Wall clock time and date at job start Tue Mar 31 2020 19:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47341 * 2 1 4 4 C 1.50692 * 109.46974 * 180.02562 * 3 2 1 5 5 N 1.30455 * 125.98969 * 270.14051 * 4 3 2 6 6 N 1.39929 * 108.89777 * 180.26237 * 5 4 3 7 7 H 0.97000 * 125.75513 * 179.72918 * 6 5 4 8 8 C 1.34257 * 108.49471 * 359.75302 * 6 5 4 9 9 C 1.38043 * 107.41454 * 359.97438 * 8 6 5 10 10 C 1.47435 * 126.41321 * 179.97438 * 9 8 6 11 11 O 1.21604 * 119.99945 * 230.50617 * 10 9 8 12 12 N 1.34770 * 120.00120 * 50.50274 * 10 9 8 13 13 C 1.46929 * 120.63348 * 175.64839 * 12 10 9 14 14 C 1.53196 * 108.77257 * 233.58861 * 13 12 10 15 15 C 1.53039 * 109.31169 * 305.35791 * 14 13 12 16 16 C 1.52995 * 109.45914 * 181.38768 * 15 14 13 17 17 C 1.52996 * 109.47230 * 64.93389 * 16 15 14 18 18 N 1.46496 * 109.47527 * 179.97438 * 17 16 15 19 19 C 1.36936 * 120.00197 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00254 * 359.97438 * 19 18 17 21 21 C 1.38816 * 120.00045 * 180.02562 * 19 18 17 22 22 N 1.31614 * 119.99859 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00048 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47292 * 59.99897 * 23 21 19 25 25 H 1.48498 * 109.47217 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47136 * 299.99886 * 23 21 19 27 27 C 1.53040 * 109.53748 * 61.37109 * 15 14 13 28 28 C 1.46934 * 120.63080 * 355.62266 * 12 10 9 29 29 H 1.08995 * 109.47362 * 59.99788 * 1 2 3 30 30 H 1.08998 * 109.47494 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46861 * 300.00386 * 1 2 3 32 32 H 1.08996 * 109.46963 * 239.99759 * 2 1 3 33 33 H 1.09006 * 109.46894 * 120.00096 * 2 1 3 34 34 H 1.08996 * 109.47288 * 59.99959 * 3 2 1 35 35 H 1.08999 * 109.46577 * 299.99829 * 3 2 1 36 36 H 1.08003 * 126.29497 * 180.02562 * 8 6 5 37 37 H 1.08997 * 109.58211 * 353.37124 * 13 12 10 38 38 H 1.08995 * 109.58539 * 113.79653 * 13 12 10 39 39 H 1.08999 * 109.49887 * 65.31109 * 14 13 12 40 40 H 1.09000 * 109.49019 * 185.40865 * 14 13 12 41 41 H 1.08995 * 109.46017 * 301.34825 * 15 14 13 42 42 H 1.09004 * 109.47321 * 184.93290 * 16 15 14 43 43 H 1.09002 * 109.47547 * 304.93452 * 16 15 14 44 44 H 1.09008 * 109.47363 * 300.00115 * 17 16 15 45 45 H 1.09004 * 109.47317 * 59.99591 * 17 16 15 46 46 H 0.97004 * 119.99941 * 0.02562 * 18 17 16 47 47 H 0.97003 * 120.00106 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.49845 * 178.68486 * 27 15 14 49 49 H 1.08998 * 109.52588 * 58.59883 * 27 15 14 50 50 H 1.09000 * 109.58790 * 246.20292 * 28 12 10 51 51 H 1.08997 * 109.58468 * 6.48407 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3140 1.4396 1.0546 6 7 5.6513 1.4466 0.6428 7 1 6.4247 1.4501 1.2283 8 6 5.6836 1.4484 -0.6994 9 6 4.3768 1.4419 -1.1441 10 6 3.9305 1.4417 -2.5493 11 8 3.1037 2.2504 -2.9248 12 7 4.4390 0.5452 -3.4177 13 6 3.9361 0.4697 -4.7962 14 6 3.5177 -0.9745 -5.0899 15 6 4.6921 -1.9111 -4.7972 16 6 4.2890 -3.3508 -5.1223 17 6 4.0301 -3.4810 -6.6246 18 7 3.6448 -4.8596 -6.9361 19 6 3.3616 -5.2163 -8.2275 20 1 3.4218 -4.4812 -9.0164 21 6 2.9959 -6.5226 -8.5225 22 7 2.9210 -7.4181 -7.5609 23 14 2.6103 -7.0093 -10.2842 24 1 3.8025 -6.7693 -11.1364 25 1 2.2486 -8.4487 -10.3322 26 1 1.4725 -6.1966 -10.7846 27 6 5.0714 -1.8096 -3.3180 28 6 5.5074 -0.3749 -3.0041 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9562 -0.8900 36 1 6.5692 1.4530 -1.3176 37 1 3.0755 1.1293 -4.9077 38 1 4.7220 0.7706 -5.4888 39 1 2.6713 -1.2437 -4.4580 40 1 3.2329 -1.0645 -6.1382 41 1 5.5460 -1.6257 -5.4115 42 1 5.0928 -4.0275 -4.8322 43 1 3.3826 -3.6071 -4.5739 44 1 3.2262 -2.8043 -6.9148 45 1 4.9365 -3.2247 -7.1732 46 1 3.5895 -5.5197 -6.2274 47 1 2.6652 -8.3308 -7.7670 48 1 5.8925 -2.4941 -3.1052 49 1 4.2107 -2.0712 -2.7025 50 1 6.4214 -0.1429 -3.5508 51 1 5.6853 -0.2707 -1.9339 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753570520.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:11 Heat of formation + Delta-G solvation = 1.942821 kcal Electronic energy + Delta-G solvation = -29138.362960 eV Core-core repulsion = 25265.545230 eV Total energy + Delta-G solvation = -3872.817730 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.54176 -40.75415 -38.82907 -36.87771 -36.23325 -35.02123 -33.05337 -32.60366 -32.43296 -31.05252 -29.74199 -28.10010 -26.65808 -24.95436 -24.53711 -23.38992 -22.92850 -22.30309 -21.55194 -20.83190 -20.14088 -19.11753 -18.73039 -17.76389 -16.74655 -16.67383 -16.48208 -16.02974 -15.90456 -15.47264 -15.45471 -15.39675 -15.32219 -14.92056 -14.74278 -14.51077 -14.22383 -14.13842 -13.91111 -13.68044 -13.19411 -13.01942 -12.97430 -12.80574 -12.52141 -12.48315 -12.26126 -12.22460 -12.17231 -12.13897 -11.95737 -11.93458 -11.63499 -11.60298 -11.25634 -11.23355 -10.93502 -10.82778 -10.49413 -9.79757 -9.53074 -8.98611 -7.95153 -5.24005 0.65399 1.14851 1.47059 1.50521 1.56625 1.74137 1.94289 2.26765 2.56521 3.38302 3.40019 3.68425 3.75559 3.80995 3.84618 3.99652 4.10299 4.13475 4.17569 4.25596 4.31808 4.37197 4.40964 4.47404 4.55536 4.58496 4.60053 4.71740 4.78856 4.80544 4.80710 4.86996 4.92643 4.93888 5.03159 5.09737 5.09921 5.14728 5.22208 5.25009 5.33281 5.36879 5.39840 5.44257 5.49892 5.59880 5.64222 6.27825 6.28679 6.44079 6.57337 7.22016 7.33252 8.11210 8.33285 9.28528 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.002241 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.631316 B =12489.319806 C =13015.787209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C -0.046 4.046 4 C 0.116 3.884 5 N -0.318 5.318 6 N -0.446 5.446 7 H 0.461 0.539 8 C 0.126 3.874 9 C -0.310 4.310 10 C 0.595 3.405 11 O -0.585 6.585 12 N -0.601 5.601 13 C 0.118 3.882 14 C -0.126 4.126 15 C -0.072 4.072 16 C -0.108 4.108 17 C 0.150 3.850 18 N -0.750 5.750 19 C -0.248 4.248 20 H 0.075 0.925 21 C -0.078 4.078 22 N -0.971 5.971 23 Si 0.975 3.025 24 H -0.276 1.276 25 H -0.294 1.294 26 H -0.278 1.278 27 C -0.125 4.125 28 C 0.103 3.897 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.230 0.770 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.047 0.953 44 H 0.020 0.980 45 H 0.020 0.980 46 H 0.372 0.628 47 H 0.252 0.748 48 H 0.092 0.908 49 H 0.052 0.948 50 H 0.099 0.901 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.147 20.789 19.015 29.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.086 4.086 4 C -0.051 4.051 5 N -0.141 5.141 6 N -0.153 5.153 7 H 0.310 0.690 8 C -0.028 4.028 9 C -0.325 4.325 10 C 0.384 3.616 11 O -0.465 6.465 12 N -0.333 5.333 13 C -0.005 4.005 14 C -0.164 4.164 15 C -0.091 4.091 16 C -0.146 4.146 17 C 0.024 3.976 18 N -0.393 5.393 19 C -0.379 4.379 20 H 0.093 0.907 21 C -0.270 4.270 22 N -0.622 5.622 23 Si 0.803 3.197 24 H -0.202 1.202 25 H -0.221 1.221 26 H -0.204 1.204 27 C -0.163 4.163 28 C -0.018 4.018 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.246 0.754 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.204 0.796 47 H 0.060 0.940 48 H 0.110 0.890 49 H 0.070 0.930 50 H 0.117 0.883 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.751 21.250 19.922 30.415 hybrid contribution -0.214 -0.943 -1.421 1.719 sum 8.537 20.308 18.501 28.767 Atomic orbital electron populations 1.21749 0.94384 1.02286 1.02309 1.21354 0.96838 0.94790 1.01616 1.20157 0.85982 0.98631 1.03802 1.22449 0.97165 0.96282 0.89195 1.77091 0.87726 1.26811 1.22494 1.46113 1.07335 1.55946 1.05859 0.69036 1.23614 0.98656 0.94894 0.85607 1.20172 0.94054 1.24892 0.93363 1.17611 0.79934 0.79692 0.84389 1.90734 1.36018 1.40464 1.79307 1.48086 1.38478 1.35114 1.11619 1.21577 1.00266 0.96651 0.81982 1.21961 0.98154 0.94280 1.02002 1.21009 0.98129 0.92816 0.97172 1.21632 1.00844 0.97379 0.94721 1.20898 0.96460 0.85251 0.94974 1.42654 1.82694 1.07729 1.06214 1.19631 1.37126 0.94312 0.86865 0.90692 1.25605 1.03399 0.96341 1.01654 1.69812 1.56385 1.03110 1.32902 0.85194 0.78273 0.76517 0.79696 1.20163 1.22061 1.20434 1.21927 1.02130 0.97078 0.95153 1.22142 0.89660 0.87649 1.02391 0.93015 0.92134 0.91382 0.93444 0.91549 0.89272 0.90500 0.75383 0.90816 0.89529 0.93241 0.90743 0.89565 0.91958 0.93406 0.96190 0.96159 0.79626 0.93967 0.88955 0.92963 0.88336 0.88017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.91 71.98 0.71 -1.85 16 2 C -0.11 -2.08 5.92 30.59 0.18 -1.90 16 3 C -0.05 -0.95 5.61 29.85 0.17 -0.79 16 4 C 0.12 2.44 6.52 43.51 0.28 2.72 16 5 N -0.32 -5.97 12.63 -46.68 -0.59 -6.56 16 6 N -0.45 -4.46 7.29 -56.32 -0.41 -4.87 16 7 H 0.46 1.01 8.96 -213.43 -1.91 -0.90 16 8 C 0.13 1.22 9.66 84.28 0.81 2.04 16 9 C -0.31 -5.87 5.14 -20.15 -0.10 -5.97 16 10 C 0.59 14.05 7.35 86.67 0.64 14.69 16 11 O -0.58 -18.62 15.66 -4.04 -0.06 -18.68 16 12 N -0.60 -11.51 2.97 -822.76 -2.45 -13.96 16 13 C 0.12 2.45 6.42 86.36 0.55 3.01 16 14 C -0.13 -2.93 5.14 30.67 0.16 -2.77 16 15 C -0.07 -1.56 2.15 -10.77 -0.02 -1.59 16 16 C -0.11 -3.27 4.80 30.59 0.15 -3.13 16 17 C 0.15 5.91 6.01 86.38 0.52 6.43 16 18 N -0.75 -38.99 5.60 -343.45 -1.92 -40.91 16 19 C -0.25 -14.10 9.99 84.03 0.84 -13.26 16 20 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 21 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 22 N -0.97 -60.30 13.06 21.65 0.28 -60.02 16 23 Si 0.97 46.53 29.55 68.60 2.03 48.55 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 27 C -0.12 -2.08 5.36 30.67 0.16 -1.92 16 28 C 0.10 1.28 5.91 86.36 0.51 1.79 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.85 7.20 -2.39 -0.02 1.83 16 36 H 0.23 0.09 7.63 -2.91 -0.02 0.07 16 37 H 0.07 1.83 7.03 -2.39 -0.02 1.81 16 38 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 1.87 6.50 -2.39 -0.02 1.85 16 41 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.02 0.80 6.53 -2.38 -0.02 0.78 16 45 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 46 H 0.37 20.54 7.67 -92.71 -0.71 19.83 16 47 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 48 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.10 0.94 4.58 -2.39 -0.01 0.93 16 Total: -1.00 -78.65 403.85 1.22 -77.43 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: -1.69 Total: 25.58 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 6.03 Total: -6.57 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -5.09 Total: -126.32 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.06 Total: -18.68 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Total: -78.65 1.22 -77.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753570520.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.370 kcal (2) G-P(sol) polarization free energy of solvation -78.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds