Wall clock time and date at job start Tue Mar 31 2020 18:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.47077 * 2 1 4 4 C 1.35368 * 126.38286 * 84.97095 * 3 2 1 5 5 C 1.41505 * 105.50153 * 180.02562 * 4 3 2 6 6 C 1.47710 * 126.51510 * 179.97438 * 5 4 3 7 7 O 1.21567 * 120.00414 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99732 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99848 * 179.97438 * 8 6 5 10 10 H 1.08993 * 109.47429 * 35.00394 * 9 8 6 11 11 C 1.53003 * 109.47155 * 274.99884 * 9 8 6 12 12 C 1.52994 * 109.46945 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47099 * 60.00218 * 12 11 9 14 14 C 1.52996 * 109.47324 * 299.99749 * 13 12 11 15 15 C 1.53004 * 109.46660 * 155.00228 * 9 8 6 16 16 H 1.08999 * 109.47217 * 60.00344 * 15 9 8 17 17 C 1.52996 * 109.47336 * 299.99745 * 15 9 8 18 18 N 1.46498 * 109.47059 * 175.00083 * 17 15 9 19 19 C 1.36943 * 119.99752 * 179.72430 * 18 17 15 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 17 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 17 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47213 * 60.00246 * 23 21 19 25 25 H 1.48502 * 109.47317 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47081 * 299.99875 * 23 21 19 27 27 N 1.31807 * 106.96245 * 0.24489 * 5 4 3 28 28 N 1.28467 * 110.07381 * 359.59142 * 27 5 4 29 29 C 1.46500 * 124.88398 * 180.20062 * 28 27 5 30 30 H 1.09004 * 109.47469 * 299.99658 * 1 2 3 31 31 H 1.09003 * 109.47341 * 60.00106 * 1 2 3 32 32 H 1.09002 * 109.46720 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47469 * 240.00341 * 2 1 3 34 34 H 1.09003 * 109.47341 * 119.99894 * 2 1 3 35 35 H 1.08001 * 127.25196 * 0.02562 * 4 3 2 36 36 H 0.97000 * 120.00104 * 0.02562 * 8 6 5 37 37 H 1.08995 * 109.46731 * 60.00496 * 11 9 8 38 38 H 1.08994 * 109.46929 * 300.00247 * 11 9 8 39 39 H 1.09000 * 109.47864 * 300.00473 * 12 11 9 40 40 H 1.09001 * 109.47328 * 180.02562 * 12 11 9 41 41 H 1.09005 * 109.47165 * 179.97438 * 13 12 11 42 42 H 1.08999 * 109.46900 * 60.00147 * 13 12 11 43 43 H 1.09000 * 109.47017 * 300.00357 * 14 13 12 44 44 H 1.08995 * 109.47011 * 179.97438 * 14 13 12 45 45 H 1.09004 * 109.47066 * 55.00351 * 17 15 9 46 46 H 1.08994 * 109.46974 * 295.00498 * 17 15 9 47 47 H 0.97001 * 120.00384 * 0.02562 * 18 17 15 48 48 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 49 49 H 1.08996 * 109.47766 * 270.24784 * 29 28 27 50 50 H 1.09005 * 109.47190 * 30.25638 * 29 28 27 51 51 H 1.09007 * 109.46997 * 150.24391 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2099 2.2097 1.0856 5 6 2.6917 3.4417 0.5831 6 6 3.0400 4.6384 1.3759 7 8 2.9215 4.6218 2.5857 8 7 3.4901 5.7485 0.7580 9 6 3.8350 6.9355 1.5442 10 1 4.2640 6.6278 2.4978 11 6 2.5739 7.7645 1.7961 12 6 2.9342 9.0045 2.6166 13 6 3.9531 9.8472 1.8467 14 6 5.2142 9.0183 1.5947 15 6 4.8541 7.7783 0.7747 16 1 4.4250 8.0862 -0.1788 17 6 6.1151 6.9494 0.5228 18 7 7.0423 7.7135 -0.3155 19 6 8.2495 7.1726 -0.6698 20 1 8.5160 6.1810 -0.3349 21 6 9.1305 7.8988 -1.4593 22 7 8.8057 9.1074 -1.8670 23 14 10.7768 7.1607 -1.9432 24 1 10.5519 5.9109 -2.7130 25 1 11.5270 8.1305 -2.7810 26 1 11.5606 6.8543 -0.7197 27 7 2.7650 3.3203 -0.7273 28 7 2.3885 2.1446 -1.0829 29 6 2.3468 1.6604 -2.4649 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0232 1.9530 2.1179 36 1 3.5850 5.7616 -0.2072 37 1 1.8479 7.1641 2.3443 38 1 2.1450 8.0723 0.8426 39 1 3.3635 8.6973 3.5702 40 1 2.0358 9.5949 2.7965 41 1 4.2095 10.7309 2.4310 42 1 3.5238 10.1546 0.8931 43 1 5.6434 8.7109 2.5484 44 1 5.9398 9.6185 1.0459 45 1 5.8457 6.0231 0.0155 46 1 6.5930 6.7168 1.4744 47 1 6.8030 8.6042 -0.6160 48 1 9.4212 9.6147 -2.4190 49 1 1.3711 1.8807 -2.8979 50 1 3.1232 2.1566 -3.0474 51 1 2.5154 0.5836 -2.4779 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754350377.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:49 Heat of formation + Delta-G solvation = 26.840420 kcal Electronic energy + Delta-G solvation = -29252.385172 eV Core-core repulsion = 25380.647083 eV Total energy + Delta-G solvation = -3871.738089 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.81729 -39.81820 -37.95971 -34.73121 -34.55073 -33.94166 -33.52694 -31.82438 -29.82680 -29.54196 -29.19817 -27.44030 -25.17467 -24.06871 -23.52887 -22.89564 -21.62312 -20.88610 -20.53882 -19.98439 -19.12905 -17.50206 -17.03178 -16.50481 -16.40978 -15.90733 -14.93190 -14.91034 -14.55617 -14.55138 -14.25856 -14.09925 -13.75576 -13.62643 -13.58279 -13.27846 -13.10539 -12.96376 -12.88225 -12.67460 -12.58838 -12.29880 -11.97079 -11.74712 -11.52316 -11.45202 -11.01998 -10.86984 -10.82859 -10.82838 -10.64287 -10.36437 -10.20077 -10.05057 -9.91418 -9.76993 -9.56827 -9.23989 -9.06498 -8.83620 -8.70505 -6.85467 -5.71882 -2.99472 1.56488 1.99406 2.28926 3.33023 3.46813 3.50868 3.52168 3.54665 4.17223 4.24120 4.51604 4.61815 4.71269 4.77005 4.87513 4.91344 5.00359 5.02899 5.11088 5.15467 5.20889 5.33884 5.38865 5.44766 5.49443 5.55080 5.63173 5.67750 5.72747 5.74778 5.76572 5.83307 5.84034 5.97828 6.19761 6.23792 6.27538 6.31987 6.34157 6.37047 6.48131 6.60195 6.64597 6.68629 6.78054 6.89389 7.00276 7.61736 7.74804 7.90493 8.39009 8.47649 9.58585 10.17246 10.52525 11.51114 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009014 B = 0.003240 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3105.382139 B = 8638.680821 C =11136.662090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 C 0.009 3.991 4 C -0.177 4.177 5 C -0.012 4.012 6 C 0.605 3.395 7 O -0.539 6.539 8 N -0.706 5.706 9 C 0.154 3.846 10 H 0.089 0.911 11 C -0.126 4.126 12 C -0.114 4.114 13 C -0.121 4.121 14 C -0.107 4.107 15 C -0.099 4.099 16 H 0.075 0.925 17 C 0.158 3.842 18 N -0.730 5.730 19 C -0.235 4.235 20 H 0.068 0.932 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.906 3.094 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.286 1.286 27 N -0.257 5.257 28 N -0.280 5.280 29 C 0.084 3.916 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.160 0.840 36 H 0.408 0.592 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.079 0.921 45 H 0.020 0.980 46 H 0.018 0.982 47 H 0.384 0.616 48 H 0.255 0.745 49 H 0.084 0.916 50 H 0.099 0.901 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.014 -14.252 2.683 24.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.091 4.091 3 C -0.115 4.115 4 C -0.205 4.205 5 C -0.172 4.172 6 C 0.389 3.611 7 O -0.414 6.414 8 N -0.356 5.356 9 C 0.050 3.950 10 H 0.107 0.893 11 C -0.165 4.165 12 C -0.152 4.152 13 C -0.159 4.159 14 C -0.145 4.145 15 C -0.119 4.119 16 H 0.093 0.907 17 C 0.030 3.970 18 N -0.375 5.375 19 C -0.367 4.367 20 H 0.086 0.914 21 C -0.211 4.211 22 N -0.584 5.584 23 Si 0.737 3.263 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.213 1.213 27 N -0.092 5.092 28 N -0.069 5.069 29 C -0.056 4.056 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.178 0.822 36 H 0.243 0.757 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.038 0.962 46 H 0.036 0.964 47 H 0.218 0.782 48 H 0.064 0.936 49 H 0.102 0.898 50 H 0.118 0.882 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.650 -13.812 2.427 24.140 hybrid contribution 0.775 -0.556 -0.367 1.022 sum -18.874 -14.368 2.060 23.810 Atomic orbital electron populations 1.21762 0.94053 1.02115 1.02618 1.20104 0.96389 0.88828 1.03828 1.21368 1.06258 0.96962 0.86955 1.21473 1.07015 0.92457 0.99546 1.21934 1.08465 0.96981 0.89846 1.16858 0.76871 0.81068 0.86263 1.90766 1.54377 1.83129 1.13147 1.45955 1.65464 1.12620 1.11535 1.21042 0.94548 0.83828 0.95623 0.89308 1.21898 0.97568 0.96553 1.00466 1.21484 0.98900 0.95933 0.98909 1.21599 0.96036 0.98064 1.00186 1.21485 0.97134 0.95674 1.00173 1.21576 0.95729 0.95711 0.98845 0.90708 1.20670 0.88591 0.93532 0.94163 1.42353 1.16920 1.18256 1.59927 1.19187 0.93160 0.99173 1.25150 0.91420 1.24709 0.98756 0.96574 1.01016 1.69648 1.36830 1.11033 1.40884 0.86281 0.84074 0.77866 0.78061 1.21389 1.21724 1.21328 1.73586 1.18025 1.02629 1.15009 1.45303 1.45622 1.08129 1.07828 1.22169 1.04895 1.00998 0.77564 0.91887 0.92788 0.91788 0.90763 0.89137 0.82232 0.75681 0.91750 0.91910 0.91863 0.92206 0.92123 0.92054 0.92014 0.90241 0.96231 0.96399 0.78233 0.93557 0.89769 0.88186 0.88770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.89 37.16 0.37 -0.41 16 2 C -0.05 -0.32 6.21 -27.88 -0.17 -0.49 16 3 C 0.01 0.09 6.17 -82.21 -0.51 -0.42 16 4 C -0.18 -2.24 10.73 -39.36 -0.42 -2.66 16 5 C -0.01 -0.18 7.13 -82.76 -0.59 -0.77 16 6 C 0.61 9.95 7.79 -12.39 -0.10 9.86 16 7 O -0.54 -10.05 16.59 5.31 0.09 -9.96 16 8 N -0.71 -10.86 4.30 -54.79 -0.24 -11.09 16 9 C 0.15 2.35 1.90 -67.93 -0.13 2.22 16 10 H 0.09 1.49 7.57 -51.93 -0.39 1.10 16 11 C -0.13 -1.68 5.50 -26.73 -0.15 -1.83 16 12 C -0.11 -1.39 5.92 -26.73 -0.16 -1.55 16 13 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 14 C -0.11 -1.70 5.08 -26.76 -0.14 -1.84 16 15 C -0.10 -1.66 1.80 -90.64 -0.16 -1.82 16 16 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 17 C 0.16 3.32 5.57 -4.04 -0.02 3.30 16 18 N -0.73 -18.75 5.33 -59.91 -0.32 -19.07 16 19 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 22 N -0.93 -28.52 13.06 55.49 0.72 -27.79 16 23 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 N -0.26 -3.58 11.67 33.42 0.39 -3.19 16 28 N -0.28 -3.02 3.70 -63.85 -0.24 -3.25 16 29 C 0.08 0.52 11.11 59.85 0.66 1.18 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.32 6.86 -51.93 -0.36 -0.03 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.41 6.13 8.12 -40.82 -0.33 5.79 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.08 1.46 7.18 -51.93 -0.37 1.08 16 45 H 0.02 0.43 7.31 -51.93 -0.38 0.05 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.38 10.22 6.85 -40.82 -0.28 9.94 16 48 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 49 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.09 0.33 6.88 -51.93 -0.36 -0.03 16 LS Contribution 408.81 15.07 6.16 6.16 Total: -1.00 -34.66 408.81 -9.15 -43.81 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -8.78 Total: 10.97 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -1.92 Total: -4.40 kcal Atomic # 7 Polarization: -64.72 SS G_CDS: 0.32 Total: -64.40 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.66 -9.15 -43.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754350377.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.647 kcal (2) G-P(sol) polarization free energy of solvation -34.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds