Wall clock time and date at job start Tue Mar 31 2020 20:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47400 * 2 1 4 4 C 1.50696 * 109.47087 * 120.00077 * 2 1 3 5 5 N 1.30499 * 125.64823 * 300.03818 * 4 2 1 6 6 C 1.34135 * 109.25436 * 179.97438 * 5 4 2 7 7 C 1.34665 * 108.02266 * 359.73500 * 6 5 4 8 8 N 1.35043 * 125.65007 * 119.99876 * 4 2 1 9 9 C 1.46499 * 126.40148 * 0.03170 * 8 4 2 10 10 C 1.50700 * 109.46949 * 85.00061 * 9 8 4 11 11 O 1.21282 * 119.99898 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99866 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99624 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46996 * 175.58853 * 13 12 10 15 15 N 1.46497 * 110.06107 * 56.32563 * 14 13 12 16 16 C 1.36942 * 119.99779 * 57.74635 * 15 14 13 17 17 H 1.07998 * 119.99389 * 6.23711 * 16 15 14 18 18 C 1.38808 * 119.99883 * 186.23308 * 16 15 14 19 19 N 1.31623 * 119.99912 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99886 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47350 * 90.00106 * 20 18 16 22 22 H 1.48497 * 109.47088 * 210.00221 * 20 18 16 23 23 H 1.48502 * 109.47232 * 330.00064 * 20 18 16 24 24 C 1.53885 * 110.02885 * 294.90825 * 14 13 12 25 25 C 1.54262 * 106.59792 * 240.71767 * 24 14 13 26 26 C 1.54889 * 104.20010 * 336.38876 * 25 24 14 27 27 C 1.54264 * 110.03559 * 177.74656 * 14 13 12 28 28 H 1.08993 * 109.47401 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46659 * 300.00226 * 1 2 3 30 30 H 1.08998 * 109.46752 * 59.99634 * 1 2 3 31 31 H 1.09003 * 109.46659 * 239.99774 * 2 1 3 32 32 H 1.08996 * 109.46949 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46619 * 299.99977 * 3 2 1 34 34 H 1.08994 * 109.46834 * 59.99659 * 3 2 1 35 35 H 1.08006 * 125.98708 * 180.02562 * 6 5 4 36 36 H 1.08001 * 126.59424 * 180.27848 * 7 6 5 37 37 H 1.08997 * 109.46783 * 325.00818 * 9 8 4 38 38 H 1.09000 * 109.47588 * 205.00413 * 9 8 4 39 39 H 0.96998 * 120.00024 * 359.97438 * 12 10 9 40 40 H 1.08998 * 109.47807 * 55.58424 * 13 12 10 41 41 H 1.09000 * 109.47251 * 295.58101 * 13 12 10 42 42 H 0.96997 * 120.00087 * 237.75288 * 15 14 13 43 43 H 0.97000 * 119.99408 * 180.02562 * 19 18 16 44 44 H 1.08998 * 110.02985 * 0.02562 * 24 14 13 45 45 H 1.09003 * 110.02801 * 121.43539 * 24 14 13 46 46 H 1.08992 * 110.48801 * 95.07357 * 25 24 14 47 47 H 1.09008 * 110.48303 * 217.71652 * 25 24 14 48 48 H 1.09006 * 110.75842 * 279.63316 * 26 25 24 49 49 H 1.08999 * 110.75812 * 156.25765 * 26 25 24 50 50 H 1.08998 * 110.48711 * 261.57420 * 27 14 13 51 51 H 1.09006 * 110.48522 * 24.21356 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7854 -0.3624 2.4637 6 6 2.3925 -1.2216 3.2958 7 6 3.0354 -2.1401 2.5498 8 7 2.8120 -1.8130 1.2395 9 6 3.3190 -2.5290 0.0662 10 6 4.5913 -1.8763 -0.4094 11 8 5.0315 -0.9087 0.1745 12 7 5.2400 -2.3678 -1.4836 13 6 6.4772 -1.7336 -1.9456 14 6 7.0650 -2.5447 -3.1021 15 7 6.0778 -2.6763 -4.1764 16 6 5.5444 -1.5566 -4.7570 17 1 5.9234 -0.5799 -4.4949 18 6 4.5168 -1.6772 -5.6824 19 7 4.0548 -2.8676 -6.0014 20 14 3.7897 -0.1499 -6.4749 21 1 4.5377 0.1666 -7.7181 22 1 2.3627 -0.3949 -6.8046 23 1 3.8906 0.9929 -5.5320 24 6 7.4925 -3.9371 -2.6055 25 6 9.0108 -4.0471 -2.8551 26 6 9.2833 -3.0318 -3.9927 27 6 8.3386 -1.8573 -3.6361 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 2.3661 -1.1859 4.3749 36 1 3.6174 -2.9734 2.9152 37 1 2.5745 -2.4960 -0.7292 38 1 3.5205 -3.5665 0.3327 39 1 4.8882 -3.1419 -1.9504 40 1 7.1948 -1.6968 -1.1260 41 1 6.2614 -0.7206 -2.2853 42 1 5.8019 -3.5565 -4.4764 43 1 3.3369 -2.9518 -6.6483 44 1 7.2807 -4.0350 -1.5408 45 1 6.9653 -4.7107 -3.1640 46 1 9.5657 -3.7729 -1.9580 47 1 9.2729 -5.0561 -3.1735 48 1 9.0216 -3.4576 -4.9614 49 1 10.3240 -2.7080 -3.9804 50 1 8.1103 -1.2681 -4.5243 51 1 8.7851 -1.2294 -2.8650 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753669255.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:56 Heat of formation + Delta-G solvation = 21.700211 kcal Electronic energy + Delta-G solvation = -30261.528468 eV Core-core repulsion = 26389.567483 eV Total energy + Delta-G solvation = -3871.960986 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.08800 -39.53091 -38.22158 -35.24756 -34.26395 -33.85686 -33.42487 -30.80790 -28.94695 -28.50720 -28.31947 -27.09671 -27.03933 -24.44799 -23.26678 -22.73871 -21.30716 -20.72750 -20.01192 -19.14439 -18.61954 -17.35147 -17.15266 -17.00848 -15.89968 -15.37720 -15.16794 -14.92548 -14.66050 -14.54836 -14.16721 -14.11906 -13.57222 -13.44182 -13.41876 -13.30116 -13.07054 -12.79265 -12.69344 -12.41375 -12.03322 -11.84534 -11.54912 -11.40897 -11.22365 -11.09043 -10.87737 -10.85110 -10.81606 -10.72271 -10.60687 -10.35440 -10.22935 -10.12706 -9.97518 -9.82959 -9.76369 -9.28642 -8.99681 -8.61973 -8.21572 -7.12947 -5.91693 -3.21526 2.08828 2.70639 2.75521 3.29483 3.34136 3.41590 3.42506 3.57276 4.44191 4.47036 4.63388 4.73640 4.86744 4.95375 5.01997 5.06917 5.10790 5.14333 5.22697 5.33471 5.45625 5.57492 5.58096 5.65589 5.73844 5.76017 5.84856 5.85661 5.90354 5.97539 6.00399 6.05421 6.07819 6.15918 6.22345 6.26602 6.33186 6.40398 6.45285 6.45853 6.48527 6.67473 6.72011 6.84223 6.88213 6.96443 7.22894 7.61068 7.82811 8.24498 8.26967 8.44285 9.39054 9.91830 10.27547 11.29970 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010036 B = 0.004143 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.164425 B = 6756.574184 C = 8739.701081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.011 4.011 3 C -0.137 4.137 4 C 0.233 3.767 5 N -0.490 5.490 6 C -0.031 4.031 7 C -0.055 4.055 8 N -0.437 5.437 9 C 0.081 3.919 10 C 0.491 3.509 11 O -0.536 6.536 12 N -0.693 5.693 13 C 0.122 3.878 14 C 0.189 3.811 15 N -0.711 5.711 16 C -0.236 4.236 17 H 0.069 0.931 18 C -0.006 4.006 19 N -0.930 5.930 20 Si 0.899 3.101 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.125 4.125 25 C -0.121 4.121 26 C -0.117 4.117 27 C -0.132 4.132 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.166 0.834 36 H 0.170 0.830 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.406 0.594 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.058 0.942 48 H 0.068 0.932 49 H 0.054 0.946 50 H 0.079 0.921 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.665 -3.191 11.395 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 C -0.195 4.195 4 C -0.030 4.030 5 N -0.209 5.209 6 C -0.178 4.178 7 C -0.187 4.187 8 N -0.119 5.119 9 C -0.046 4.046 10 C 0.274 3.726 11 O -0.413 6.413 12 N -0.344 5.344 13 C -0.004 4.004 14 C 0.097 3.903 15 N -0.353 5.353 16 C -0.367 4.367 17 H 0.087 0.913 18 C -0.202 4.202 19 N -0.578 5.578 20 Si 0.730 3.270 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.163 4.163 25 C -0.159 4.159 26 C -0.155 4.155 27 C -0.172 4.172 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.184 0.816 36 H 0.187 0.813 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.241 0.759 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.086 0.914 49 H 0.073 0.927 50 H 0.097 0.903 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.490 -1.758 11.887 12.026 hybrid contribution -0.044 -0.667 -1.114 1.299 sum 0.447 -2.424 10.772 11.051 Atomic orbital electron populations 1.21777 0.93209 1.01970 1.02636 1.19559 0.96327 0.96263 0.90956 1.21735 1.01794 0.93844 1.02162 1.23148 0.96078 0.88175 0.95557 1.70164 1.24775 1.26977 0.98952 1.22168 1.01820 0.94500 0.99345 1.22572 1.08404 1.05027 0.82723 1.44852 1.38122 1.23064 1.05871 1.21719 0.96710 0.97315 0.88859 1.20496 0.85593 0.84968 0.81525 1.90744 1.67210 1.26536 1.56784 1.45702 1.26179 1.33606 1.28925 1.21895 0.84424 0.97877 0.96161 1.20462 0.89796 0.92135 0.87915 1.42573 1.47190 1.06629 1.38915 1.19082 1.12255 0.87256 1.18088 0.91276 1.24675 0.98871 0.96303 1.00356 1.69647 1.30357 1.20905 1.36926 0.86316 0.78465 0.82687 0.79524 1.21713 1.21768 1.20702 1.22422 0.95953 0.97522 1.00381 1.22305 0.96010 0.99050 0.98521 1.22387 0.98266 0.96237 0.98571 1.22832 0.95682 0.97467 1.01248 0.92885 0.91477 0.91798 0.90186 0.92142 0.92002 0.91702 0.81626 0.81300 0.86047 0.86276 0.75877 0.92728 0.91646 0.78103 0.93499 0.92169 0.91272 0.92296 0.92320 0.91371 0.92676 0.90268 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.18 37.16 0.34 -1.31 16 2 C -0.01 -0.15 3.25 -91.77 -0.30 -0.45 16 3 C -0.14 -1.97 9.18 37.16 0.34 -1.63 16 4 C 0.23 3.62 6.40 -155.42 -0.99 2.63 16 5 N -0.49 -8.00 11.25 -10.82 -0.12 -8.12 16 6 C -0.03 -0.43 11.87 -17.81 -0.21 -0.64 16 7 C -0.05 -0.72 11.58 -16.56 -0.19 -0.91 16 8 N -0.44 -6.22 2.24 -115.19 -0.26 -6.47 16 9 C 0.08 0.99 6.17 -5.19 -0.03 0.96 16 10 C 0.49 7.78 7.90 -10.99 -0.09 7.69 16 11 O -0.54 -10.59 16.42 5.56 0.09 -10.50 16 12 N -0.69 -10.83 5.09 -60.29 -0.31 -11.13 16 13 C 0.12 2.09 3.98 -4.04 -0.02 2.07 16 14 C 0.19 3.16 0.68 -130.70 -0.09 3.08 16 15 N -0.71 -14.78 4.64 -46.20 -0.21 -15.00 16 16 C -0.24 -5.71 8.39 -15.06 -0.13 -5.84 16 17 H 0.07 1.71 7.23 -52.49 -0.38 1.33 16 18 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 19 N -0.93 -25.24 13.07 55.49 0.73 -24.51 16 20 Si 0.90 21.10 29.55 -169.99 -5.02 16.07 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C -0.12 -1.75 5.92 -25.61 -0.15 -1.90 16 25 C -0.12 -1.54 6.83 -25.07 -0.17 -1.71 16 26 C -0.12 -1.66 6.91 -24.74 -0.17 -1.83 16 27 C -0.13 -2.15 5.95 -25.07 -0.15 -2.29 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.15 6.85 -51.93 -0.36 0.79 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.17 1.84 8.06 -52.48 -0.42 1.42 16 36 H 0.17 1.66 8.06 -52.49 -0.42 1.23 16 37 H 0.12 1.36 7.28 -51.93 -0.38 0.98 16 38 H 0.12 1.06 8.13 -51.93 -0.42 0.64 16 39 H 0.41 6.04 8.00 -40.82 -0.33 5.71 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 1.30 7.46 -51.93 -0.39 0.92 16 42 H 0.38 8.60 7.28 -40.82 -0.30 8.30 16 43 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 44 H 0.06 0.78 7.54 -51.93 -0.39 0.39 16 45 H 0.07 1.00 7.44 -51.93 -0.39 0.62 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 48 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.08 1.48 7.16 -51.93 -0.37 1.11 16 51 H 0.05 0.79 7.85 -51.93 -0.41 0.38 16 LS Contribution 409.49 15.07 6.17 6.17 Total: -1.00 -30.73 409.49 -9.78 -40.51 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -8.74 Total: 15.31 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -2.10 Total: -2.33 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: -0.18 Total: -65.23 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -30.73 -9.78 -40.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753669255.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.208 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds