Wall clock time and date at job start Tue Mar 31 2020 18:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.35358 * 126.38606 * 85.02813 * 3 2 1 5 5 C 1.41504 * 105.50482 * 180.02562 * 4 3 2 6 6 C 1.47705 * 126.52072 * 179.97438 * 5 4 3 7 7 O 1.21573 * 119.99987 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00329 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00234 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47210 * 325.00066 * 9 8 6 11 11 C 1.53002 * 109.47088 * 85.00347 * 9 8 6 12 12 C 1.53002 * 109.47155 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46997 * 299.99661 * 12 11 9 14 14 C 1.53006 * 109.46952 * 60.00548 * 13 12 11 15 15 C 1.53000 * 109.47313 * 205.00275 * 9 8 6 16 16 H 1.09006 * 109.47224 * 300.00297 * 15 9 8 17 17 C 1.52995 * 109.47243 * 60.00059 * 15 9 8 18 18 N 1.46495 * 109.47553 * 185.00432 * 17 15 9 19 19 C 1.36937 * 120.00597 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99927 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00572 * 179.97438 * 19 18 17 22 22 N 1.31613 * 120.00263 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99587 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.46660 * 90.00438 * 23 21 19 25 25 H 1.48501 * 109.47082 * 210.00227 * 23 21 19 26 26 H 1.48497 * 109.47265 * 330.00328 * 23 21 19 27 27 N 1.31809 * 106.96053 * 359.97438 * 5 4 3 28 28 N 1.28467 * 110.07486 * 359.72231 * 27 5 4 29 29 C 1.46507 * 124.88747 * 180.29573 * 28 27 5 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 32 32 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 34 34 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 35 35 H 1.08003 * 127.24902 * 0.02562 * 4 3 2 36 36 H 0.97006 * 119.99922 * 0.02562 * 8 6 5 37 37 H 1.09001 * 109.46935 * 300.00117 * 11 9 8 38 38 H 1.09006 * 109.46904 * 60.00037 * 11 9 8 39 39 H 1.09002 * 109.47203 * 59.99682 * 12 11 9 40 40 H 1.09003 * 109.47278 * 179.97438 * 12 11 9 41 41 H 1.09002 * 109.47039 * 179.97438 * 13 12 11 42 42 H 1.08998 * 109.47866 * 300.00170 * 13 12 11 43 43 H 1.08994 * 109.47564 * 59.99427 * 14 13 12 44 44 H 1.08999 * 109.46864 * 180.02562 * 14 13 12 45 45 H 1.09000 * 109.47295 * 305.00060 * 17 15 9 46 46 H 1.08997 * 109.47172 * 65.00048 * 17 15 9 47 47 H 0.97007 * 120.00360 * 359.97438 * 18 17 15 48 48 H 0.97004 * 120.00420 * 179.97438 * 22 21 19 49 49 H 1.08997 * 109.46916 * 270.19004 * 29 28 27 50 50 H 1.08999 * 109.46821 * 30.18843 * 29 28 27 51 51 H 1.08999 * 109.46872 * 150.18477 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2109 2.2094 1.0856 5 6 2.6922 3.4415 0.5831 6 6 3.0412 4.6380 1.3758 7 8 2.9230 4.6213 2.5856 8 7 3.4907 5.7482 0.7579 9 6 3.8363 6.9351 1.5440 10 1 3.1588 7.0179 2.3939 11 6 5.2752 6.8111 2.0490 12 6 5.6360 8.0503 2.8707 13 6 5.5089 9.2980 1.9943 14 6 4.0699 9.4221 1.4894 15 6 3.7093 8.1825 0.6672 16 1 4.3867 8.0997 -0.1827 17 6 2.2704 8.3065 0.1622 18 7 2.1759 9.4311 -0.7719 19 6 0.9757 9.7372 -1.3559 20 1 0.0988 9.1493 -1.1282 21 6 0.8861 10.8031 -2.2406 22 7 -0.2676 11.0976 -2.8015 23 14 2.4026 11.8204 -2.6339 24 1 3.1041 11.2316 -3.8029 25 1 1.9959 13.2131 -2.9507 26 1 3.3133 11.8253 -1.4610 27 7 2.7698 3.3185 -0.7270 28 7 2.3939 2.1426 -1.0825 29 6 2.3584 1.6561 -2.4640 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 2.0251 1.9523 2.1180 36 1 3.5846 5.7617 -0.2075 37 1 5.3657 5.9224 2.6737 38 1 5.9527 6.7283 1.1991 39 1 4.9585 8.1327 3.7205 40 1 6.6610 7.9618 3.2308 41 1 5.7655 10.1809 2.5798 42 1 6.1863 9.2157 1.1444 43 1 3.3924 9.5044 2.3392 44 1 3.9795 10.3107 0.8646 45 1 1.9834 7.3864 -0.3468 46 1 1.6026 8.4783 1.0064 47 1 2.9634 9.9595 -0.9762 48 1 -0.3303 11.8427 -3.4195 49 1 1.3846 1.8758 -2.9016 50 1 3.1373 2.1515 -3.0437 51 1 2.5270 0.5793 -2.4744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754350379.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:19 Heat of formation + Delta-G solvation = 30.901823 kcal Electronic energy + Delta-G solvation = -29343.959096 eV Core-core repulsion = 25472.397123 eV Total energy + Delta-G solvation = -3871.561974 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.82737 -39.89953 -38.05422 -34.75645 -34.72204 -34.01121 -33.53821 -31.89527 -29.99698 -29.83969 -29.30786 -27.48570 -25.42642 -24.06414 -23.57606 -22.63544 -21.62252 -20.91319 -20.64217 -20.07257 -19.21820 -17.73282 -17.28313 -16.51873 -16.45602 -16.02414 -14.93256 -14.90831 -14.66422 -14.45923 -14.37303 -14.18513 -13.94702 -13.67438 -13.61584 -13.36026 -13.12993 -12.93096 -12.89360 -12.70920 -12.59509 -12.47928 -12.01262 -11.93605 -11.62111 -11.50089 -11.16678 -11.01550 -10.93650 -10.87560 -10.75708 -10.46827 -10.30237 -10.10416 -9.97245 -9.83834 -9.53642 -9.25358 -9.07199 -8.88916 -8.76237 -7.17805 -5.73053 -3.07821 1.54847 1.98261 2.28016 3.27445 3.38804 3.41334 3.46723 3.51723 4.15570 4.24444 4.52184 4.61916 4.68943 4.74243 4.78404 4.89703 4.90234 5.00470 5.03724 5.15121 5.19184 5.21177 5.32249 5.39876 5.49207 5.54158 5.54693 5.59401 5.60616 5.63160 5.69563 5.79370 5.83094 5.84934 5.89572 6.11797 6.14831 6.21250 6.24718 6.29825 6.33076 6.50997 6.55379 6.58654 6.63711 6.76649 6.87604 7.57460 7.87538 8.04378 8.34625 8.46083 9.25713 9.97939 10.18458 11.45681 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009753 B = 0.003281 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.239994 B = 8531.809718 C =10643.669459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.052 4.052 3 C 0.009 3.991 4 C -0.177 4.177 5 C -0.013 4.013 6 C 0.606 3.394 7 O -0.538 6.538 8 N -0.707 5.707 9 C 0.155 3.845 10 H 0.091 0.909 11 C -0.126 4.126 12 C -0.114 4.114 13 C -0.122 4.122 14 C -0.109 4.109 15 C -0.104 4.104 16 H 0.074 0.926 17 C 0.162 3.838 18 N -0.754 5.754 19 C -0.240 4.240 20 H 0.089 0.911 21 C 0.003 3.997 22 N -0.936 5.936 23 Si 0.884 3.116 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.277 1.277 27 N -0.257 5.257 28 N -0.280 5.280 29 C 0.084 3.916 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.160 0.840 36 H 0.408 0.592 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.029 0.971 46 H 0.027 0.973 47 H 0.360 0.640 48 H 0.259 0.741 49 H 0.086 0.914 50 H 0.098 0.902 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.321 -22.541 5.932 25.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.091 4.091 3 C -0.115 4.115 4 C -0.205 4.205 5 C -0.173 4.173 6 C 0.391 3.609 7 O -0.413 6.413 8 N -0.357 5.357 9 C 0.050 3.950 10 H 0.109 0.891 11 C -0.165 4.165 12 C -0.152 4.152 13 C -0.159 4.159 14 C -0.147 4.147 15 C -0.123 4.123 16 H 0.093 0.907 17 C 0.035 3.965 18 N -0.400 5.400 19 C -0.370 4.370 20 H 0.106 0.894 21 C -0.193 4.193 22 N -0.584 5.584 23 Si 0.714 3.286 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.203 1.203 27 N -0.093 5.093 28 N -0.068 5.068 29 C -0.056 4.056 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.178 0.822 36 H 0.243 0.757 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.047 0.953 46 H 0.045 0.955 47 H 0.193 0.807 48 H 0.069 0.931 49 H 0.105 0.895 50 H 0.117 0.883 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.282 -22.000 5.643 24.931 hybrid contribution 0.740 0.419 -0.376 0.930 sum 11.022 -21.582 5.267 24.799 Atomic orbital electron populations 1.21772 0.93919 1.02148 1.02862 1.20102 0.96545 0.88742 1.03675 1.21376 1.06153 0.97051 0.86916 1.21469 1.07003 0.92417 0.99574 1.21906 1.08713 0.96847 0.89837 1.16851 0.76596 0.81207 0.86275 1.90771 1.54439 1.82899 1.13182 1.45938 1.65761 1.12586 1.11450 1.21006 0.96140 0.83259 0.94551 0.89112 1.21906 0.96176 0.98464 0.99967 1.21481 1.01103 0.94285 0.98361 1.21604 0.97443 0.97529 0.99367 1.21532 0.95695 0.97658 0.99813 1.21653 0.99180 0.93631 0.97866 0.90738 1.20653 0.92186 0.91126 0.92548 1.42710 1.09161 1.35042 1.53074 1.19071 0.87680 1.11386 1.18844 0.89352 1.24661 0.96380 0.98716 0.99514 1.69703 1.23238 1.31468 1.34029 0.86551 0.83574 0.80266 0.78161 1.21175 1.21798 1.20280 1.73574 1.18390 1.02395 1.14904 1.45306 1.45565 1.08087 1.07882 1.22173 1.05158 1.00758 0.77533 0.91778 0.91795 0.92633 0.89205 0.90828 0.82221 0.75680 0.91581 0.91914 0.91723 0.92107 0.92046 0.92115 0.91546 0.90891 0.95346 0.95518 0.80677 0.93140 0.89526 0.88349 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 37.16 0.37 -0.52 16 2 C -0.05 -0.31 6.21 -27.88 -0.17 -0.49 16 3 C 0.01 0.09 6.17 -82.21 -0.51 -0.42 16 4 C -0.18 -2.21 10.73 -39.37 -0.42 -2.63 16 5 C -0.01 -0.19 7.13 -82.77 -0.59 -0.78 16 6 C 0.61 9.72 7.79 -12.39 -0.10 9.62 16 7 O -0.54 -9.81 16.59 5.30 0.09 -9.72 16 8 N -0.71 -10.43 4.30 -54.79 -0.24 -10.66 16 9 C 0.16 2.24 1.90 -67.93 -0.13 2.11 16 10 H 0.09 1.45 7.58 -51.93 -0.39 1.06 16 11 C -0.13 -1.58 5.49 -26.73 -0.15 -1.73 16 12 C -0.11 -1.29 5.92 -26.73 -0.16 -1.45 16 13 C -0.12 -1.46 5.92 -26.73 -0.16 -1.62 16 14 C -0.11 -1.61 5.08 -26.70 -0.14 -1.75 16 15 C -0.10 -1.62 1.80 -90.59 -0.16 -1.79 16 16 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 17 C 0.16 3.25 5.56 -4.05 -0.02 3.23 16 18 N -0.75 -18.20 5.13 -59.91 -0.31 -18.51 16 19 C -0.24 -6.96 10.47 -15.06 -0.16 -7.11 16 20 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 21 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 22 N -0.94 -29.91 13.97 55.49 0.78 -29.13 16 23 Si 0.88 22.36 27.74 -169.99 -4.71 17.64 16 24 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 27 N -0.26 -3.53 11.67 33.42 0.39 -3.14 16 28 N -0.28 -2.98 3.70 -63.85 -0.24 -3.22 16 29 C 0.08 0.51 11.11 59.85 0.66 1.17 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.30 6.86 -51.93 -0.36 -0.05 16 35 H 0.16 1.82 8.06 -52.48 -0.42 1.40 16 36 H 0.41 5.83 8.12 -40.82 -0.33 5.49 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 45 H 0.03 0.59 7.30 -51.93 -0.38 0.21 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.36 8.40 4.71 -40.82 -0.19 8.21 16 48 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 49 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.09 0.29 6.87 -51.93 -0.36 -0.06 16 LS Contribution 405.70 15.07 6.11 6.11 Total: -1.00 -35.73 405.70 -8.79 -44.52 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -8.74 Total: 10.27 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -1.92 Total: -4.16 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: 0.39 Total: -64.66 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.71 Total: 17.64 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.73 -8.79 -44.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754350379.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.422 kcal (2) G-P(sol) polarization free energy of solvation -35.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds