Wall clock time and date at job start Tue Mar 31 2020 18:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47325 * 2 1 4 4 C 1.35367 * 126.38517 * 85.13482 * 3 2 1 5 5 C 1.41499 * 105.50090 * 180.26198 * 4 3 2 6 6 C 1.47713 * 126.51667 * 179.76388 * 5 4 3 7 7 O 1.21576 * 119.99922 * 359.97412 * 6 5 4 8 8 N 1.34777 * 120.00116 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99868 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47723 * 324.99662 * 9 8 6 11 11 C 1.53007 * 109.47249 * 84.99762 * 9 8 6 12 12 C 1.53003 * 109.46702 * 59.99990 * 11 9 8 13 13 C 1.52994 * 109.47404 * 60.00121 * 12 11 9 14 14 C 1.52995 * 109.46996 * 299.99886 * 13 12 11 15 15 C 1.52997 * 109.47472 * 60.00167 * 14 13 12 16 16 H 1.08997 * 109.47484 * 59.99797 * 15 14 13 17 17 C 1.52998 * 109.47136 * 180.02562 * 15 14 13 18 18 N 1.46503 * 109.47139 * 294.99412 * 17 15 14 19 19 C 1.36932 * 119.99882 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00340 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99984 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00142 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99894 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47160 * 89.99366 * 23 21 19 25 25 H 1.48496 * 109.47130 * 209.99782 * 23 21 19 26 26 H 1.48504 * 109.46725 * 329.99534 * 23 21 19 27 27 N 1.31803 * 106.96513 * 359.76674 * 5 4 3 28 28 N 1.28464 * 110.07402 * 359.97438 * 27 5 4 29 29 C 1.46506 * 124.88268 * 179.97438 * 28 27 5 30 30 H 1.09006 * 109.47373 * 299.99877 * 1 2 3 31 31 H 1.08998 * 109.47568 * 59.99517 * 1 2 3 32 32 H 1.08996 * 109.47384 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46918 * 240.00302 * 2 1 3 34 34 H 1.08998 * 109.47568 * 120.00483 * 2 1 3 35 35 H 1.08001 * 127.24575 * 0.02562 * 4 3 2 36 36 H 0.97000 * 119.99590 * 359.97438 * 8 6 5 37 37 H 1.09003 * 109.47044 * 179.97438 * 11 9 8 38 38 H 1.08996 * 109.47278 * 299.99748 * 11 9 8 39 39 H 1.09003 * 109.47140 * 299.99658 * 12 11 9 40 40 H 1.09004 * 109.46715 * 180.02562 * 12 11 9 41 41 H 1.09003 * 109.47237 * 179.97438 * 13 12 11 42 42 H 1.09003 * 109.47350 * 59.99665 * 13 12 11 43 43 H 1.08997 * 109.47455 * 299.99674 * 14 13 12 44 44 H 1.09005 * 109.46944 * 180.02562 * 14 13 12 45 45 H 1.08999 * 109.47785 * 55.00004 * 17 15 14 46 46 H 1.09005 * 109.47369 * 174.99808 * 17 15 14 47 47 H 0.96998 * 119.99860 * 0.02562 * 18 17 15 48 48 H 0.97007 * 119.99804 * 180.02562 * 22 21 19 49 49 H 1.09001 * 109.47060 * 90.03349 * 29 28 27 50 50 H 1.09004 * 109.47073 * 210.02838 * 29 28 27 51 51 H 1.09000 * 109.47212 * 330.02920 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2129 2.2087 1.0858 5 6 2.6881 3.4429 0.5827 6 6 3.0324 4.6411 1.3751 7 8 2.9154 4.6239 2.5851 8 7 3.4763 5.7533 0.7566 9 6 3.8172 6.9417 1.5425 10 1 3.1402 7.0216 2.3929 11 6 5.2572 6.8242 2.0463 12 6 6.2076 6.7122 0.8524 13 6 6.0742 7.9589 -0.0244 14 6 4.6343 8.0764 -0.5281 15 6 3.6839 8.1885 0.6656 16 1 3.9375 9.0727 1.2503 17 6 2.2439 8.3053 0.1618 18 7 2.0858 9.5596 -0.5784 19 6 0.8736 9.8827 -1.1271 20 1 0.0338 9.2130 -1.0139 21 6 0.7236 11.0714 -1.8281 22 7 -0.4418 11.3822 -2.3551 23 14 2.1758 12.2301 -2.0234 24 1 2.9223 11.8842 -3.2597 25 1 1.6844 13.6283 -2.1167 26 1 3.0751 12.0988 -0.8490 27 7 2.7650 3.3202 -0.7273 28 7 2.3890 2.1444 -1.0829 29 6 2.3465 1.6605 -2.4651 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.0289 1.9509 2.1184 36 1 3.5699 5.7668 -0.2087 37 1 5.5110 7.7087 2.6306 38 1 5.3522 5.9361 2.6710 39 1 5.9539 5.8279 0.2678 40 1 7.2334 6.6281 1.2114 41 1 6.7516 7.8793 -0.8746 42 1 6.3278 8.8432 0.5603 43 1 4.3806 7.1922 -1.1128 44 1 4.5394 8.9643 -1.1532 45 1 2.0194 7.4650 -0.4950 46 1 1.5601 8.2957 1.0106 47 1 2.8401 10.1609 -0.6805 48 1 -0.5464 12.2127 -2.8452 49 1 3.3031 1.2042 -2.7198 50 1 1.5525 0.9206 -2.5667 51 1 2.1523 2.4966 -3.1369 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754350378.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:06 Heat of formation + Delta-G solvation = 33.547666 kcal Electronic energy + Delta-G solvation = -29655.061339 eV Core-core repulsion = 25783.614098 eV Total energy + Delta-G solvation = -3871.447241 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.95 seconds Orbital eigenvalues (eV) -42.83761 -40.10737 -38.00162 -34.78736 -34.72706 -33.63385 -33.44048 -31.91579 -30.10777 -29.93520 -29.41354 -27.55153 -25.42751 -24.05444 -23.51471 -22.64309 -22.00635 -21.09299 -20.65235 -19.86730 -18.86257 -17.72196 -17.28585 -16.62627 -16.50306 -15.61143 -15.22997 -14.91915 -14.89528 -14.46124 -14.36398 -13.99968 -13.97594 -13.73094 -13.64115 -13.42371 -13.17252 -12.90917 -12.76809 -12.74478 -12.63783 -12.22631 -12.06702 -11.93963 -11.70676 -11.54459 -11.53487 -11.04824 -10.93641 -10.88574 -10.75043 -10.40609 -10.22939 -10.01257 -9.93757 -9.85366 -9.53384 -9.25946 -9.08212 -8.88213 -8.76830 -7.17933 -5.73063 -3.07837 1.54000 1.97660 2.27240 3.30498 3.39070 3.41517 3.46874 3.52297 4.14239 4.24320 4.54481 4.62011 4.70447 4.73017 4.80029 4.87189 4.87816 4.90677 5.02093 5.12708 5.16985 5.20819 5.30940 5.37109 5.48068 5.53828 5.56616 5.58584 5.60191 5.65177 5.73194 5.78254 5.80098 5.84084 5.85925 6.05112 6.14099 6.18271 6.24218 6.28605 6.33428 6.45977 6.54365 6.58342 6.64818 6.77616 6.85506 7.57902 7.87301 8.04346 8.35701 8.46115 9.25732 9.97954 10.18436 11.45659 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011042 B = 0.003193 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.177145 B = 8766.662505 C =10182.594832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.052 4.052 3 C 0.009 3.991 4 C -0.177 4.177 5 C -0.012 4.012 6 C 0.605 3.395 7 O -0.538 6.538 8 N -0.702 5.702 9 C 0.155 3.845 10 H 0.091 0.909 11 C -0.128 4.128 12 C -0.116 4.116 13 C -0.120 4.120 14 C -0.113 4.113 15 C -0.105 4.105 16 H 0.086 0.914 17 C 0.163 3.837 18 N -0.754 5.754 19 C -0.240 4.240 20 H 0.089 0.911 21 C 0.003 3.997 22 N -0.936 5.936 23 Si 0.884 3.116 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.277 1.277 27 N -0.258 5.258 28 N -0.280 5.280 29 C 0.084 3.916 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.160 0.840 36 H 0.407 0.593 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.028 0.972 46 H 0.027 0.973 47 H 0.360 0.640 48 H 0.259 0.741 49 H 0.084 0.916 50 H 0.094 0.906 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.076 -24.194 3.276 26.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.091 4.091 3 C -0.115 4.115 4 C -0.205 4.205 5 C -0.172 4.172 6 C 0.389 3.611 7 O -0.414 6.414 8 N -0.354 5.354 9 C 0.050 3.950 10 H 0.109 0.891 11 C -0.167 4.167 12 C -0.154 4.154 13 C -0.158 4.158 14 C -0.151 4.151 15 C -0.125 4.125 16 H 0.104 0.896 17 C 0.036 3.964 18 N -0.400 5.400 19 C -0.370 4.370 20 H 0.107 0.893 21 C -0.193 4.193 22 N -0.584 5.584 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.203 1.203 27 N -0.094 5.094 28 N -0.069 5.069 29 C -0.057 4.057 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.178 0.822 36 H 0.244 0.756 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.046 0.954 46 H 0.045 0.955 47 H 0.193 0.807 48 H 0.069 0.931 49 H 0.102 0.898 50 H 0.112 0.888 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.043 -23.645 2.981 26.267 hybrid contribution 0.707 0.547 -0.166 0.909 sum 11.750 -23.099 2.814 26.068 Atomic orbital electron populations 1.21781 0.93951 1.02164 1.02861 1.20095 0.96495 0.88766 1.03745 1.21377 1.06164 0.97017 0.86902 1.21475 1.07020 0.92386 0.99573 1.21918 1.08667 0.96804 0.89835 1.16865 0.76644 0.81277 0.86288 1.90771 1.54387 1.83017 1.13177 1.45957 1.65730 1.12278 1.11448 1.20970 0.96011 0.83595 0.94389 0.89075 1.21912 0.94534 1.02435 0.97795 1.21490 0.98717 0.98335 0.96839 1.21581 0.97019 0.98023 0.99174 1.21556 0.93556 1.02540 0.97426 1.21675 0.97195 0.96893 0.96701 0.89616 1.20635 0.91888 0.89302 0.94565 1.42713 1.10902 1.20783 1.65607 1.19071 0.88345 1.03592 1.26002 0.89345 1.24666 0.96419 0.97846 1.00347 1.69708 1.22466 1.25260 1.40999 0.86551 0.83012 0.81173 0.77851 1.21127 1.21786 1.20293 1.73559 1.18391 1.02466 1.14963 1.45298 1.45705 1.08058 1.07814 1.22173 1.04036 1.01747 0.77700 0.91762 0.92669 0.91758 0.90806 0.89167 0.82226 0.75629 0.90975 0.91521 0.92128 0.92439 0.92246 0.91976 0.92137 0.91030 0.95434 0.95540 0.80663 0.93137 0.89756 0.88762 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.15 0.37 -0.50 16 2 C -0.05 -0.31 6.00 -27.88 -0.17 -0.47 16 3 C 0.01 0.09 6.17 -82.21 -0.51 -0.42 16 4 C -0.18 -2.18 10.73 -39.36 -0.42 -2.60 16 5 C -0.01 -0.18 7.13 -82.77 -0.59 -0.77 16 6 C 0.60 9.57 7.79 -12.39 -0.10 9.47 16 7 O -0.54 -9.74 16.59 5.30 0.09 -9.66 16 8 N -0.70 -10.15 3.61 -54.79 -0.20 -10.35 16 9 C 0.16 2.21 2.23 -67.93 -0.15 2.06 16 10 H 0.09 1.43 7.58 -51.93 -0.39 1.03 16 11 C -0.13 -1.57 5.60 -26.73 -0.15 -1.72 16 12 C -0.12 -1.31 5.76 -26.73 -0.15 -1.46 16 13 C -0.12 -1.42 5.92 -26.74 -0.16 -1.57 16 14 C -0.11 -1.61 4.90 -26.74 -0.13 -1.74 16 15 C -0.11 -1.63 2.02 -90.62 -0.18 -1.81 16 16 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 17 C 0.16 3.26 5.42 -4.04 -0.02 3.24 16 18 N -0.75 -18.19 5.13 -59.91 -0.31 -18.50 16 19 C -0.24 -6.96 10.47 -15.06 -0.16 -7.12 16 20 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 21 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 22 N -0.94 -29.92 13.97 55.49 0.78 -29.15 16 23 Si 0.88 22.37 27.74 -169.99 -4.71 17.65 16 24 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 27 N -0.26 -3.47 11.67 33.42 0.39 -3.08 16 28 N -0.28 -2.91 3.70 -63.84 -0.24 -3.15 16 29 C 0.08 0.49 10.90 59.85 0.65 1.14 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.30 7.42 -51.93 -0.39 -0.09 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.16 1.81 8.06 -52.49 -0.42 1.38 16 36 H 0.41 5.75 6.39 -40.82 -0.26 5.49 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.71 7.60 -51.93 -0.39 0.32 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.85 6.51 -51.93 -0.34 0.51 16 44 H 0.07 1.15 7.18 -51.93 -0.37 0.77 16 45 H 0.03 0.57 7.61 -51.93 -0.39 0.17 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.36 8.40 4.71 -40.82 -0.19 8.20 16 48 H 0.26 7.85 8.31 -40.82 -0.34 7.52 16 49 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 50 H 0.09 0.32 7.43 -51.93 -0.39 -0.07 16 51 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 402.28 15.07 6.06 6.06 Total: -1.00 -35.66 402.28 -8.74 -44.39 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -8.63 Total: 10.06 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -1.97 Total: -4.30 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: 0.42 Total: -64.22 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.71 Total: 17.65 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.66 -8.74 -44.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754350378.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.941 kcal (2) G-P(sol) polarization free energy of solvation -35.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.95 seconds