 109.47363 * 300.00115 * 17 16 15 45 45 H 1.09004 * 109.47317 * 59.99591 * 17 16 15 46 46 H 0.97004 * 119.99941 * 0.02562 * 18 17 16 47 47 H 0.97003 * 120.00106 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.49845 * 178.68486 * 27 15 14 49 49 H 1.08998 * 109.52588 * 58.59883 * 27 15 14 50 50 H 1.09000 * 109.58790 * 246.20292 * 28 12 10 51 51 H 1.08997 * 109.58468 * 6.48407 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3140 1.4396 1.0546 6 7 5.6513 1.4466 0.6428 7 1 6.4247 1.4501 1.2283 8 6 5.6836 1.4484 -0.6994 9 6 4.3768 1.4419 -1.1441 10 6 3.9305 1.4417 -2.5493 11 8 3.1037 2.2504 -2.9248 12 7 4.4390 0.5452 -3.4177 13 6 3.9361 0.4697 -4.7962 14 6 3.5177 -0.9745 -5.0899 15 6 4.6921 -1.9111 -4.7972 16 6 4.2890 -3.3508 -5.1223 17 6 4.0301 -3.4810 -6.6246 18 7 3.6448 -4.8596 -6.9361 19 6 3.3616 -5.2163 -8.2275 20 1 3.4218 -4.4812 -9.0164 21 6 2.9959 -6.5226 -8.5225 22 7 2.9210 -7.4181 -7.5609 23 14 2.6103 -7.0093 -10.2842 24 1 3.8025 -6.7693 -11.1364 25 1 2.2486 -8.4487 -10.3322 26 1 1.4725 -6.1966 -10.7846 27 6 5.0714 -1.8096 -3.3180 28 6 5.5074 -0.3749 -3.0041 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9562 -0.8900 36 1 6.5692 1.4530 -1.3176 37 1 3.0755 1.1293 -4.9077 38 1 4.7220 0.7706 -5.4888 39 1 2.6713 -1.2437 -4.4580 40 1 3.2329 -1.0645 -6.1382 41 1 5.5460 -1.6257 -5.4115 42 1 5.0928 -4.0275 -4.8322 43 1 3.3826 -3.6071 -4.5739 44 1 3.2262 -2.8043 -6.9148 45 1 4.9365 -3.2247 -7.1732 46 1 3.5895 -5.5197 -6.2274 47 1 2.6652 -8.3308 -7.7670 48 1 5.8925 -2.4941 -3.1052 49 1 4.2107 -2.0712 -2.7025 50 1 6.4214 -0.1429 -3.5508 51 1 5.6853 -0.2707 -1.9339 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753570520.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:13 Heat of formation + Delta-G solvation = 25.032563 kcal Electronic energy + Delta-G solvation = -29137.361714 eV Core-core repulsion = 25265.545230 eV Total energy + Delta-G solvation = -3871.816484 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.87154 -39.89925 -37.80569 -35.57972 -35.24661 -33.55719 -31.94717 -31.71488 -31.19017 -30.17973 -28.34656 -27.37297 -25.26213 -23.78624 -23.35479 -22.40615 -22.10865 -21.09971 -20.62226 -19.95508 -19.39784 -18.02807 -17.10049 -16.84767 -15.95016 -15.70809 -15.25964 -14.94247 -14.75282 -14.70349 -14.55235 -14.09351 -13.94770 -13.82875 -13.70620 -13.38427 -13.23035 -13.00850 -12.75252 -12.67924 -12.31770 -12.16927 -11.78269 -11.50249 -11.37734 -11.25132 -11.23324 -11.13772 -10.98111 -10.85210 -10.73707 -10.57316 -10.31908 -10.17557 -10.04085 -9.92641 -9.81610 -9.64649 -9.07611 -8.83311 -8.70926 -6.88607 -5.74074 -3.02392 1.23702 1.92972 2.30403 2.71549 3.04628 3.45604 3.49667 3.50913 4.08668 4.26323 4.57979 4.58606 4.66845 4.70622 4.80262 4.86726 4.89731 4.99030 5.04614 5.09163 5.18940 5.25672 5.31305 5.42312 5.50744 5.55586 5.57297 5.62633 5.66072 5.70699 5.74405 5.82628 5.85761 5.90588 5.98885 6.01237 6.08293 6.12810 6.14858 6.22331 6.35592 6.41223 6.48762 6.50783 6.71060 6.90076 6.95101 7.16754 7.29922 7.71492 8.07973 8.45368 9.55948 10.15496 10.49616 11.49003 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.002241 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.631316 B =12489.319806 C =13015.787209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.049 4.049 4 C 0.132 3.868 5 N -0.294 5.294 6 N -0.463 5.463 7 H 0.444 0.556 8 C 0.096 3.904 9 C -0.275 4.275 10 C 0.595 3.405 11 O -0.539 6.539 12 N -0.604 5.604 13 C 0.113 3.887 14 C -0.131 4.131 15 C -0.082 4.082 16 C -0.120 4.120 17 C 0.153 3.847 18 N -0.735 5.735 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.129 4.129 28 C 0.102 3.898 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.186 0.814 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.020 0.980 45 H 0.015 0.985 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.074 0.926 49 H 0.067 0.933 50 H 0.069 0.931 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.708 19.912 18.673 28.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.088 4.088 4 C -0.036 4.036 5 N -0.116 5.116 6 N -0.168 5.168 7 H 0.288 0.712 8 C -0.056 4.056 9 C -0.291 4.291 10 C 0.383 3.617 11 O -0.417 6.417 12 N -0.337 5.337 13 C -0.009 4.009 14 C -0.169 4.169 15 C -0.101 4.101 16 C -0.158 4.158 17 C 0.025 3.975 18 N -0.379 5.379 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.211 4.211 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.167 4.167 28 C -0.021 4.021 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.203 0.797 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.038 0.962 45 H 0.033 0.967 46 H 0.216 0.784 47 H 0.065 0.935 48 H 0.093 0.907 49 H 0.086 0.914 50 H 0.087 0.913 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.271 20.347 19.555 28.909 hybrid contribution 0.497 -0.709 -1.348 1.602 sum 6.768 19.639 18.207 27.622 Atomic orbital electron populations 1.21755 0.95048 1.02065 1.02009 1.21437 0.96283 0.95171 1.02446 1.20235 0.85507 0.98635 1.04435 1.22373 0.96914 0.95705 0.88579 1.77156 0.86233 1.25911 1.22328 1.46081 1.07796 1.57530 1.05364 0.71166 1.23077 0.98739 0.98236 0.85575 1.20208 0.92436 1.21820 0.94596 1.17316 0.80647 0.80140 0.83582 1.90764 1.33962 1.38483 1.78449 1.48015 1.38263 1.35260 1.12145 1.21682 1.00156 0.98045 0.81009 1.22051 0.98494 0.93310 1.03049 1.21078 0.98028 0.95814 0.95157 1.21754 1.01379 0.94606 0.98089 1.20697 0.96657 0.88209 0.91919 1.42384 1.82567 1.05694 1.07235 1.19201 1.38198 0.94039 0.85560 0.91284 1.24745 1.02696 0.96187 0.97508 1.69650 1.54867 1.03033 1.30848 0.86263 0.78157 0.77284 0.84472 1.21288 1.21692 1.21259 1.21971 1.02046 0.95298 0.97401 1.21940 0.89716 0.89638 1.00812 0.92333 0.92350 0.92661 0.91738 0.91808 0.90029 0.88619 0.79707 0.89012 0.91466 0.91475 0.89731 0.91037 0.92014 0.92055 0.96237 0.96684 0.78382 0.93498 0.90695 0.91431 0.91289 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.11 -1.07 5.92 -26.73 -0.16 -1.23 16 3 C -0.05 -0.48 5.61 -27.89 -0.16 -0.64 16 4 C 0.13 1.42 6.52 -82.02 -0.53 0.88 16 5 N -0.29 -2.97 12.63 33.89 0.43 -2.54 16 6 N -0.46 -3.02 7.29 30.85 0.22 -2.80 16 7 H 0.44 1.29 8.96 -182.73 -1.64 -0.35 16 8 C 0.10 0.64 9.66 -16.56 -0.16 0.48 16 9 C -0.28 -2.81 5.14 -105.06 -0.54 -3.35 16 10 C 0.60 7.19 7.35 -12.52 -0.09 7.10 16 11 O -0.54 -8.31 15.66 5.27 0.08 -8.23 16 12 N -0.60 -6.26 2.97 -174.03 -0.52 -6.78 16 13 C 0.11 1.23 6.42 -3.71 -0.02 1.20 16 14 C -0.13 -1.54 5.14 -26.61 -0.14 -1.68 16 15 C -0.08 -0.95 2.15 -90.58 -0.19 -1.15 16 16 C -0.12 -1.86 4.80 -26.74 -0.13 -1.99 16 17 C 0.15 3.03 6.01 -4.05 -0.02 3.00 16 18 N -0.73 -18.92 5.60 -59.91 -0.34 -19.26 16 19 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 20 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 21 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 22 N -0.94 -28.63 13.06 55.49 0.72 -27.90 16 23 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 C -0.13 -1.24 5.36 -26.61 -0.14 -1.38 16 28 C 0.10 0.81 5.91 -3.71 -0.02 0.79 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.10 1.06 7.20 -51.93 -0.37 0.69 16 36 H 0.19 0.57 7.63 -52.48 -0.40 0.17 16 37 H 0.09 1.11 7.03 -51.93 -0.37 0.74 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 1.06 6.50 -51.93 -0.34 0.72 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.02 0.39 6.53 -51.92 -0.34 0.05 16 45 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.38 10.35 7.67 -40.82 -0.31 10.03 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.08 0.57 4.58 -51.93 -0.24 0.33 16 LS Contribution 403.85 15.07 6.09 6.09 Total: -1.00 -35.33 403.85 -10.41 -45.74 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -9.89 Total: 4.44 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -2.19 Total: -6.34 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: 0.52 Total: -59.29 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.08 Total: -8.23 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.33 -10.41 -45.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753570520.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.777 kcal (2) G-P(sol) polarization free energy of solvation -35.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds