Wall clock time and date at job start Tue Mar 31 2020 18:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47325 * 2 1 4 4 C 1.35367 * 126.38517 * 85.13482 * 3 2 1 5 5 C 1.41499 * 105.50090 * 180.26198 * 4 3 2 6 6 C 1.47713 * 126.51667 * 179.76388 * 5 4 3 7 7 O 1.21576 * 119.99922 * 359.97412 * 6 5 4 8 8 N 1.34777 * 120.00116 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99868 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47723 * 324.99662 * 9 8 6 11 11 C 1.53007 * 109.47249 * 84.99762 * 9 8 6 12 12 C 1.53003 * 109.46702 * 59.99990 * 11 9 8 13 13 C 1.52994 * 109.47404 * 60.00121 * 12 11 9 14 14 C 1.52995 * 109.46996 * 299.99886 * 13 12 11 15 15 C 1.52997 * 109.47472 * 60.00167 * 14 13 12 16 16 H 1.08997 * 109.47484 * 59.99797 * 15 14 13 17 17 C 1.52998 * 109.47136 * 180.02562 * 15 14 13 18 18 N 1.46503 * 109.47139 * 294.99412 * 17 15 14 19 19 C 1.36932 * 119.99882 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00340 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99984 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00142 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99894 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47160 * 89.99366 * 23 21 19 25 25 H 1.48496 * 109.47130 * 209.99782 * 23 21 19 26 26 H 1.48504 * 109.46725 * 329.99534 * 23 21 19 27 27 N 1.31803 * 106.96513 * 359.76674 * 5 4 3 28 28 N 1.28464 * 110.07402 * 359.97438 * 27 5 4 29 29 C 1.46506 * 124.88268 * 179.97438 * 28 27 5 30 30 H 1.09006 * 109.47373 * 299.99877 * 1 2 3 31 31 H 1.08998 * 109.47568 * 59.99517 * 1 2 3 32 32 H 1.08996 * 109.47384 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46918 * 240.00302 * 2 1 3 34 34 H 1.08998 * 109.47568 * 120.00483 * 2 1 3 35 35 H 1.08001 * 127.24575 * 0.02562 * 4 3 2 36 36 H 0.97000 * 119.99590 * 359.97438 * 8 6 5 37 37 H 1.09003 * 109.47044 * 179.97438 * 11 9 8 38 38 H 1.08996 * 109.47278 * 299.99748 * 11 9 8 39 39 H 1.09003 * 109.47140 * 299.99658 * 12 11 9 40 40 H 1.09004 * 109.46715 * 180.02562 * 12 11 9 41 41 H 1.09003 * 109.47237 * 179.97438 * 13 12 11 42 42 H 1.09003 * 109.47350 * 59.99665 * 13 12 11 43 43 H 1.08997 * 109.47455 * 299.99674 * 14 13 12 44 44 H 1.09005 * 109.46944 * 180.02562 * 14 13 12 45 45 H 1.08999 * 109.47785 * 55.00004 * 17 15 14 46 46 H 1.09005 * 109.47369 * 174.99808 * 17 15 14 47 47 H 0.96998 * 119.99860 * 0.02562 * 18 17 15 48 48 H 0.97007 * 119.99804 * 180.02562 * 22 21 19 49 49 H 1.09001 * 109.47060 * 90.03349 * 29 28 27 50 50 H 1.09004 * 109.47073 * 210.02838 * 29 28 27 51 51 H 1.09000 * 109.47212 * 330.02920 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2129 2.2087 1.0858 5 6 2.6881 3.4429 0.5827 6 6 3.0324 4.6411 1.3751 7 8 2.9154 4.6239 2.5851 8 7 3.4763 5.7533 0.7566 9 6 3.8172 6.9417 1.5425 10 1 3.1402 7.0216 2.3929 11 6 5.2572 6.8242 2.0463 12 6 6.2076 6.7122 0.8524 13 6 6.0742 7.9589 -0.0244 14 6 4.6343 8.0764 -0.5281 15 6 3.6839 8.1885 0.6656 16 1 3.9375 9.0727 1.2503 17 6 2.2439 8.3053 0.1618 18 7 2.0858 9.5596 -0.5784 19 6 0.8736 9.8827 -1.1271 20 1 0.0338 9.2130 -1.0139 21 6 0.7236 11.0714 -1.8281 22 7 -0.4418 11.3822 -2.3551 23 14 2.1758 12.2301 -2.0234 24 1 2.9223 11.8842 -3.2597 25 1 1.6844 13.6283 -2.1167 26 1 3.0751 12.0988 -0.8490 27 7 2.7650 3.3202 -0.7273 28 7 2.3890 2.1444 -1.0829 29 6 2.3465 1.6605 -2.4651 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.0289 1.9509 2.1184 36 1 3.5699 5.7668 -0.2087 37 1 5.5110 7.7087 2.6306 38 1 5.3522 5.9361 2.6710 39 1 5.9539 5.8279 0.2678 40 1 7.2334 6.6281 1.2114 41 1 6.7516 7.8793 -0.8746 42 1 6.3278 8.8432 0.5603 43 1 4.3806 7.1922 -1.1128 44 1 4.5394 8.9643 -1.1532 45 1 2.0194 7.4650 -0.4950 46 1 1.5601 8.2957 1.0106 47 1 2.8401 10.1609 -0.6805 48 1 -0.5464 12.2127 -2.8452 49 1 3.3031 1.2042 -2.7198 50 1 1.5525 0.9206 -2.5667 51 1 2.1523 2.4966 -3.1369 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754350378.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:56 Heat of formation + Delta-G solvation = 9.995731 kcal Electronic energy + Delta-G solvation = -29656.082628 eV Core-core repulsion = 25783.614098 eV Total energy + Delta-G solvation = -3872.468530 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 5.88 seconds Orbital eigenvalues (eV) -43.71321 -41.31056 -39.25332 -36.63804 -35.39849 -34.66812 -34.27836 -33.88268 -31.65502 -31.08678 -30.23361 -28.35942 -27.07609 -24.76012 -24.44182 -24.33252 -23.16800 -22.17676 -21.94819 -20.91527 -19.99670 -19.70888 -18.25502 -17.59662 -17.33076 -16.85397 -16.56279 -16.42488 -15.94102 -15.64217 -15.49203 -15.31614 -15.07771 -14.84129 -14.79076 -14.64097 -14.25450 -14.14226 -13.83360 -13.71390 -13.43719 -13.25389 -13.15811 -13.06160 -12.95776 -12.74882 -12.60865 -12.49745 -12.13979 -12.06557 -11.95804 -11.86560 -11.71733 -11.45689 -11.27168 -11.19111 -11.06101 -10.91818 -10.23257 -9.94864 -9.91948 -9.32246 -8.04768 -5.38980 0.51449 1.09796 1.36340 1.40987 1.48423 1.55860 2.18898 2.36989 2.47089 3.26067 3.31340 3.42080 3.60769 3.73599 3.80230 3.89053 3.94227 4.15408 4.20558 4.29045 4.33076 4.40974 4.41763 4.43945 4.48633 4.53713 4.54530 4.63607 4.64072 4.69663 4.71849 4.79110 4.87698 4.98853 5.05230 5.05526 5.13646 5.17539 5.23799 5.27086 5.31096 5.32530 5.38121 5.40341 5.47602 5.58566 5.71925 5.86955 6.18714 6.43211 6.88987 7.05397 7.16190 7.79750 8.02564 9.17124 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011042 B = 0.003193 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.177145 B = 8766.662505 C =10182.594832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.049 4.049 3 C 0.026 3.974 4 C -0.203 4.203 5 C -0.043 4.043 6 C 0.601 3.399 7 O -0.570 6.570 8 N -0.697 5.697 9 C 0.157 3.843 10 H 0.072 0.928 11 C -0.121 4.121 12 C -0.110 4.110 13 C -0.112 4.112 14 C -0.112 4.112 15 C -0.091 4.091 16 H 0.095 0.905 17 C 0.164 3.836 18 N -0.751 5.751 19 C -0.239 4.239 20 H 0.047 0.953 21 C -0.064 4.064 22 N -0.985 5.985 23 Si 0.959 3.041 24 H -0.273 1.273 25 H -0.295 1.295 26 H -0.248 1.248 27 N -0.278 5.278 28 N -0.276 5.276 29 C 0.071 3.929 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.160 0.840 36 H 0.409 0.591 37 H 0.088 0.912 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.019 0.981 46 H 0.009 0.991 47 H 0.369 0.631 48 H 0.259 0.741 49 H 0.107 0.893 50 H 0.124 0.876 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.922 -25.448 2.591 29.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.100 4.100 4 C -0.231 4.231 5 C -0.202 4.202 6 C 0.387 3.613 7 O -0.449 6.449 8 N -0.348 5.348 9 C 0.052 3.948 10 H 0.090 0.910 11 C -0.159 4.159 12 C -0.148 4.148 13 C -0.150 4.150 14 C -0.149 4.149 15 C -0.111 4.111 16 H 0.113 0.887 17 C 0.038 3.962 18 N -0.397 5.397 19 C -0.370 4.370 20 H 0.065 0.935 21 C -0.255 4.255 22 N -0.635 5.635 23 Si 0.785 3.215 24 H -0.199 1.199 25 H -0.222 1.222 26 H -0.173 1.173 27 N -0.116 5.116 28 N -0.065 5.065 29 C -0.068 4.068 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.178 0.822 36 H 0.246 0.754 37 H 0.106 0.894 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.037 0.963 46 H 0.027 0.973 47 H 0.203 0.797 48 H 0.068 0.932 49 H 0.125 0.875 50 H 0.142 0.858 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.926 -24.925 2.296 28.643 hybrid contribution -0.327 0.789 -0.003 0.854 sum 13.599 -24.136 2.293 27.798 Atomic orbital electron populations 1.21773 0.93781 1.03269 1.01808 1.20283 0.96408 0.86251 1.05802 1.21922 1.03978 0.98224 0.85831 1.21673 1.08369 0.92429 1.00638 1.21840 1.10720 0.97052 0.90546 1.17145 0.76128 0.81936 0.86116 1.90732 1.55939 1.83721 1.14469 1.45936 1.65305 1.12088 1.11457 1.20939 0.97379 0.82986 0.93447 0.90975 1.21856 0.92914 1.02798 0.98360 1.21455 0.99420 0.97875 0.96040 1.21533 0.95021 0.98559 0.99865 1.21539 0.95134 1.01813 0.96445 1.21538 0.94164 0.97830 0.97524 0.88722 1.20703 0.94978 0.87277 0.93260 1.42620 1.09405 1.22165 1.65540 1.18997 0.89048 1.02972 1.25941 0.93456 1.25565 0.99811 0.99886 1.00246 1.69905 1.25324 1.26033 1.42288 0.85355 0.79291 0.77747 0.79101 1.19925 1.22171 1.17273 1.73487 1.19395 1.04234 1.14436 1.45784 1.43984 1.07160 1.09539 1.22620 1.06513 1.02394 0.75223 0.93475 0.93131 0.89552 0.87925 0.87931 0.82211 0.75420 0.89389 0.92339 0.92823 0.90351 0.90716 0.90939 0.92361 0.92335 0.96326 0.97295 0.79703 0.93240 0.87464 0.85810 0.88515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.89 71.98 0.71 -0.71 16 2 C -0.05 -0.45 6.00 29.85 0.18 -0.27 16 3 C 0.03 0.47 6.17 41.40 0.26 0.73 16 4 C -0.20 -5.15 10.73 22.41 0.24 -4.91 16 5 C -0.04 -1.30 7.13 42.46 0.30 -1.00 16 6 C 0.60 20.00 7.79 86.75 0.68 20.68 16 7 O -0.57 -21.81 16.59 -3.95 -0.07 -21.87 16 8 N -0.70 -20.78 3.61 -445.52 -1.61 -22.38 16 9 C 0.16 4.50 2.23 45.00 0.10 4.60 16 10 H 0.07 2.35 7.58 -2.39 -0.02 2.33 16 11 C -0.12 -2.79 5.60 30.60 0.17 -2.62 16 12 C -0.11 -2.20 5.76 30.59 0.18 -2.02 16 13 C -0.11 -2.29 5.92 30.59 0.18 -2.11 16 14 C -0.11 -3.00 4.90 30.59 0.15 -2.85 16 15 C -0.09 -2.77 2.02 -10.79 -0.02 -2.79 16 16 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 17 C 0.16 6.72 5.42 86.38 0.47 7.19 16 18 N -0.75 -36.33 5.13 -343.44 -1.76 -38.09 16 19 C -0.24 -14.23 10.47 84.04 0.88 -13.35 16 20 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 21 C -0.06 -3.86 5.50 84.86 0.47 -3.39 16 22 N -0.99 -64.66 13.97 21.65 0.30 -64.36 16 23 Si 0.96 45.86 27.74 68.60 1.90 47.77 16 24 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 25 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 26 H -0.25 -10.62 6.52 99.48 0.65 -9.97 16 27 N -0.28 -7.57 11.67 -48.18 -0.56 -8.13 16 28 N -0.28 -5.44 3.70 -355.90 -1.32 -6.76 16 29 C 0.07 0.66 10.90 127.77 1.39 2.05 16 30 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.10 0.40 7.42 -2.39 -0.02 0.38 16 34 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 36 H 0.41 11.86 6.39 -92.71 -0.59 11.26 16 37 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.05 1.16 7.60 -2.39 -0.02 1.14 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.06 1.58 6.51 -2.39 -0.02 1.57 16 44 H 0.06 1.75 7.18 -2.38 -0.02 1.73 16 45 H 0.02 0.80 7.61 -2.39 -0.02 0.78 16 46 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 47 H 0.37 16.59 4.71 -92.71 -0.44 16.15 16 48 H 0.26 16.07 8.31 -92.70 -0.77 15.30 16 49 H 0.11 0.55 8.14 -2.39 -0.02 0.54 16 50 H 0.12 0.42 7.43 -2.38 -0.02 0.40 16 51 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -80.96 402.28 3.06 -77.90 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: -0.16 Total: 36.69 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 6.33 Total: -0.77 kcal Atomic # 7 Polarization: -134.77 SS G_CDS: -4.95 Total: -139.72 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.07 Total: -21.87 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.90 Total: 47.77 kcal Total: -80.96 3.06 -77.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754350378.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.899 kcal (2) G-P(sol) polarization free energy of solvation -80.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.88 seconds