Wall clock time and date at job start Tue Mar 31 2020 18:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 N 1.30496 * 125.64577 * 90.02138 * 3 2 1 5 5 C 1.34131 * 109.25387 * 180.02562 * 4 3 2 6 6 C 1.34670 * 108.02144 * 0.02562 * 5 4 3 7 7 N 1.35037 * 125.65176 * 269.72246 * 3 2 1 8 8 C 1.46504 * 126.39704 * 359.97438 * 7 3 2 9 9 H 1.08994 * 109.47036 * 0.02562 * 8 7 3 10 10 C 1.53001 * 109.47018 * 120.00220 * 8 7 3 11 11 C 1.52995 * 109.47244 * 240.00067 * 8 7 3 12 12 C 1.50697 * 109.47362 * 175.00149 * 11 8 7 13 13 O 1.21283 * 119.99996 * 0.02562 * 12 11 8 14 14 N 1.34776 * 120.00462 * 180.02562 * 12 11 8 15 15 C 1.46502 * 120.00299 * 179.97438 * 14 12 11 16 16 H 1.08997 * 109.47016 * 35.00181 * 15 14 12 17 17 C 1.53005 * 109.46946 * 155.00176 * 15 14 12 18 18 N 1.46502 * 109.47165 * 305.00289 * 17 15 14 19 19 C 1.36936 * 120.00197 * 180.02562 * 18 17 15 20 20 H 1.07996 * 119.99610 * 359.97438 * 19 18 17 21 21 C 1.38808 * 119.99968 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00211 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99806 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47452 * 59.99440 * 23 21 19 25 25 H 1.48500 * 109.47368 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47006 * 299.99453 * 23 21 19 27 27 C 1.53001 * 109.47120 * 274.99988 * 15 14 12 28 28 C 1.52999 * 117.49238 * 128.74774 * 27 15 14 29 29 C 1.53005 * 117.49773 * 60.08841 * 27 15 14 30 30 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 32 32 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 34 34 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 35 35 H 1.08004 * 125.98782 * 179.97438 * 5 4 3 36 36 H 1.07997 * 126.59386 * 179.97438 * 6 5 4 37 37 H 1.09004 * 109.47160 * 60.00158 * 10 8 7 38 38 H 1.08996 * 109.47496 * 180.02562 * 10 8 7 39 39 H 1.09005 * 109.46850 * 300.00147 * 10 8 7 40 40 H 1.09007 * 109.47034 * 295.00196 * 11 8 7 41 41 H 1.08999 * 109.46986 * 55.00031 * 11 8 7 42 42 H 0.97005 * 119.99530 * 0.02562 * 14 12 11 43 43 H 1.08995 * 109.47066 * 64.99770 * 17 15 14 44 44 H 1.08996 * 109.46951 * 185.00208 * 17 15 14 45 45 H 0.97008 * 119.99929 * 359.97438 * 18 17 15 46 46 H 0.97001 * 120.00364 * 180.02562 * 22 21 19 47 47 H 1.08994 * 115.55263 * 274.41345 * 27 15 14 48 48 H 1.09000 * 117.50452 * 359.97438 * 28 27 15 49 49 H 1.09003 * 117.49593 * 145.02226 * 28 27 15 50 50 H 1.08993 * 117.49816 * 214.97512 * 29 27 15 51 51 H 1.09005 * 117.49555 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2862 2.1377 1.0605 5 6 2.7145 3.3512 0.6819 6 6 2.7259 3.3877 -0.6642 7 7 2.2997 2.1611 -1.0973 8 6 2.1561 1.7330 -2.4910 9 1 1.7930 0.7057 -2.5199 10 6 1.1577 2.6466 -3.2048 11 6 3.5135 1.8145 -3.1920 12 6 3.3923 1.2592 -4.5877 13 8 2.3250 0.8399 -4.9829 14 7 4.4697 1.2284 -5.3968 15 6 4.3519 0.6880 -6.7534 16 1 3.3702 0.9337 -7.1583 17 6 5.4376 1.2990 -7.6417 18 7 5.3497 2.7603 -7.5853 19 6 6.2259 3.5273 -8.3058 20 1 6.9820 3.0549 -8.9153 21 6 6.1429 4.9118 -8.2518 22 7 5.2217 5.4874 -7.5086 23 14 7.3387 5.9581 -9.2341 24 1 7.1979 5.6462 -10.6792 25 1 7.0411 7.3951 -9.0071 26 1 8.7274 5.6647 -8.7974 27 6 4.5214 -0.8321 -6.7134 28 6 3.4502 -1.6805 -7.4015 29 6 3.5238 -1.6322 -5.8733 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.9994 4.1578 1.3412 36 1 3.0198 4.2226 -1.2831 37 1 1.5205 3.6741 -3.1759 38 1 1.0505 2.3279 -4.2416 39 1 0.1906 2.5885 -2.7053 40 1 3.8349 2.8549 -3.2416 41 1 4.2469 1.2340 -2.6324 42 1 5.3234 1.5634 -5.0805 43 1 6.4181 0.9801 -7.2884 44 1 5.2958 0.9659 -8.6698 45 1 4.6702 3.1845 -7.0381 46 1 5.1635 6.4550 -7.4712 47 1 5.5496 -1.1917 -6.7516 48 1 2.6246 -1.1559 -7.8824 49 1 3.7737 -2.5986 -7.8921 50 1 3.8957 -2.5184 -5.3591 51 1 2.7471 -1.0755 -5.3488 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754440574.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:08 Heat of formation + Delta-G solvation = 50.031770 kcal Electronic energy + Delta-G solvation = -29583.772252 eV Core-core repulsion = 25713.039815 eV Total energy + Delta-G solvation = -3870.732437 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 4.21 seconds Orbital eigenvalues (eV) -42.25182 -40.06757 -37.58255 -35.59590 -35.08516 -33.96393 -33.52028 -31.37366 -30.77537 -28.77589 -28.67958 -27.33080 -24.18662 -24.00892 -23.22541 -22.22992 -21.61708 -21.32730 -20.36037 -20.09449 -19.31478 -17.64224 -17.27354 -16.37617 -16.28780 -15.67451 -15.30164 -15.17371 -14.99707 -14.66941 -14.31024 -14.22891 -13.87873 -13.58476 -13.54011 -13.26806 -13.21783 -12.97451 -12.93473 -12.44993 -12.27065 -11.98386 -11.81908 -11.69728 -11.63313 -11.43309 -11.27686 -11.16238 -11.11788 -10.97778 -10.86374 -10.28522 -10.22132 -10.06190 -10.01881 -9.77450 -9.71917 -9.54683 -8.99511 -8.74974 -8.39359 -7.05573 -5.86828 -3.16763 2.00403 2.57531 2.70091 3.11541 3.33349 3.37568 3.42529 3.43069 4.03914 4.27725 4.33245 4.48058 4.56529 4.64249 4.80153 4.84192 4.94962 5.03816 5.06007 5.08951 5.19773 5.23778 5.30166 5.38355 5.40220 5.46838 5.47966 5.54995 5.59509 5.67309 5.69821 5.77160 5.77613 5.81284 5.85281 5.97066 5.98996 6.13432 6.13685 6.27868 6.32358 6.40409 6.42127 6.58387 6.74443 6.82087 7.15451 7.59939 7.69354 8.07904 8.30903 8.34931 9.43147 9.97512 10.33052 11.35380 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010659 B = 0.003179 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.247278 B = 8805.926942 C =10868.099573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.039 4.039 3 C 0.205 3.795 4 N -0.494 5.494 5 C -0.034 4.034 6 C -0.051 4.051 7 N -0.447 5.447 8 C 0.150 3.850 9 H 0.109 0.891 10 C -0.166 4.166 11 C -0.154 4.154 12 C 0.525 3.475 13 O -0.545 6.545 14 N -0.702 5.702 15 C 0.169 3.831 16 H 0.089 0.911 17 C 0.148 3.852 18 N -0.731 5.731 19 C -0.244 4.244 20 H 0.070 0.930 21 C -0.010 4.010 22 N -0.931 5.931 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.163 4.163 28 C -0.170 4.170 29 C -0.185 4.185 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.167 0.833 36 H 0.173 0.827 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.058 0.942 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.405 0.595 43 H 0.025 0.975 44 H 0.036 0.964 45 H 0.385 0.615 46 H 0.256 0.744 47 H 0.103 0.897 48 H 0.094 0.906 49 H 0.089 0.911 50 H 0.082 0.918 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.426 -12.278 12.011 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.078 4.078 3 C -0.057 4.057 4 N -0.213 5.213 5 C -0.182 4.182 6 C -0.184 4.184 7 N -0.129 5.129 8 C 0.047 3.953 9 H 0.127 0.873 10 C -0.223 4.223 11 C -0.195 4.195 12 C 0.311 3.689 13 O -0.424 6.424 14 N -0.351 5.351 15 C 0.064 3.936 16 H 0.107 0.893 17 C 0.019 3.981 18 N -0.376 5.376 19 C -0.375 4.375 20 H 0.088 0.912 21 C -0.207 4.207 22 N -0.580 5.580 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.183 4.183 28 C -0.208 4.208 29 C -0.222 4.222 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.185 0.815 36 H 0.190 0.810 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.078 0.922 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.240 0.760 43 H 0.043 0.957 44 H 0.053 0.947 45 H 0.219 0.781 46 H 0.066 0.934 47 H 0.121 0.879 48 H 0.113 0.887 49 H 0.108 0.892 50 H 0.101 0.899 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.136 -12.794 12.266 19.106 hybrid contribution 1.230 1.460 -1.140 2.224 sum -5.905 -11.333 11.126 16.944 Atomic orbital electron populations 1.21741 0.93972 1.02209 1.02554 1.19957 0.96465 0.87577 1.03841 1.23222 1.04380 0.96648 0.81469 1.70212 1.18411 1.04341 1.28323 1.22242 1.06921 0.96201 0.92799 1.22700 1.08939 0.90019 0.96757 1.45623 1.48592 1.11582 1.07148 1.21151 0.95586 1.01257 0.77341 0.87311 1.22286 0.97851 0.99170 1.03026 1.21999 0.98331 1.04744 0.94411 1.20052 0.84207 0.78162 0.86490 1.90594 1.27431 1.48246 1.76163 1.45946 1.12524 1.62285 1.14395 1.20823 1.01555 0.89480 0.81706 0.89317 1.20922 0.94520 0.86315 0.96295 1.42323 1.39745 0.98843 1.56702 1.19161 1.09187 0.88334 1.20862 0.91175 1.24736 0.99035 0.96580 1.00312 1.69641 1.35616 1.09459 1.43240 0.86263 0.80517 0.79558 0.79784 1.21225 1.21656 1.21232 1.22651 0.95900 0.93515 1.06247 1.22896 1.01115 1.01370 0.95404 1.23260 1.03082 1.01914 0.93957 0.91946 0.92698 0.91664 0.90458 0.88877 0.81546 0.80992 0.91966 0.88135 0.92242 0.87637 0.88439 0.75980 0.95749 0.94658 0.78076 0.93406 0.87920 0.88720 0.89210 0.89940 0.86508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 37.16 0.37 -0.83 16 2 C -0.04 -0.36 6.08 -27.88 -0.17 -0.53 16 3 C 0.20 2.48 7.16 -155.42 -1.11 1.36 16 4 N -0.49 -6.86 11.25 -10.81 -0.12 -6.98 16 5 C -0.03 -0.42 11.87 -17.81 -0.21 -0.63 16 6 C -0.05 -0.59 10.70 -16.56 -0.18 -0.77 16 7 N -0.45 -5.10 2.61 -106.83 -0.28 -5.38 16 8 C 0.15 1.61 2.64 -67.93 -0.18 1.43 16 9 H 0.11 1.14 6.48 -51.93 -0.34 0.80 16 10 C -0.17 -1.91 8.99 37.16 0.33 -1.58 16 11 C -0.15 -1.68 5.19 -27.89 -0.14 -1.83 16 12 C 0.53 7.02 6.88 -10.99 -0.08 6.95 16 13 O -0.54 -8.26 10.99 5.56 0.06 -8.20 16 14 N -0.70 -9.86 4.50 -53.80 -0.24 -10.10 16 15 C 0.17 2.59 2.43 -67.93 -0.17 2.43 16 16 H 0.09 1.56 7.33 -51.93 -0.38 1.18 16 17 C 0.15 2.71 5.80 -4.04 -0.02 2.69 16 18 N -0.73 -17.18 5.43 -59.91 -0.33 -17.50 16 19 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 20 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 21 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 22 N -0.93 -26.94 13.06 55.49 0.72 -26.22 16 23 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 C -0.16 -2.12 5.36 -90.62 -0.49 -2.61 16 28 C -0.17 -2.06 10.18 -26.69 -0.27 -2.33 16 29 C -0.19 -2.28 9.74 -26.69 -0.26 -2.54 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.62 7.07 -51.93 -0.37 0.25 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.17 1.68 8.06 -52.48 -0.42 1.25 16 36 H 0.17 1.68 8.06 -52.49 -0.42 1.25 16 37 H 0.06 0.72 7.95 -51.93 -0.41 0.31 16 38 H 0.10 1.33 5.95 -51.93 -0.31 1.03 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.11 1.17 8.09 -51.93 -0.42 0.75 16 41 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.41 5.53 8.60 -40.82 -0.35 5.17 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.39 9.59 7.33 -40.82 -0.30 9.29 16 46 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 47 H 0.10 1.26 8.11 -51.93 -0.42 0.84 16 48 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 49 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.12 1.62 5.02 -51.93 -0.26 1.36 16 LS Contribution 410.77 15.07 6.19 6.19 Total: -1.00 -31.02 410.77 -10.43 -41.45 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: -8.60 Total: 15.89 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -2.82 Total: -5.80 kcal Atomic # 7 Polarization: -65.93 SS G_CDS: -0.24 Total: -66.17 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.06 Total: -8.20 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.02 -10.43 -41.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754440574.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.479 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.21 seconds