Wall clock time and date at job start Tue Mar 31 2020 18:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50702 * 109.47003 * 2 1 4 4 C 1.34674 * 126.58842 * 84.97684 * 3 2 1 5 5 N 1.34127 * 108.01612 * 180.02562 * 4 3 2 6 6 C 1.30495 * 109.25824 * 0.02562 * 5 4 3 7 7 C 1.50705 * 125.65017 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46989 * 305.02326 * 7 6 5 9 9 O 1.21276 * 120.00166 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99585 * 179.97438 * 8 7 6 11 11 C 1.46957 * 120.65462 * 359.81587 * 10 8 7 12 12 C 1.53197 * 108.89063 * 233.53473 * 11 10 8 13 13 C 1.53040 * 109.31110 * 305.44560 * 12 11 10 14 14 C 1.53044 * 109.53662 * 61.36306 * 13 12 11 15 15 H 1.08997 * 109.49691 * 58.58900 * 14 13 12 16 16 C 1.53008 * 109.52383 * 178.66719 * 14 13 12 17 17 H 1.09003 * 109.46951 * 304.85474 * 16 14 13 18 18 C 1.52998 * 109.46793 * 64.85204 * 16 14 13 19 19 N 1.46490 * 109.46919 * 184.85490 * 16 14 13 20 20 C 1.36946 * 119.99823 * 154.99984 * 19 16 14 21 21 H 1.07994 * 119.99649 * 359.97438 * 20 19 16 22 22 C 1.38813 * 119.99922 * 179.97438 * 20 19 16 23 23 N 1.31620 * 120.00222 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99745 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47230 * 60.00331 * 24 22 20 26 26 H 1.48502 * 109.47315 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47404 * 300.00515 * 24 22 20 28 28 C 1.46926 * 120.62730 * 180.02562 * 10 8 7 29 29 N 1.35041 * 108.69939 * 0.25681 * 6 5 4 30 30 H 0.97008 * 126.39579 * 179.74067 * 29 6 5 31 31 H 1.08995 * 109.47220 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46833 * 299.99679 * 1 2 3 33 33 H 1.09000 * 109.47161 * 59.99520 * 1 2 3 34 34 H 1.08996 * 109.46633 * 240.00020 * 2 1 3 35 35 H 1.09003 * 109.46790 * 119.99813 * 2 1 3 36 36 H 1.07998 * 125.98928 * 0.02562 * 4 3 2 37 37 H 1.09002 * 109.46970 * 185.02113 * 7 6 5 38 38 H 1.08999 * 109.46766 * 65.02516 * 7 6 5 39 39 H 1.09001 * 109.46843 * 113.75468 * 11 10 8 40 40 H 1.08997 * 109.71602 * 353.46961 * 11 10 8 41 41 H 1.08995 * 109.50005 * 185.49506 * 12 11 10 42 42 H 1.08994 * 109.52103 * 65.41136 * 12 11 10 43 43 H 1.08994 * 109.45892 * 301.34445 * 13 12 11 44 44 H 1.09000 * 109.46209 * 181.38193 * 13 12 11 45 45 H 1.09007 * 109.46691 * 180.02562 * 18 16 14 46 46 H 1.08996 * 109.47523 * 299.99813 * 18 16 14 47 47 H 1.08994 * 109.47258 * 60.00707 * 18 16 14 48 48 H 0.96994 * 120.00742 * 334.99387 * 19 16 14 49 49 H 0.96998 * 119.99831 * 179.97438 * 23 22 20 50 50 H 1.09002 * 109.58861 * 6.60251 * 28 10 8 51 51 H 1.08996 * 109.58519 * 246.32142 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2107 2.2092 1.0772 5 7 2.6692 3.3957 0.6516 6 6 2.7813 3.3726 -0.6483 7 6 3.2629 4.5123 -1.5088 8 6 2.4310 5.7378 -1.2310 9 8 1.5350 5.6904 -0.4150 10 7 2.6829 6.8866 -1.8893 11 6 3.7676 6.9613 -2.8780 12 6 4.6873 8.1323 -2.5177 13 6 3.8554 9.4114 -2.3994 14 6 2.8214 9.2480 -1.2830 15 1 3.3310 9.0343 -0.3435 16 6 2.0119 10.5388 -1.1427 17 1 2.6900 11.3775 -0.9844 18 6 1.2004 10.7730 -2.4185 19 7 1.1028 10.4233 0.0001 20 6 0.6643 11.5503 0.6429 21 1 0.9891 12.5241 0.3074 22 6 -0.1976 11.4409 1.7255 23 7 -0.5930 10.2541 2.1346 24 14 -0.7950 12.9781 2.6026 25 1 -1.5312 13.8406 1.6437 26 1 -1.6981 12.5930 3.7167 27 1 0.3696 13.7229 3.1449 28 6 1.8809 8.0898 -1.6289 29 7 2.3882 2.1605 -1.0953 30 1 2.3651 1.8676 -2.0199 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.0182 1.9343 2.1037 37 1 3.1680 4.2393 -2.5598 38 1 4.3078 4.7231 -1.2810 39 1 3.3447 7.1207 -3.8699 40 1 4.3380 6.0325 -2.8689 41 1 5.4388 8.2579 -3.2971 42 1 5.1798 7.9294 -1.5667 43 1 3.3440 9.6005 -3.3431 44 1 4.5108 10.2508 -2.1672 45 1 0.6241 11.6929 -2.3187 46 1 1.8769 10.8589 -3.2688 47 1 0.5224 9.9345 -2.5768 48 1 0.8113 9.5487 0.3016 49 1 -1.1950 10.1777 2.8913 50 1 1.2059 7.9053 -0.7932 51 1 1.3020 8.3424 -2.5172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753796818.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:13 Heat of formation + Delta-G solvation = 23.164751 kcal Electronic energy + Delta-G solvation = -29363.076860 eV Core-core repulsion = 25491.179381 eV Total energy + Delta-G solvation = -3871.897478 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.19348 -40.02768 -37.76472 -35.36631 -34.38514 -32.98122 -32.48704 -31.81946 -31.40687 -29.65576 -27.88875 -27.17003 -25.15364 -24.34717 -23.50583 -23.09359 -21.42716 -21.04120 -20.68946 -19.16922 -18.52625 -17.59076 -17.17932 -16.79160 -15.74228 -15.57983 -14.95349 -14.77411 -14.66314 -14.56301 -14.29538 -13.87366 -13.77593 -13.63358 -13.51477 -13.39514 -12.98831 -12.84185 -12.63999 -12.54983 -12.40639 -12.11632 -11.89335 -11.78118 -11.48122 -11.46571 -11.08954 -10.94473 -10.77299 -10.56701 -10.37000 -10.19934 -10.14934 -9.99086 -9.84774 -9.80469 -9.54830 -9.42761 -8.80661 -8.35103 -8.26608 -6.84729 -5.63091 -2.93097 1.88975 2.75979 2.86529 3.09396 3.36550 3.51199 3.55071 3.57078 4.21142 4.56055 4.58129 4.67219 4.68173 4.76301 4.78953 4.93921 5.01135 5.05818 5.15653 5.27535 5.29744 5.35064 5.39166 5.45284 5.51762 5.56513 5.67205 5.69810 5.72655 5.82264 5.89359 5.92215 5.93076 6.02669 6.13882 6.18648 6.19820 6.30657 6.44038 6.48507 6.64781 6.71775 6.73848 6.84673 6.97896 7.19423 7.25204 7.59450 7.79620 8.13978 8.42679 8.54220 9.64798 10.23696 10.57603 11.58744 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011130 B = 0.002904 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.099501 B = 9641.050716 C =11634.024354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.044 4.044 3 C -0.028 4.028 4 C -0.018 4.018 5 N -0.452 5.452 6 C 0.218 3.782 7 C -0.052 4.052 8 C 0.513 3.487 9 O -0.502 6.502 10 N -0.614 5.614 11 C 0.107 3.893 12 C -0.135 4.135 13 C -0.114 4.114 14 C -0.104 4.104 15 H 0.074 0.926 16 C 0.180 3.820 17 H 0.048 0.952 18 C -0.169 4.169 19 N -0.725 5.725 20 C -0.241 4.241 21 H 0.068 0.932 22 C -0.013 4.013 23 N -0.928 5.928 24 Si 0.905 3.095 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.287 1.287 28 C 0.118 3.882 29 N -0.564 5.564 30 H 0.413 0.587 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.168 0.832 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.037 0.963 47 H 0.048 0.952 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.099 0.901 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.495 -19.421 -14.818 26.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 C -0.143 4.143 4 C -0.167 4.167 5 N -0.171 5.171 6 C -0.046 4.046 7 C -0.093 4.093 8 C 0.298 3.702 9 O -0.375 6.375 10 N -0.349 5.349 11 C -0.016 4.016 12 C -0.173 4.173 13 C -0.152 4.152 14 C -0.124 4.124 15 H 0.093 0.907 16 C 0.070 3.930 17 H 0.066 0.934 18 C -0.229 4.229 19 N -0.367 5.367 20 C -0.372 4.372 21 H 0.086 0.914 22 C -0.209 4.209 23 N -0.576 5.576 24 Si 0.736 3.264 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.214 1.214 28 C -0.003 4.003 29 N -0.168 5.168 30 H 0.251 0.749 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.185 0.815 37 H 0.120 0.880 38 H 0.135 0.865 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.056 0.944 47 H 0.067 0.933 48 H 0.220 0.780 49 H 0.065 0.935 50 H 0.118 0.882 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.126 -18.613 -13.700 25.650 hybrid contribution -0.662 -0.163 -0.418 0.800 sum 10.464 -18.777 -14.118 25.717 Atomic orbital electron populations 1.21791 0.94401 1.01753 1.02767 1.19956 0.96083 0.89081 1.03121 1.21207 1.09219 0.96523 0.87329 1.22142 1.05868 0.89994 0.98708 1.70283 1.17091 1.21613 1.08064 1.22266 1.04599 0.86584 0.91188 1.19963 1.01359 0.89729 0.98294 1.20050 0.84969 0.83841 0.81376 1.90841 1.31085 1.83521 1.32038 1.48149 1.34476 1.11017 1.41232 1.21721 0.88618 0.99291 0.91991 1.21923 0.97800 0.95418 1.02185 1.21599 0.97486 0.96799 0.99282 1.21776 0.96134 0.95960 0.98530 0.90716 1.20166 0.91093 0.93563 0.88196 0.93395 1.22579 1.00291 1.01730 0.98320 1.42494 1.54307 1.06887 1.33012 1.19160 1.22147 0.86926 1.08969 0.91361 1.24756 1.00616 0.96385 0.99165 1.69671 1.38087 1.21118 1.28704 0.86314 0.78307 0.82576 0.79224 1.21411 1.21763 1.21378 1.21803 0.93451 0.82444 1.02625 1.43053 1.51789 1.12567 1.09397 0.74939 0.92135 0.91827 0.92880 0.91509 0.89514 0.81517 0.87966 0.86540 0.91454 0.90392 0.91037 0.91418 0.91584 0.91666 0.92944 0.94380 0.93267 0.78012 0.93460 0.88245 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.90 37.16 0.37 -0.72 16 2 C -0.04 -0.31 6.49 -27.88 -0.18 -0.49 16 3 C -0.03 -0.30 6.49 -81.60 -0.53 -0.83 16 4 C -0.02 -0.25 11.79 -17.81 -0.21 -0.46 16 5 N -0.45 -7.62 10.58 -10.81 -0.11 -7.74 16 6 C 0.22 2.89 6.96 -155.42 -1.08 1.81 16 7 C -0.05 -0.55 4.68 -29.03 -0.14 -0.68 16 8 C 0.51 8.01 7.69 -10.98 -0.08 7.92 16 9 O -0.50 -10.79 14.96 5.56 0.08 -10.71 16 10 N -0.61 -8.50 2.98 -172.77 -0.51 -9.02 16 11 C 0.11 0.98 6.33 -3.69 -0.02 0.95 16 12 C -0.13 -1.29 6.08 -26.61 -0.16 -1.45 16 13 C -0.11 -1.38 4.89 -26.69 -0.13 -1.51 16 14 C -0.10 -1.73 2.27 -90.52 -0.21 -1.93 16 15 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 16 C 0.18 3.60 2.67 -67.93 -0.18 3.41 16 17 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 18 C -0.17 -3.02 8.77 37.16 0.33 -2.69 16 19 N -0.72 -18.78 5.06 -53.43 -0.27 -19.05 16 20 C -0.24 -6.89 9.93 -15.05 -0.15 -7.04 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -29.54 13.06 55.49 0.72 -28.81 16 24 Si 0.90 23.21 29.55 -169.99 -5.02 18.19 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 C 0.12 2.01 5.18 -3.73 -0.02 1.99 16 29 N -0.56 -5.66 6.15 -6.54 -0.04 -5.70 16 30 H 0.41 2.58 8.96 -40.82 -0.37 2.21 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.17 2.00 8.06 -52.49 -0.42 1.57 16 37 H 0.10 0.65 7.95 -51.93 -0.41 0.24 16 38 H 0.12 1.01 7.69 -51.93 -0.40 0.61 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.48 5.95 -51.93 -0.31 0.18 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.75 6.63 -51.93 -0.34 0.41 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 46 H 0.04 0.55 6.59 -51.93 -0.34 0.21 16 47 H 0.05 0.89 6.23 -51.93 -0.32 0.56 16 48 H 0.39 10.87 6.46 -40.82 -0.26 10.60 16 49 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 50 H 0.10 2.16 5.82 -51.93 -0.30 1.86 16 51 H 0.07 1.11 6.05 -51.93 -0.31 0.79 16 LS Contribution 399.46 15.07 6.02 6.02 Total: -1.00 -38.43 399.46 -10.05 -48.48 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -8.42 Total: 10.55 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -2.50 Total: -2.20 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -0.22 Total: -70.32 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.08 Total: -10.71 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -38.43 -10.05 -48.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753796818.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.644 kcal (2) G-P(sol) polarization free energy of solvation -38.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds