Wall clock time and date at job start Tue Mar 31 2020 20:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47400 * 2 1 4 4 C 1.50696 * 109.47087 * 120.00077 * 2 1 3 5 5 N 1.30499 * 125.64823 * 300.03818 * 4 2 1 6 6 C 1.34135 * 109.25436 * 179.97438 * 5 4 2 7 7 C 1.34665 * 108.02266 * 359.73500 * 6 5 4 8 8 N 1.35043 * 125.65007 * 119.99876 * 4 2 1 9 9 C 1.46499 * 126.40148 * 0.03170 * 8 4 2 10 10 C 1.50700 * 109.46949 * 85.00061 * 9 8 4 11 11 O 1.21282 * 119.99898 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99866 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99624 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46996 * 175.58853 * 13 12 10 15 15 N 1.46497 * 110.06107 * 56.32563 * 14 13 12 16 16 C 1.36942 * 119.99779 * 57.74635 * 15 14 13 17 17 H 1.07998 * 119.99389 * 6.23711 * 16 15 14 18 18 C 1.38808 * 119.99883 * 186.23308 * 16 15 14 19 19 N 1.31623 * 119.99912 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99886 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47350 * 90.00106 * 20 18 16 22 22 H 1.48497 * 109.47088 * 210.00221 * 20 18 16 23 23 H 1.48502 * 109.47232 * 330.00064 * 20 18 16 24 24 C 1.53885 * 110.02885 * 294.90825 * 14 13 12 25 25 C 1.54262 * 106.59792 * 240.71767 * 24 14 13 26 26 C 1.54889 * 104.20010 * 336.38876 * 25 24 14 27 27 C 1.54264 * 110.03559 * 177.74656 * 14 13 12 28 28 H 1.08993 * 109.47401 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46659 * 300.00226 * 1 2 3 30 30 H 1.08998 * 109.46752 * 59.99634 * 1 2 3 31 31 H 1.09003 * 109.46659 * 239.99774 * 2 1 3 32 32 H 1.08996 * 109.46949 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46619 * 299.99977 * 3 2 1 34 34 H 1.08994 * 109.46834 * 59.99659 * 3 2 1 35 35 H 1.08006 * 125.98708 * 180.02562 * 6 5 4 36 36 H 1.08001 * 126.59424 * 180.27848 * 7 6 5 37 37 H 1.08997 * 109.46783 * 325.00818 * 9 8 4 38 38 H 1.09000 * 109.47588 * 205.00413 * 9 8 4 39 39 H 0.96998 * 120.00024 * 359.97438 * 12 10 9 40 40 H 1.08998 * 109.47807 * 55.58424 * 13 12 10 41 41 H 1.09000 * 109.47251 * 295.58101 * 13 12 10 42 42 H 0.96997 * 120.00087 * 237.75288 * 15 14 13 43 43 H 0.97000 * 119.99408 * 180.02562 * 19 18 16 44 44 H 1.08998 * 110.02985 * 0.02562 * 24 14 13 45 45 H 1.09003 * 110.02801 * 121.43539 * 24 14 13 46 46 H 1.08992 * 110.48801 * 95.07357 * 25 24 14 47 47 H 1.09008 * 110.48303 * 217.71652 * 25 24 14 48 48 H 1.09006 * 110.75842 * 279.63316 * 26 25 24 49 49 H 1.08999 * 110.75812 * 156.25765 * 26 25 24 50 50 H 1.08998 * 110.48711 * 261.57420 * 27 14 13 51 51 H 1.09006 * 110.48522 * 24.21356 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7854 -0.3624 2.4637 6 6 2.3925 -1.2216 3.2958 7 6 3.0354 -2.1401 2.5498 8 7 2.8120 -1.8130 1.2395 9 6 3.3190 -2.5290 0.0662 10 6 4.5913 -1.8763 -0.4094 11 8 5.0315 -0.9087 0.1745 12 7 5.2400 -2.3678 -1.4836 13 6 6.4772 -1.7336 -1.9456 14 6 7.0650 -2.5447 -3.1021 15 7 6.0778 -2.6763 -4.1764 16 6 5.5444 -1.5566 -4.7570 17 1 5.9234 -0.5799 -4.4949 18 6 4.5168 -1.6772 -5.6824 19 7 4.0548 -2.8676 -6.0014 20 14 3.7897 -0.1499 -6.4749 21 1 4.5377 0.1666 -7.7181 22 1 2.3627 -0.3949 -6.8046 23 1 3.8906 0.9929 -5.5320 24 6 7.4925 -3.9371 -2.6055 25 6 9.0108 -4.0471 -2.8551 26 6 9.2833 -3.0318 -3.9927 27 6 8.3386 -1.8573 -3.6361 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 2.3661 -1.1859 4.3749 36 1 3.6174 -2.9734 2.9152 37 1 2.5745 -2.4960 -0.7292 38 1 3.5205 -3.5665 0.3327 39 1 4.8882 -3.1419 -1.9504 40 1 7.1948 -1.6968 -1.1260 41 1 6.2614 -0.7206 -2.2853 42 1 5.8019 -3.5565 -4.4764 43 1 3.3369 -2.9518 -6.6483 44 1 7.2807 -4.0350 -1.5408 45 1 6.9653 -4.7107 -3.1640 46 1 9.5657 -3.7729 -1.9580 47 1 9.2729 -5.0561 -3.1735 48 1 9.0216 -3.4576 -4.9614 49 1 10.3240 -2.7080 -3.9804 50 1 8.1103 -1.2681 -4.5243 51 1 8.7851 -1.2294 -2.8650 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753669255.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:53 Heat of formation + Delta-G solvation = 3.734451 kcal Electronic energy + Delta-G solvation = -30262.307522 eV Core-core repulsion = 26389.567483 eV Total energy + Delta-G solvation = -3872.740040 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.15284 -40.85612 -39.54731 -36.32012 -35.61455 -35.13415 -34.96948 -32.44827 -30.20179 -29.68373 -29.54331 -28.34175 -28.10697 -26.04412 -24.77119 -23.82762 -22.40099 -21.90800 -21.22768 -20.37515 -19.89906 -18.94058 -18.47546 -18.24893 -17.27661 -16.59439 -16.44357 -16.18336 -16.02367 -15.71264 -15.61132 -15.26663 -15.16381 -14.70005 -14.64627 -14.37405 -14.24505 -14.04158 -13.84193 -13.64678 -13.23605 -13.16630 -13.06677 -12.92239 -12.50115 -12.45317 -12.33636 -12.19189 -12.17614 -11.94667 -11.88966 -11.72950 -11.58538 -11.42510 -11.41436 -11.31686 -10.93652 -10.88285 -10.44678 -9.99822 -9.26156 -8.94719 -7.90613 -5.16121 1.01062 1.44245 1.48666 1.50726 1.53025 1.69534 2.21159 2.37052 2.57309 3.38795 3.40461 3.64503 3.70932 3.74914 3.78213 3.85671 3.95871 4.05578 4.10503 4.14516 4.15483 4.32162 4.42471 4.57681 4.58887 4.66226 4.71325 4.73531 4.74863 4.85282 4.86473 4.89019 4.95972 5.01272 5.04212 5.12976 5.18099 5.21874 5.26901 5.27276 5.39229 5.40554 5.45257 5.54843 5.63346 5.64642 5.88409 6.15361 6.33348 6.56721 7.16483 7.18881 7.41611 8.13616 8.39315 9.31233 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010036 B = 0.004143 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.164425 B = 6756.574184 C = 8739.701081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.014 4.014 3 C -0.131 4.131 4 C 0.212 3.788 5 N -0.518 5.518 6 C -0.053 4.053 7 C -0.050 4.050 8 N -0.443 5.443 9 C 0.085 3.915 10 C 0.492 3.508 11 O -0.578 6.578 12 N -0.689 5.689 13 C 0.131 3.869 14 C 0.186 3.814 15 N -0.712 5.712 16 C -0.215 4.215 17 H 0.060 0.940 18 C -0.056 4.056 19 N -0.956 5.956 20 Si 0.943 3.057 21 H -0.295 1.295 22 H -0.296 1.296 23 H -0.282 1.282 24 C -0.118 4.118 25 C -0.113 4.113 26 C -0.113 4.113 27 C -0.134 4.134 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.188 0.812 36 H 0.204 0.796 37 H 0.133 0.867 38 H 0.162 0.838 39 H 0.411 0.589 40 H 0.064 0.936 41 H 0.029 0.971 42 H 0.377 0.623 43 H 0.248 0.752 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.050 0.950 49 H 0.075 0.925 50 H 0.047 0.953 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.356 -4.808 12.631 13.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.034 4.034 3 C -0.189 4.189 4 C -0.051 4.051 5 N -0.237 5.237 6 C -0.200 4.200 7 C -0.182 4.182 8 N -0.124 5.124 9 C -0.041 4.041 10 C 0.277 3.723 11 O -0.458 6.458 12 N -0.339 5.339 13 C 0.005 3.995 14 C 0.095 3.905 15 N -0.353 5.353 16 C -0.347 4.347 17 H 0.078 0.922 18 C -0.249 4.249 19 N -0.607 5.607 20 Si 0.775 3.225 21 H -0.222 1.222 22 H -0.222 1.222 23 H -0.208 1.208 24 C -0.156 4.156 25 C -0.151 4.151 26 C -0.151 4.151 27 C -0.174 4.174 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.205 0.795 36 H 0.221 0.779 37 H 0.151 0.849 38 H 0.180 0.820 39 H 0.248 0.752 40 H 0.083 0.917 41 H 0.048 0.952 42 H 0.211 0.789 43 H 0.058 0.942 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.069 0.931 49 H 0.094 0.906 50 H 0.066 0.934 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.204 -3.379 13.138 13.619 hybrid contribution -0.148 -0.112 -1.427 1.439 sum 1.056 -3.490 11.711 12.265 Atomic orbital electron populations 1.21711 0.91569 1.02463 1.03007 1.19611 0.97691 0.95597 0.90488 1.21667 0.99751 0.94685 1.02783 1.23345 0.96991 0.89061 0.95701 1.70117 1.25829 1.28053 0.99708 1.22685 1.02174 0.94628 1.00520 1.23176 1.07512 1.05368 0.82101 1.45016 1.37783 1.22892 1.06745 1.21884 0.94750 0.98668 0.88818 1.21090 0.86233 0.84230 0.80764 1.90731 1.68584 1.28446 1.58077 1.45659 1.25804 1.33540 1.28918 1.21706 0.85318 0.96125 0.96395 1.20684 0.88880 0.94295 0.86594 1.42613 1.47753 1.05216 1.39722 1.19175 1.10919 0.87910 1.16716 0.92205 1.25114 1.00146 0.97774 1.01839 1.69736 1.31131 1.21864 1.37965 0.85605 0.77523 0.80824 0.78583 1.22238 1.22243 1.20773 1.22364 0.97060 0.95015 1.01134 1.22299 0.94835 0.99456 0.98518 1.22356 0.98770 0.95584 0.98397 1.22801 0.96139 0.98230 1.00231 0.92322 0.91986 0.90460 0.90724 0.95064 0.90572 0.91840 0.79484 0.77882 0.84905 0.82029 0.75200 0.91741 0.95240 0.78879 0.94247 0.90500 0.91597 0.90467 0.90681 0.93097 0.90645 0.93450 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.18 71.98 0.66 -2.34 16 2 C -0.01 -0.38 3.25 -11.54 -0.04 -0.42 16 3 C -0.13 -3.83 9.18 71.98 0.66 -3.17 16 4 C 0.21 6.47 6.40 138.13 0.88 7.35 16 5 N -0.52 -16.69 11.25 -188.13 -2.12 -18.81 16 6 C -0.05 -1.43 11.87 83.52 0.99 -0.44 16 7 C -0.05 -1.18 11.58 83.08 0.96 -0.22 16 8 N -0.44 -11.85 2.24 -518.35 -1.16 -13.01 16 9 C 0.08 1.89 6.17 85.63 0.53 2.42 16 10 C 0.49 14.99 7.90 87.66 0.69 15.68 16 11 O -0.58 -22.78 16.42 -3.03 -0.05 -22.83 16 12 N -0.69 -20.68 5.09 -463.06 -2.36 -23.04 16 13 C 0.13 4.39 3.98 86.38 0.34 4.73 16 14 C 0.19 6.04 0.68 4.33 0.00 6.05 16 15 N -0.71 -29.48 4.64 -300.07 -1.39 -30.87 16 16 C -0.21 -10.51 8.39 84.03 0.71 -9.81 16 17 H 0.06 3.02 7.23 -2.91 -0.02 3.00 16 18 C -0.06 -2.89 5.50 84.86 0.47 -2.42 16 19 N -0.96 -52.26 13.07 21.65 0.28 -51.98 16 20 Si 0.94 43.94 29.55 68.60 2.03 45.97 16 21 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 22 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 24 C -0.12 -2.99 5.92 31.32 0.19 -2.81 16 25 C -0.11 -2.49 6.83 31.67 0.22 -2.27 16 26 C -0.11 -2.97 6.91 31.89 0.22 -2.75 16 27 C -0.13 -4.24 5.95 31.67 0.19 -4.05 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 2.13 6.85 -2.39 -0.02 2.11 16 32 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.19 3.87 8.06 -2.91 -0.02 3.85 16 36 H 0.20 3.21 8.06 -2.91 -0.02 3.19 16 37 H 0.13 2.71 7.28 -2.39 -0.02 2.69 16 38 H 0.16 2.21 8.13 -2.39 -0.02 2.19 16 39 H 0.41 11.56 8.00 -92.71 -0.74 10.82 16 40 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.03 1.20 7.46 -2.39 -0.02 1.18 16 42 H 0.38 16.78 7.28 -92.71 -0.68 16.11 16 43 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 44 H 0.08 1.72 7.54 -2.39 -0.02 1.70 16 45 H 0.07 1.75 7.44 -2.39 -0.02 1.74 16 46 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 48 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 49 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.05 1.79 7.16 -2.39 -0.02 1.77 16 51 H 0.07 1.90 7.85 -2.38 -0.02 1.88 16 Total: -1.00 -67.99 409.49 2.41 -65.58 By element: Atomic # 1 Polarization: 43.95 SS G_CDS: -0.49 Total: 43.46 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 7.67 Total: 5.53 kcal Atomic # 7 Polarization: -130.96 SS G_CDS: -6.75 Total: -137.71 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.05 Total: -22.83 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -67.99 2.41 -65.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753669255.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.312 kcal (2) G-P(sol) polarization free energy of solvation -67.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds